Gcaud10174.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10174.t1
Unique Name	Gcaud10174.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	223

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_260_length_33639_cov_4.497526	contig	NODE_260_length_33639_cov_4.497526:23660..24328 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	90675.XP_010500756.1
PFAMs	RWD
Max annot lvl	35493\|Streptophyta
GOs	GO:0002181,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005844,GO:0006355,GO:0006357,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010469,GO:0010556,GO:0010646,GO:0010647,GO:0014070,GO:0019219,GO:0019222,GO:0019538,GO:0023051,GO:0023052,GO:0023056,GO:0030518,GO:0030521,GO:0030522,GO:0031323,GO:0031326,GO:0032502,GO:0032870,GO:0032991,GO:0033143,GO:0033145,GO:0033554,GO:0033574,GO:0033993,GO:0034599,GO:0034641,GO:0034645,GO:0042221,GO:0043043,GO:0043170,GO:0043401,GO:0043603,GO:0043604,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0048518,GO:0048522,GO:0048545,GO:0048583,GO:0048584,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0060765,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071383,GO:0071394,GO:0071396,GO:0071407,GO:0071495,GO:0071704,GO:0080090,GO:1901564,GO:1901566,GO:1901576,GO:1901654,GO:1901655,GO:1901700,GO:1901701,GO:1903506,GO:1990904,GO:2000112,GO:2000273,GO:2000823,GO:2000825,GO:2001141
Evalue	1.32e-17
EggNOG OGs	KOG4018@1\|root,KOG4018@2759\|Eukaryota,37JHD@33090\|Viridiplantae,3GCQ6@35493\|Streptophyta,3HPAZ@3699\|Brassicales
Description	RWD domain-containing protein
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10174	Gcaud10174	Gracilaria caudata M_176_S67 male	gene	NODE_260_length_33639_cov_4.497526 23660..24328 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10174.t1.start1	Gcaud10174.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_260_length_33639_cov_4.497526 23660..23662 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10174.t1.CDS1	Gcaud10174.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_260_length_33639_cov_4.497526 23660..24328 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10174.t1.exon1	Gcaud10174.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_260_length_33639_cov_4.497526 23660..24328 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10174.t1.stop1	Gcaud10174.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_260_length_33639_cov_4.497526 24326..24328 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10174.t1	Gcaud10174.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_260_length_33639_cov_4.497526 23660..24328 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_260_length_33639_cov_4.497526:23660..24328+
coding sequence from alignment at NODE_260_length_33639_cov_4.497526:23660..24328+

mRNA sequence

>Gcaud10174.t1 ID=Gcaud10174.t1|Name=Gcaud10174.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=223bp
MDPAEEQAAELEALEAIFATEFRILQHQNDKEGARFEIDLADDVNETVKI
RLVVTHTQNYPQEPPVLVLHALEGLSTSRRKELQSHLESAAAEYAEDHMP
SAFSLCEAAKDWIATHVVGHTQDDDEQHGNDAKFETLDATQEDKVEVISS
KAMGTPVTVESFMSWREKFLEELESSKSVEQVRKETNTKLTGREFFESKT
VVVTAESESFWENEAMFYEDDA*

spliced messenger RNA

>Gcaud10174.t1 ID=Gcaud10174.t1|Name=Gcaud10174.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=669bp|location=Sequence derived from alignment at NODE_260_length_33639_cov_4.497526:23660..24328+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCCGGCAGAAGAACAAGCCGCAGAGCTAGAGGCACTGGAAGCTAT
CTTTGCGACCGAATTCCGAATCCTACAACATCAGAACGACAAAGAAGGCG
CTCGTTTTGAAATTGACCTTGCTGATGATGTGAATGAGACAGTGAAGATT
AGACTTGTTGTAACACATACTCAAAACTATCCTCAAGAACCACCCGTACT
CGTACTACACGCGCTTGAAGGTCTGTCTACCTCGCGGCGGAAAGAGCTGC
AATCTCACCTCGAGTCGGCGGCGGCAGAATACGCAGAAGATCATATGCCA
TCCGCATTTTCTTTATGCGAGGCTGCAAAGGATTGGATCGCAACTCATGT
TGTGGGACACACACAGGATGATGATGAACAACATGGAAACGATGCCAAAT
TCGAAACGCTGGATGCCACTCAGGAAGACAAGGTGGAAGTGATATCAAGC
AAGGCGATGGGCACCCCTGTCACAGTTGAAAGTTTTATGTCATGGCGCGA
AAAGTTTCTGGAAGAGCTGGAAAGCTCAAAATCCGTAGAGCAGGTTCGAA
AAGAAACGAACACTAAGTTGACAGGGAGGGAGTTCTTTGAGTCGAAAACG
GTGGTTGTCACAGCTGAAAGCGAGAGTTTTTGGGAGAATGAGGCAATGTT
TTACGAAGACGATGCGTGA

