Gcaud10168.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10168.t1
Unique Name	Gcaud10168.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	360

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_260_length_33639_cov_4.497526	contig	NODE_260_length_33639_cov_4.497526:9039..10118 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	225117.XP_009337451.1
PFAMs	Pkinase
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K08819
GOs	GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004693,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009615,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0032501,GO:0032502,GO:0036211,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051704,GO:0051707,GO:0051726,GO:0065007,GO:0071704,GO:0097472,GO:0099402,GO:0140096,GO:1901564
Evalue	1.11e-132
EggNOG OGs	KOG0600@1\|root,KOG0600@2759\|Eukaryota,37N7D@33090\|Viridiplantae,3G71B@35493\|Streptophyta,4JIH9@91835\|fabids
EC	2.7.11.22,2.7.11.23
Description	Cyclin-dependent kinase
COG category	T
BRITE	ko00000,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10168	Gcaud10168	Gracilaria caudata M_176_S67 male	gene	NODE_260_length_33639_cov_4.497526 9039..10118 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10168.t1.start1	Gcaud10168.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_260_length_33639_cov_4.497526 9039..9041 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10168.t1.CDS1	Gcaud10168.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_260_length_33639_cov_4.497526 9039..10118 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10168.t1.exon1	Gcaud10168.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_260_length_33639_cov_4.497526 9039..10118 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10168.t1.stop1	Gcaud10168.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_260_length_33639_cov_4.497526 10116..10118 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10168.t1	Gcaud10168.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_260_length_33639_cov_4.497526 9039..10118 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_260_length_33639_cov_4.497526:9039..10118+
coding sequence from alignment at NODE_260_length_33639_cov_4.497526:9039..10118+

mRNA sequence

>Gcaud10168.t1 ID=Gcaud10168.t1|Name=Gcaud10168.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=360bp
MTMLAEAKAEDDGWDQPINRAPSRKRWRWSRDVTDFEEIEQIGEGTYGQV
WMGRDKHSGEIVALKKVRMDQEKEGFPVTAIRELKMLRSLRHENIVNLKE
IVTGQNQNRNKVQRNKHEIYMVFEYVDHDLTGLMDTPTIQFSEAQVKTYA
KQLLSGLWYCHEREVLHRDIKGSNLLIDNKGNLKIADFGLARTFNDQLKR
YTNRVITLWYRSPELLLGAEEYGPEVDIWSVGCLIVELLTKKPLFPGKDE
PEQLDLIFSVLGSPTESIWPGWQRLSLSHTVKTEAYSPRLRHKLRHLTPA
ALNLIEWLLKLDPKRRPTALEALDHEWFWSKPYPTPKEELPKYRSTHEFQ
AKQRRKEAR*

