Gcaud10187.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10187.t1
Unique NameGcaud10187.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length385
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2977_length_4282_cov_5.000000contigNODE_2977_length_4282_cov_5.000000:539..1693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1423144.Gal_01393
PFAMsLactamase_B
Max annot lvl2|Bacteria
Evalue4.23e-26
EggNOG OGsCOG0491@1|root,COG0491@2|Bacteria
DescriptionThiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
COG categoryGM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10187Gcaud10187Gracilaria caudata M_176_S67 malegeneNODE_2977_length_4282_cov_5.000000 539..1693 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10187.t1.stop1Gcaud10187.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2977_length_4282_cov_5.000000 539..541 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10187.t1.CDS1Gcaud10187.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2977_length_4282_cov_5.000000 539..1693 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10187.t1.exon1Gcaud10187.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2977_length_4282_cov_5.000000 539..1693 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10187.t1.start1Gcaud10187.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2977_length_4282_cov_5.000000 1691..1693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10187.t1Gcaud10187.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2977_length_4282_cov_5.000000 539..1693 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10187.t1 ID=Gcaud10187.t1|Name=Gcaud10187.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=385bp
MTFANIIPAFAVVLLTLYSSTEAVHPLQLSTSTRFSDECTEAVQCILNSS
DNETCSTVPIPPSSVTVFNVNGSFELTLVRKGVWVYTEGSYNSMLITAGR
RLVIIDSPQAQGPTVNTTRLVDAIPQVLNGTVPYRIDFIYSHSHFDHIGT
SRVVVSFLEERYANAKLLIWGTAETFDIIRRSVTNRSVLPNVKIGKRGAT
LRLSRSLKIRLDVVGGHTASDLRIYIPKSRDGAGIVMYVDVIFPNFAPPF
DFAISDDLGLYVLNQKALLELDFETLVPGHVGVGNKSDVSANLMYTEFVI
DAAVRTQGSISIEAQLEAGLGNFFDPNAVEFGNFFFPFVGVIRPLEVEAC
FRLVLEEWGCRLGGVDLVARGHCFTALQYALLEI*
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spliced messenger RNA

>Gcaud10187.t1 ID=Gcaud10187.t1|Name=Gcaud10187.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at NODE_2977_length_4282_cov_5.000000:539..1693- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATTTGCCAATATAATCCCGGCATTTGCTGTCGTTCTGTTGACACT
