Gcaud10186.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10186.t1
Unique Name	Gcaud10186.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	391

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_969_length_15649_cov_5.005721	contig	NODE_969_length_15649_cov_5.005721:7137..8309 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10186	Gcaud10186	Gracilaria caudata M_176_S67 male	gene	NODE_969_length_15649_cov_5.005721 7137..8309 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10186.t1.start1	Gcaud10186.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_969_length_15649_cov_5.005721 7137..7139 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10186.t1.CDS1	Gcaud10186.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_969_length_15649_cov_5.005721 7137..8309 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10186.t1.exon1	Gcaud10186.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_969_length_15649_cov_5.005721 7137..8309 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10186.t1.stop1	Gcaud10186.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_969_length_15649_cov_5.005721 8307..8309 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10186.t1	Gcaud10186.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_969_length_15649_cov_5.005721 7137..8309 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_969_length_15649_cov_5.005721:7137..8309+
coding sequence from alignment at NODE_969_length_15649_cov_5.005721:7137..8309+

mRNA sequence

>Gcaud10186.t1 ID=Gcaud10186.t1|Name=Gcaud10186.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=391bp
MAASSSRTPLERFLRQIKDDIVQTWKEDIARLMKRLDDLEPCSRLPPIPS
PIRGKDFVREPNVSVLMRSAITYHNAMIPDGKEKYIQFPAGATDKKLNSD
AKDALESIMIKKLGEDYGTLSWATASKTTHYAQCEAVIRAAASSRDFLVF
RQSSNFWCIRWLAEQKMKSKKPSPTTTAGNGGRRRLAHHSQSVRNERPIQ
NVDTYSPVRQREMGIRLEPDLCTPSVVPQPPAIVEEEALQQNVVVPRSPA
VMPTATTSTPFAQVREPVNRTSQVFLRFRVRAPRATAVEESNLTPLTNPT
PSMAARVISDNASPHTGHESVQRQTTDDISTTVTAPCQGFRVPGLLLDGS
YRRTFEGTSGTSRRISKRAEVLSTEAPNIILNEAEVEQEG*

spliced messenger RNA

>Gcaud10186.t1 ID=Gcaud10186.t1|Name=Gcaud10186.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at NODE_969_length_15649_cov_5.005721:7137..8309+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCGAGCTCCTCCCGAACGCCGCTGGAGCGTTTTCTTCGACAAAT
CAAGGACGATATCGTCCAGACATGGAAAGAGGACATTGCAAGACTCATGA
AAAGGCTCGATGACTTGGAACCGTGCTCCAGACTTCCTCCTATTCCAAGC
CCCATTAGGGGAAAAGATTTCGTGCGGGAGCCGAATGTTTCTGTGTTGAT
GAGGTCTGCAATCACGTATCATAACGCCATGATACCGGATGGGAAGGAGA
AGTACATTCAGTTTCCAGCGGGGGCAACGGATAAGAAACTGAACAGCGAT
GCGAAAGATGCACTTGAATCGATCATGATTAAAAAACTGGGAGAGGACTA
TGGTACACTTTCGTGGGCAACTGCATCCAAGACAACTCATTACGCACAGT
GTGAAGCGGTGATTCGTGCGGCAGCCTCATCAAGAGACTTTCTTGTGTTC
CGACAGAGCAGCAATTTTTGGTGCATTCGCTGGCTCGCAGAACAGAAGAT
GAAGTCCAAGAAGCCCTCGCCTACAACAACTGCGGGTAACGGTGGCCGTC
GACGTTTGGCTCATCATTCTCAATCAGTTCGAAATGAACGTCCCATCCAA
AATGTTGACACATATAGCCCAGTAAGGCAAAGAGAGATGGGTATAAGGCT
GGAGCCAGATCTTTGTACTCCCTCCGTCGTTCCACAGCCTCCTGCGATCG
TTGAAGAAGAAGCTTTACAGCAAAATGTAGTGGTTCCACGATCTCCTGCT
GTGATGCCGACAGCAACTACGAGTACACCATTCGCTCAAGTTCGGGAACC
AGTCAATCGCACTTCTCAGGTCTTTCTAAGATTTCGGGTTCGAGCTCCGC
GAGCTACCGCAGTTGAGGAGTCCAACCTAACACCGTTAACGAATCCTACC
CCGAGCATGGCGGCTCGTGTGATAAGTGATAATGCAAGTCCGCACACAGG
GCATGAAAGTGTGCAAAGGCAGACAACAGACGATATAAGCACAACGGTTA
CCGCTCCATGTCAAGGATTTCGAGTTCCGGGGTTACTTTTGGATGGTAGT
TATAGACGTACATTTGAGGGGACATCAGGAACATCGCGGCGTATTTCCAA
GCGGGCTGAGGTTCTAAGCACCGAGGCTCCGAATATAATACTGAACGAGG
CAGAGGTAGAGCAAGAGGGATGA