spliced messenger RNA

>Gcaud10168.t1 ID=Gcaud10168.t1|Name=Gcaud10168.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at NODE_260_length_33639_cov_4.497526:9039..10118+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTATGCTGGCAGAGGCAAAAGCCGAGGATGATGGTTGGGACCAACC
CATAAACCGTGCTCCATCTCGAAAGCGATGGCGCTGGTCGCGCGATGTCA
CTGACTTTGAAGAAATCGAGCAAATTGGAGAGGGAACGTACGGACAAGTG
TGGATGGGACGTGATAAGCATTCTGGTGAGATTGTTGCCCTGAAAAAGGT
GCGTATGGACCAGGAGAAGGAAGGATTTCCAGTCACAGCCATCAGAGAGT
TAAAGATGTTAAGGTCGTTGCGTCATGAAAACATCGTCAATCTCAAAGAA
ATCGTCACCGGTCAGAACCAAAATCGAAACAAGGTACAACGAAACAAGCA
TGAGATTTACATGGTGTTTGAATATGTAGACCATGACCTTACGGGCTTGA
TGGATACGCCTACTATTCAGTTCTCAGAGGCCCAGGTGAAAACGTATGCT
AAGCAACTGCTTTCGGGACTGTGGTATTGCCACGAACGTGAAGTTCTTCA
TCGTGATATCAAAGGTTCTAACTTGCTCATAGACAACAAAGGAAATCTCA
AGATAGCCGATTTCGGTTTAGCTCGCACATTTAACGACCAGCTGAAGCGT
TACACAAACCGTGTCATTACCTTGTGGTATCGATCACCCGAACTCTTGTT
AGGGGCAGAGGAATACGGTCCAGAAGTTGACATATGGTCAGTGGGATGTC
TCATAGTCGAACTACTCACAAAAAAACCGTTATTCCCAGGAAAAGATGAG
CCCGAGCAACTAGACCTTATCTTTAGCGTGCTTGGTAGTCCAACAGAAAG
CATATGGCCGGGTTGGCAGCGACTCAGCTTGTCCCACACCGTCAAGACCG
AGGCTTACTCGCCTCGATTACGCCACAAGCTAAGACATCTAACTCCAGCT
GCCTTGAATCTAATCGAATGGCTGCTGAAATTAGACCCCAAGCGAAGGCC
GACAGCCCTGGAAGCTTTGGATCATGAATGGTTTTGGTCAAAGCCGTACC
CTACGCCAAAGGAAGAACTTCCAAAATATCGCTCGACTCACGAATTTCAA
GCCAAGCAGAGACGAAAAGAAGCTCGGTGA

protein sequence of Gcaud10168.t1

>Gcaud10168.t1 ID=Gcaud10168.t1|Name=Gcaud10168.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=360bp
MTMLAEAKAEDDGWDQPINRAPSRKRWRWSRDVTDFEEIEQIGEGTYGQV
WMGRDKHSGEIVALKKVRMDQEKEGFPVTAIRELKMLRSLRHENIVNLKE
IVTGQNQNRNKVQRNKHEIYMVFEYVDHDLTGLMDTPTIQFSEAQVKTYA
KQLLSGLWYCHEREVLHRDIKGSNLLIDNKGNLKIADFGLARTFNDQLKR
YTNRVITLWYRSPELLLGAEEYGPEVDIWSVGCLIVELLTKKPLFPGKDE
PEQLDLIFSVLGSPTESIWPGWQRLSLSHTVKTEAYSPRLRHKLRHLTPA
ALNLIEWLLKLDPKRRPTALEALDHEWFWSKPYPTPKEELPKYRSTHEFQ
AKQRRKEAR*

mRNA from alignment at NODE_260_length_33639_cov_4.497526:9039..10118+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10168.t1 ID=Gcaud10168.t1|Name=Gcaud10168.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at NODE_260_length_33639_cov_4.497526:9039..10118+ (Gracilaria caudata M_176_S67 male)
ATGACTATGCTGGCAGAGGCAAAAGCCGAGGATGATGGTTGGGACCAACC
CATAAACCGTGCTCCATCTCGAAAGCGATGGCGCTGGTCGCGCGATGTCA
CTGACTTTGAAGAAATCGAGCAAATTGGAGAGGGAACGTACGGACAAGTG
TGGATGGGACGTGATAAGCATTCTGGTGAGATTGTTGCCCTGAAAAAGGT
GCGTATGGACCAGGAGAAGGAAGGATTTCCAGTCACAGCCATCAGAGAGT
TAAAGATGTTAAGGTCGTTGCGTCATGAAAACATCGTCAATCTCAAAGAA
ATCGTCACCGGTCAGAACCAAAATCGAAACAAGGTACAACGAAACAAGCA
TGAGATTTACATGGTGTTTGAATATGTAGACCATGACCTTACGGGCTTGA
TGGATACGCCTACTATTCAGTTCTCAGAGGCCCAGGTGAAAACGTATGCT
AAGCAACTGCTTTCGGGACTGTGGTATTGCCACGAACGTGAAGTTCTTCA
TCGTGATATCAAAGGTTCTAACTTGCTCATAGACAACAAAGGAAATCTCA
AGATAGCCGATTTCGGTTTAGCTCGCACATTTAACGACCAGCTGAAGCGT
TACACAAACCGTGTCATTACCTTGTGGTATCGATCACCCGAACTCTTGTT
AGGGGCAGAGGAATACGGTCCAGAAGTTGACATATGGTCAGTGGGATGTC
TCATAGTCGAACTACTCACAAAAAAACCGTTATTCCCAGGAAAAGATGAG
CCCGAGCAACTAGACCTTATCTTTAGCGTGCTTGGTAGTCCAACAGAAAG
CATATGGCCGGGTTGGCAGCGACTCAGCTTGTCCCACACCGTCAAGACCG
AGGCTTACTCGCCTCGATTACGCCACAAGCTAAGACATCTAACTCCAGCT
GCCTTGAATCTAATCGAATGGCTGCTGAAATTAGACCCCAAGCGAAGGCC
GACAGCCCTGGAAGCTTTGGATCATGAATGGTTTTGGTCAAAGCCGTACC
CTACGCCAAAGGAAGAACTTCCAAAATATCGCTCGACTCACGAATTTCAA
GCCAAGCAGAGACGAAAAGAAGCTCGGTGA

