Gcaud10158.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10158.t1
Unique Name	Gcaud10158.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	206

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_253_length_34130_cov_4.507065	contig	NODE_253_length_34130_cov_4.507065:19771..20388 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	395961.Cyan7425_1432
Preferred name	nblB
PFAMs	HEAT_2,HEAT_PBS
Max annot lvl	1117\|Cyanobacteria
Evalue	1.43e-33
EggNOG OGs	COG1413@1\|root,COG1413@2\|Bacteria,1G341@1117\|Cyanobacteria,3KGXR@43988\|Cyanothece
Description	PFAM PBS lyase HEAT domain protein repeat-containing protein
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10158	Gcaud10158	Gracilaria caudata M_176_S67 male	gene	NODE_253_length_34130_cov_4.507065 19771..20388 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10158.t1.start1	Gcaud10158.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_253_length_34130_cov_4.507065 19771..19773 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10158.t1.CDS1	Gcaud10158.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_253_length_34130_cov_4.507065 19771..20388 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10158.t1.exon1	Gcaud10158.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_253_length_34130_cov_4.507065 19771..20388 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10158.t1.stop1	Gcaud10158.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_253_length_34130_cov_4.507065 20386..20388 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10158.t1	Gcaud10158.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_253_length_34130_cov_4.507065 19771..20388 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_253_length_34130_cov_4.507065:19771..20388+
coding sequence from alignment at NODE_253_length_34130_cov_4.507065:19771..20388+

mRNA sequence

>Gcaud10158.t1 ID=Gcaud10158.t1|Name=Gcaud10158.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=206bp
MSGASSVKEMLVSSDSLDRIRGINRASELDSTSEIVSTLVSIATEDDNQQ
VRYVAISRLASLEPESLSEEDKETLLAASRFILVNDTESSCQAGAADLIA
GLRLMEGFDDLIATFNSTSDWMLKFSIAAGLGEMGDPKAFDFLVSILDQE
SEDNMLLVSAAIGSLGELGDERGIPIVERYLDSTDKSIKERAVIAHDMLM
KKNSG*

spliced messenger RNA

>Gcaud10158.t1 ID=Gcaud10158.t1|Name=Gcaud10158.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=618bp|location=Sequence derived from alignment at NODE_253_length_34130_cov_4.507065:19771..20388+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGGTGCATCCAGCGTGAAGGAGATGCTAGTATCAAGCGATTCATT
GGATCGTATTCGCGGAATAAATCGAGCTTCTGAACTAGATTCAACGTCCG
AAATTGTGTCAACGTTGGTCTCAATTGCTACAGAAGATGATAATCAACAA
GTGCGATATGTGGCAATATCTCGGCTCGCCAGCTTGGAGCCTGAGTCATT
ATCAGAAGAAGACAAGGAAACTCTGTTAGCGGCGTCAAGATTCATCCTGG
TGAACGACACCGAATCAAGTTGTCAAGCTGGTGCGGCAGATTTGATTGCC
GGGCTACGACTGATGGAAGGATTCGATGACTTGATTGCAACATTCAATTC
TACCTCAGATTGGATGCTCAAATTCAGCATCGCTGCTGGGTTGGGCGAGA
TGGGAGACCCGAAAGCGTTTGATTTCTTGGTGTCGATTCTGGACCAAGAA
TCTGAAGATAATATGTTGCTGGTGTCGGCGGCTATTGGATCGTTAGGTGA
GCTTGGAGATGAAAGAGGTATTCCAATTGTCGAACGGTACTTGGACAGCA
CGGATAAGTCCATTAAAGAGCGAGCGGTAATCGCGCATGATATGCTCATG
AAGAAGAACTCTGGTTGA