TTATTCTAGCACAGAAGCCGTCCATCCGTTGCAGCTGAGCACGAGCACTC
GGTTCTCTGACGAATGTACTGAGGCAGTGCAATGTATTCTCAACTCTTCT
GACAATGAAACATGTTCAACGGTTCCGATTCCTCCGAGCAGCGTGACGGT
ATTCAATGTGAACGGAAGCTTTGAATTGACGCTTGTGCGCAAGGGAGTGT
GGGTGTACACGGAAGGATCTTACAATTCGATGCTAATCACGGCGGGACGT
CGTTTGGTAATCATCGATTCTCCACAGGCACAAGGTCCGACGGTGAACAC
CACACGACTCGTGGATGCAATTCCCCAAGTGTTAAATGGAACGGTGCCCT
ACCGCATCGACTTCATATATTCACACTCGCATTTTGATCACATTGGAACG
TCCCGCGTAGTGGTAAGCTTTTTGGAAGAACGTTATGCAAACGCAAAGCT
TCTGATTTGGGGAACAGCCGAAACATTCGATATCATCAGGCGGTCGGTGA
CGAATCGTTCGGTGTTGCCCAATGTGAAGATTGGCAAAAGGGGAGCAACT
CTGAGATTGTCTCGCTCTTTGAAGATCAGACTGGACGTTGTGGGAGGTCA
CACTGCAAGTGATTTGCGTATATACATTCCGAAGTCACGAGATGGAGCAG
GTATTGTAATGTACGTGGATGTGATATTCCCGAACTTTGCGCCGCCTTTC
GACTTTGCGATCAGCGATGATCTAGGATTATACGTTCTTAATCAAAAAGC
ACTGCTGGAACTGGACTTTGAGACATTAGTGCCCGGTCACGTCGGGGTTG
GAAACAAGAGTGATGTATCGGCGAACCTGATGTACACTGAGTTTGTGATC
GATGCAGCAGTGAGGACGCAAGGCTCCATCAGCATCGAAGCACAGCTTGA
AGCTGGGCTTGGGAATTTCTTTGATCCGAATGCGGTAGAGTTTGGAAACT
TCTTCTTTCCATTTGTGGGGGTGATACGGCCGCTGGAGGTGGAGGCGTGC
TTCCGATTGGTGCTGGAGGAATGGGGATGCAGGCTTGGGGGGGTGGATTT
AGTGGCGAGGGGCCATTGTTTCACGGCGCTGCAATACGCTCTACTAGAAA
TTTGA
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protein sequence of Gcaud10187.t1

>Gcaud10187.t1 ID=Gcaud10187.t1|Name=Gcaud10187.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=385bp
MTFANIIPAFAVVLLTLYSSTEAVHPLQLSTSTRFSDECTEAVQCILNSS
DNETCSTVPIPPSSVTVFNVNGSFELTLVRKGVWVYTEGSYNSMLITAGR
RLVIIDSPQAQGPTVNTTRLVDAIPQVLNGTVPYRIDFIYSHSHFDHIGT
SRVVVSFLEERYANAKLLIWGTAETFDIIRRSVTNRSVLPNVKIGKRGAT
LRLSRSLKIRLDVVGGHTASDLRIYIPKSRDGAGIVMYVDVIFPNFAPPF
DFAISDDLGLYVLNQKALLELDFETLVPGHVGVGNKSDVSANLMYTEFVI
DAAVRTQGSISIEAQLEAGLGNFFDPNAVEFGNFFFPFVGVIRPLEVEAC
FRLVLEEWGCRLGGVDLVARGHCFTALQYALLEI*
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mRNA from alignment at NODE_2977_length_4282_cov_5.000000:539..1693-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10187.t1 ID=Gcaud10187.t1|Name=Gcaud10187.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at NODE_2977_length_4282_cov_5.000000:539..1693- (Gracilaria caudata M_176_S67 male)
ATGACATTTGCCAATATAATCCCGGCATTTGCTGTCGTTCTGTTGACACT
TTATTCTAGCACAGAAGCCGTCCATCCGTTGCAGCTGAGCACGAGCACTC
GGTTCTCTGACGAATGTACTGAGGCAGTGCAATGTATTCTCAACTCTTCT
GACAATGAAACATGTTCAACGGTTCCGATTCCTCCGAGCAGCGTGACGGT
ATTCAATGTGAACGGAAGCTTTGAATTGACGCTTGTGCGCAAGGGAGTGT
GGGTGTACACGGAAGGATCTTACAATTCGATGCTAATCACGGCGGGACGT
CGTTTGGTAATCATCGATTCTCCACAGGCACAAGGTCCGACGGTGAACAC