protein sequence of Gcaud10186.t1

>Gcaud10186.t1 ID=Gcaud10186.t1|Name=Gcaud10186.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=391bp
MAASSSRTPLERFLRQIKDDIVQTWKEDIARLMKRLDDLEPCSRLPPIPS
PIRGKDFVREPNVSVLMRSAITYHNAMIPDGKEKYIQFPAGATDKKLNSD
AKDALESIMIKKLGEDYGTLSWATASKTTHYAQCEAVIRAAASSRDFLVF
RQSSNFWCIRWLAEQKMKSKKPSPTTTAGNGGRRRLAHHSQSVRNERPIQ
NVDTYSPVRQREMGIRLEPDLCTPSVVPQPPAIVEEEALQQNVVVPRSPA
VMPTATTSTPFAQVREPVNRTSQVFLRFRVRAPRATAVEESNLTPLTNPT
PSMAARVISDNASPHTGHESVQRQTTDDISTTVTAPCQGFRVPGLLLDGS
YRRTFEGTSGTSRRISKRAEVLSTEAPNIILNEAEVEQEG*

mRNA from alignment at NODE_969_length_15649_cov_5.005721:7137..8309+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10186.t1 ID=Gcaud10186.t1|Name=Gcaud10186.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at NODE_969_length_15649_cov_5.005721:7137..8309+ (Gracilaria caudata M_176_S67 male)
ATGGCAGCGAGCTCCTCCCGAACGCCGCTGGAGCGTTTTCTTCGACAAAT
CAAGGACGATATCGTCCAGACATGGAAAGAGGACATTGCAAGACTCATGA
AAAGGCTCGATGACTTGGAACCGTGCTCCAGACTTCCTCCTATTCCAAGC
CCCATTAGGGGAAAAGATTTCGTGCGGGAGCCGAATGTTTCTGTGTTGAT
GAGGTCTGCAATCACGTATCATAACGCCATGATACCGGATGGGAAGGAGA
AGTACATTCAGTTTCCAGCGGGGGCAACGGATAAGAAACTGAACAGCGAT
GCGAAAGATGCACTTGAATCGATCATGATTAAAAAACTGGGAGAGGACTA
TGGTACACTTTCGTGGGCAACTGCATCCAAGACAACTCATTACGCACAGT
GTGAAGCGGTGATTCGTGCGGCAGCCTCATCAAGAGACTTTCTTGTGTTC
CGACAGAGCAGCAATTTTTGGTGCATTCGCTGGCTCGCAGAACAGAAGAT
GAAGTCCAAGAAGCCCTCGCCTACAACAACTGCGGGTAACGGTGGCCGTC
GACGTTTGGCTCATCATTCTCAATCAGTTCGAAATGAACGTCCCATCCAA
AATGTTGACACATATAGCCCAGTAAGGCAAAGAGAGATGGGTATAAGGCT
GGAGCCAGATCTTTGTACTCCCTCCGTCGTTCCACAGCCTCCTGCGATCG
TTGAAGAAGAAGCTTTACAGCAAAATGTAGTGGTTCCACGATCTCCTGCT
GTGATGCCGACAGCAACTACGAGTACACCATTCGCTCAAGTTCGGGAACC
AGTCAATCGCACTTCTCAGGTCTTTCTAAGATTTCGGGTTCGAGCTCCGC
GAGCTACCGCAGTTGAGGAGTCCAACCTAACACCGTTAACGAATCCTACC
CCGAGCATGGCGGCTCGTGTGATAAGTGATAATGCAAGTCCGCACACAGG
GCATGAAAGTGTGCAAAGGCAGACAACAGACGATATAAGCACAACGGTTA
CCGCTCCATGTCAAGGATTTCGAGTTCCGGGGTTACTTTTGGATGGTAGT
TATAGACGTACATTTGAGGGGACATCAGGAACATCGCGGCGTATTTCCAA
GCGGGCTGAGGTTCTAAGCACCGAGGCTCCGAATATAATACTGAACGAGG
CAGAGGTAGAGCAAGAGGGATGA