protein sequence of Gcaud10158.t1

>Gcaud10158.t1 ID=Gcaud10158.t1|Name=Gcaud10158.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=206bp
MSGASSVKEMLVSSDSLDRIRGINRASELDSTSEIVSTLVSIATEDDNQQ
VRYVAISRLASLEPESLSEEDKETLLAASRFILVNDTESSCQAGAADLIA
GLRLMEGFDDLIATFNSTSDWMLKFSIAAGLGEMGDPKAFDFLVSILDQE
SEDNMLLVSAAIGSLGELGDERGIPIVERYLDSTDKSIKERAVIAHDMLM
KKNSG*

mRNA from alignment at NODE_253_length_34130_cov_4.507065:19771..20388+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10158.t1 ID=Gcaud10158.t1|Name=Gcaud10158.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=618bp|location=Sequence derived from alignment at NODE_253_length_34130_cov_4.507065:19771..20388+ (Gracilaria caudata M_176_S67 male)
ATGTCTGGTGCATCCAGCGTGAAGGAGATGCTAGTATCAAGCGATTCATT
GGATCGTATTCGCGGAATAAATCGAGCTTCTGAACTAGATTCAACGTCCG
AAATTGTGTCAACGTTGGTCTCAATTGCTACAGAAGATGATAATCAACAA
GTGCGATATGTGGCAATATCTCGGCTCGCCAGCTTGGAGCCTGAGTCATT
ATCAGAAGAAGACAAGGAAACTCTGTTAGCGGCGTCAAGATTCATCCTGG
TGAACGACACCGAATCAAGTTGTCAAGCTGGTGCGGCAGATTTGATTGCC
GGGCTACGACTGATGGAAGGATTCGATGACTTGATTGCAACATTCAATTC
TACCTCAGATTGGATGCTCAAATTCAGCATCGCTGCTGGGTTGGGCGAGA
TGGGAGACCCGAAAGCGTTTGATTTCTTGGTGTCGATTCTGGACCAAGAA
TCTGAAGATAATATGTTGCTGGTGTCGGCGGCTATTGGATCGTTAGGTGA
GCTTGGAGATGAAAGAGGTATTCCAATTGTCGAACGGTACTTGGACAGCA
CGGATAAGTCCATTAAAGAGCGAGCGGTAATCGCGCATGATATGCTCATG
AAGAAGAACTCTGGTTGA

Coding sequence (CDS) from alignment at NODE_253_length_34130_cov_4.507065:19771..20388+

>Gcaud10158.t1 ID=Gcaud10158.t1|Name=Gcaud10158.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=618bp|location=Sequence derived from alignment at NODE_253_length_34130_cov_4.507065:19771..20388+ (Gracilaria caudata M_176_S67 male)
ATGTCTGGTGCATCCAGCGTGAAGGAGATGCTAGTATCAAGCGATTCATT
GGATCGTATTCGCGGAATAAATCGAGCTTCTGAACTAGATTCAACGTCCG
AAATTGTGTCAACGTTGGTCTCAATTGCTACAGAAGATGATAATCAACAA
GTGCGATATGTGGCAATATCTCGGCTCGCCAGCTTGGAGCCTGAGTCATT
ATCAGAAGAAGACAAGGAAACTCTGTTAGCGGCGTCAAGATTCATCCTGG
TGAACGACACCGAATCAAGTTGTCAAGCTGGTGCGGCAGATTTGATTGCC
GGGCTACGACTGATGGAAGGATTCGATGACTTGATTGCAACATTCAATTC
TACCTCAGATTGGATGCTCAAATTCAGCATCGCTGCTGGGTTGGGCGAGA
TGGGAGACCCGAAAGCGTTTGATTTCTTGGTGTCGATTCTGGACCAAGAA
TCTGAAGATAATATGTTGCTGGTGTCGGCGGCTATTGGATCGTTAGGTGA
GCTTGGAGATGAAAGAGGTATTCCAATTGTCGAACGGTACTTGGACAGCA
CGGATAAGTCCATTAAAGAGCGAGCGGTAATCGCGCATGATATGCTCATG
AAGAAGAACTCTGGTTGA