protein sequence of Gcaud10174.t1

>Gcaud10174.t1 ID=Gcaud10174.t1|Name=Gcaud10174.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=223bp
MDPAEEQAAELEALEAIFATEFRILQHQNDKEGARFEIDLADDVNETVKI
RLVVTHTQNYPQEPPVLVLHALEGLSTSRRKELQSHLESAAAEYAEDHMP
SAFSLCEAAKDWIATHVVGHTQDDDEQHGNDAKFETLDATQEDKVEVISS
KAMGTPVTVESFMSWREKFLEELESSKSVEQVRKETNTKLTGREFFESKT
VVVTAESESFWENEAMFYEDDA*

mRNA from alignment at NODE_260_length_33639_cov_4.497526:23660..24328+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10174.t1 ID=Gcaud10174.t1|Name=Gcaud10174.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=669bp|location=Sequence derived from alignment at NODE_260_length_33639_cov_4.497526:23660..24328+ (Gracilaria caudata M_176_S67 male)
ATGGACCCGGCAGAAGAACAAGCCGCAGAGCTAGAGGCACTGGAAGCTAT
CTTTGCGACCGAATTCCGAATCCTACAACATCAGAACGACAAAGAAGGCG
CTCGTTTTGAAATTGACCTTGCTGATGATGTGAATGAGACAGTGAAGATT
AGACTTGTTGTAACACATACTCAAAACTATCCTCAAGAACCACCCGTACT
CGTACTACACGCGCTTGAAGGTCTGTCTACCTCGCGGCGGAAAGAGCTGC
AATCTCACCTCGAGTCGGCGGCGGCAGAATACGCAGAAGATCATATGCCA
TCCGCATTTTCTTTATGCGAGGCTGCAAAGGATTGGATCGCAACTCATGT
TGTGGGACACACACAGGATGATGATGAACAACATGGAAACGATGCCAAAT
TCGAAACGCTGGATGCCACTCAGGAAGACAAGGTGGAAGTGATATCAAGC
AAGGCGATGGGCACCCCTGTCACAGTTGAAAGTTTTATGTCATGGCGCGA
AAAGTTTCTGGAAGAGCTGGAAAGCTCAAAATCCGTAGAGCAGGTTCGAA
AAGAAACGAACACTAAGTTGACAGGGAGGGAGTTCTTTGAGTCGAAAACG
GTGGTTGTCACAGCTGAAAGCGAGAGTTTTTGGGAGAATGAGGCAATGTT
TTACGAAGACGATGCGTGA

Coding sequence (CDS) from alignment at NODE_260_length_33639_cov_4.497526:23660..24328+

>Gcaud10174.t1 ID=Gcaud10174.t1|Name=Gcaud10174.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=669bp|location=Sequence derived from alignment at NODE_260_length_33639_cov_4.497526:23660..24328+ (Gracilaria caudata M_176_S67 male)
ATGGACCCGGCAGAAGAACAAGCCGCAGAGCTAGAGGCACTGGAAGCTAT
CTTTGCGACCGAATTCCGAATCCTACAACATCAGAACGACAAAGAAGGCG
CTCGTTTTGAAATTGACCTTGCTGATGATGTGAATGAGACAGTGAAGATT
AGACTTGTTGTAACACATACTCAAAACTATCCTCAAGAACCACCCGTACT
CGTACTACACGCGCTTGAAGGTCTGTCTACCTCGCGGCGGAAAGAGCTGC
AATCTCACCTCGAGTCGGCGGCGGCAGAATACGCAGAAGATCATATGCCA
TCCGCATTTTCTTTATGCGAGGCTGCAAAGGATTGGATCGCAACTCATGT
TGTGGGACACACACAGGATGATGATGAACAACATGGAAACGATGCCAAAT
TCGAAACGCTGGATGCCACTCAGGAAGACAAGGTGGAAGTGATATCAAGC
AAGGCGATGGGCACCCCTGTCACAGTTGAAAGTTTTATGTCATGGCGCGA
AAAGTTTCTGGAAGAGCTGGAAAGCTCAAAATCCGTAGAGCAGGTTCGAA
AAGAAACGAACACTAAGTTGACAGGGAGGGAGTTCTTTGAGTCGAAAACG
GTGGTTGTCACAGCTGAAAGCGAGAGTTTTTGGGAGAATGAGGCAATGTT
TTACGAAGACGATGCGTGA