Coding sequence (CDS) from alignment at NODE_969_length_15649_cov_5.005721:7137..8309+

>Gcaud10186.t1 ID=Gcaud10186.t1|Name=Gcaud10186.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1173bp|location=Sequence derived from alignment at NODE_969_length_15649_cov_5.005721:7137..8309+ (Gracilaria caudata M_176_S67 male)
ATGGCAGCGAGCTCCTCCCGAACGCCGCTGGAGCGTTTTCTTCGACAAAT
CAAGGACGATATCGTCCAGACATGGAAAGAGGACATTGCAAGACTCATGA
AAAGGCTCGATGACTTGGAACCGTGCTCCAGACTTCCTCCTATTCCAAGC
CCCATTAGGGGAAAAGATTTCGTGCGGGAGCCGAATGTTTCTGTGTTGAT
GAGGTCTGCAATCACGTATCATAACGCCATGATACCGGATGGGAAGGAGA
AGTACATTCAGTTTCCAGCGGGGGCAACGGATAAGAAACTGAACAGCGAT
GCGAAAGATGCACTTGAATCGATCATGATTAAAAAACTGGGAGAGGACTA
TGGTACACTTTCGTGGGCAACTGCATCCAAGACAACTCATTACGCACAGT
GTGAAGCGGTGATTCGTGCGGCAGCCTCATCAAGAGACTTTCTTGTGTTC
CGACAGAGCAGCAATTTTTGGTGCATTCGCTGGCTCGCAGAACAGAAGAT
GAAGTCCAAGAAGCCCTCGCCTACAACAACTGCGGGTAACGGTGGCCGTC
GACGTTTGGCTCATCATTCTCAATCAGTTCGAAATGAACGTCCCATCCAA
AATGTTGACACATATAGCCCAGTAAGGCAAAGAGAGATGGGTATAAGGCT
GGAGCCAGATCTTTGTACTCCCTCCGTCGTTCCACAGCCTCCTGCGATCG
TTGAAGAAGAAGCTTTACAGCAAAATGTAGTGGTTCCACGATCTCCTGCT
GTGATGCCGACAGCAACTACGAGTACACCATTCGCTCAAGTTCGGGAACC
AGTCAATCGCACTTCTCAGGTCTTTCTAAGATTTCGGGTTCGAGCTCCGC
GAGCTACCGCAGTTGAGGAGTCCAACCTAACACCGTTAACGAATCCTACC
CCGAGCATGGCGGCTCGTGTGATAAGTGATAATGCAAGTCCGCACACAGG
GCATGAAAGTGTGCAAAGGCAGACAACAGACGATATAAGCACAACGGTTA
CCGCTCCATGTCAAGGATTTCGAGTTCCGGGGTTACTTTTGGATGGTAGT
TATAGACGTACATTTGAGGGGACATCAGGAACATCGCGGCGTATTTCCAA
GCGGGCTGAGGTTCTAAGCACCGAGGCTCCGAATATAATACTGAACGAGG
CAGAGGTAGAGCAAGAGGGATGA