Coding sequence (CDS) from alignment at NODE_260_length_33639_cov_4.497526:9039..10118+

>Gcaud10168.t1 ID=Gcaud10168.t1|Name=Gcaud10168.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1080bp|location=Sequence derived from alignment at NODE_260_length_33639_cov_4.497526:9039..10118+ (Gracilaria caudata M_176_S67 male)
ATGACTATGCTGGCAGAGGCAAAAGCCGAGGATGATGGTTGGGACCAACC
CATAAACCGTGCTCCATCTCGAAAGCGATGGCGCTGGTCGCGCGATGTCA
CTGACTTTGAAGAAATCGAGCAAATTGGAGAGGGAACGTACGGACAAGTG
TGGATGGGACGTGATAAGCATTCTGGTGAGATTGTTGCCCTGAAAAAGGT
GCGTATGGACCAGGAGAAGGAAGGATTTCCAGTCACAGCCATCAGAGAGT
TAAAGATGTTAAGGTCGTTGCGTCATGAAAACATCGTCAATCTCAAAGAA
ATCGTCACCGGTCAGAACCAAAATCGAAACAAGGTACAACGAAACAAGCA
TGAGATTTACATGGTGTTTGAATATGTAGACCATGACCTTACGGGCTTGA
TGGATACGCCTACTATTCAGTTCTCAGAGGCCCAGGTGAAAACGTATGCT
AAGCAACTGCTTTCGGGACTGTGGTATTGCCACGAACGTGAAGTTCTTCA
TCGTGATATCAAAGGTTCTAACTTGCTCATAGACAACAAAGGAAATCTCA
AGATAGCCGATTTCGGTTTAGCTCGCACATTTAACGACCAGCTGAAGCGT
TACACAAACCGTGTCATTACCTTGTGGTATCGATCACCCGAACTCTTGTT
AGGGGCAGAGGAATACGGTCCAGAAGTTGACATATGGTCAGTGGGATGTC
TCATAGTCGAACTACTCACAAAAAAACCGTTATTCCCAGGAAAAGATGAG
CCCGAGCAACTAGACCTTATCTTTAGCGTGCTTGGTAGTCCAACAGAAAG
CATATGGCCGGGTTGGCAGCGACTCAGCTTGTCCCACACCGTCAAGACCG
AGGCTTACTCGCCTCGATTACGCCACAAGCTAAGACATCTAACTCCAGCT
GCCTTGAATCTAATCGAATGGCTGCTGAAATTAGACCCCAAGCGAAGGCC
GACAGCCCTGGAAGCTTTGGATCATGAATGGTTTTGGTCAAAGCCGTACC
CTACGCCAAAGGAAGAACTTCCAAAATATCGCTCGACTCACGAATTTCAA
GCCAAGCAGAGACGAAAAGAAGCTCGGTGA