CACACGACTCGTGGATGCAATTCCCCAAGTGTTAAATGGAACGGTGCCCT
ACCGCATCGACTTCATATATTCACACTCGCATTTTGATCACATTGGAACG
TCCCGCGTAGTGGTAAGCTTTTTGGAAGAACGTTATGCAAACGCAAAGCT
TCTGATTTGGGGAACAGCCGAAACATTCGATATCATCAGGCGGTCGGTGA
CGAATCGTTCGGTGTTGCCCAATGTGAAGATTGGCAAAAGGGGAGCAACT
CTGAGATTGTCTCGCTCTTTGAAGATCAGACTGGACGTTGTGGGAGGTCA
CACTGCAAGTGATTTGCGTATATACATTCCGAAGTCACGAGATGGAGCAG
GTATTGTAATGTACGTGGATGTGATATTCCCGAACTTTGCGCCGCCTTTC
GACTTTGCGATCAGCGATGATCTAGGATTATACGTTCTTAATCAAAAAGC
ACTGCTGGAACTGGACTTTGAGACATTAGTGCCCGGTCACGTCGGGGTTG
GAAACAAGAGTGATGTATCGGCGAACCTGATGTACACTGAGTTTGTGATC
GATGCAGCAGTGAGGACGCAAGGCTCCATCAGCATCGAAGCACAGCTTGA
AGCTGGGCTTGGGAATTTCTTTGATCCGAATGCGGTAGAGTTTGGAAACT
TCTTCTTTCCATTTGTGGGGGTGATACGGCCGCTGGAGGTGGAGGCGTGC
TTCCGATTGGTGCTGGAGGAATGGGGATGCAGGCTTGGGGGGGTGGATTT
AGTGGCGAGGGGCCATTGTTTCACGGCGCTGCAATACGCTCTACTAGAAA
TTTGA
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Coding sequence (CDS) from alignment at NODE_2977_length_4282_cov_5.000000:539..1693-

>Gcaud10187.t1 ID=Gcaud10187.t1|Name=Gcaud10187.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1155bp|location=Sequence derived from alignment at NODE_2977_length_4282_cov_5.000000:539..1693- (Gracilaria caudata M_176_S67 male)
ATGACATTTGCCAATATAATCCCGGCATTTGCTGTCGTTCTGTTGACACT
TTATTCTAGCACAGAAGCCGTCCATCCGTTGCAGCTGAGCACGAGCACTC
GGTTCTCTGACGAATGTACTGAGGCAGTGCAATGTATTCTCAACTCTTCT
GACAATGAAACATGTTCAACGGTTCCGATTCCTCCGAGCAGCGTGACGGT
ATTCAATGTGAACGGAAGCTTTGAATTGACGCTTGTGCGCAAGGGAGTGT
GGGTGTACACGGAAGGATCTTACAATTCGATGCTAATCACGGCGGGACGT
CGTTTGGTAATCATCGATTCTCCACAGGCACAAGGTCCGACGGTGAACAC
CACACGACTCGTGGATGCAATTCCCCAAGTGTTAAATGGAACGGTGCCCT
ACCGCATCGACTTCATATATTCACACTCGCATTTTGATCACATTGGAACG
TCCCGCGTAGTGGTAAGCTTTTTGGAAGAACGTTATGCAAACGCAAAGCT
TCTGATTTGGGGAACAGCCGAAACATTCGATATCATCAGGCGGTCGGTGA
CGAATCGTTCGGTGTTGCCCAATGTGAAGATTGGCAAAAGGGGAGCAACT
CTGAGATTGTCTCGCTCTTTGAAGATCAGACTGGACGTTGTGGGAGGTCA
CACTGCAAGTGATTTGCGTATATACATTCCGAAGTCACGAGATGGAGCAG
GTATTGTAATGTACGTGGATGTGATATTCCCGAACTTTGCGCCGCCTTTC
GACTTTGCGATCAGCGATGATCTAGGATTATACGTTCTTAATCAAAAAGC
ACTGCTGGAACTGGACTTTGAGACATTAGTGCCCGGTCACGTCGGGGTTG
GAAACAAGAGTGATGTATCGGCGAACCTGATGTACACTGAGTTTGTGATC
GATGCAGCAGTGAGGACGCAAGGCTCCATCAGCATCGAAGCACAGCTTGA
AGCTGGGCTTGGGAATTTCTTTGATCCGAATGCGGTAGAGTTTGGAAACT
TCTTCTTTCCATTTGTGGGGGTGATACGGCCGCTGGAGGTGGAGGCGTGC
TTCCGATTGGTGCTGGAGGAATGGGGATGCAGGCTTGGGGGGGTGGATTT
AGTGGCGAGGGGCCATTGTTTCACGGCGCTGCAATACGCTCTACTAGAAA
TTTGA
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