Gcaud10156.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10156.t1
Unique Name	Gcaud10156.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	567

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_253_length_34130_cov_4.507065	contig	NODE_253_length_34130_cov_4.507065:13983..15683 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10156	Gcaud10156	Gracilaria caudata M_176_S67 male	gene	NODE_253_length_34130_cov_4.507065 13983..15683 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10156.t1.stop1	Gcaud10156.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_253_length_34130_cov_4.507065 13983..13985 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10156.t1.CDS1	Gcaud10156.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_253_length_34130_cov_4.507065 13983..15683 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10156.t1.exon1	Gcaud10156.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_253_length_34130_cov_4.507065 13983..15683 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10156.t1.start1	Gcaud10156.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_253_length_34130_cov_4.507065 15681..15683 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10156.t1	Gcaud10156.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_253_length_34130_cov_4.507065 13983..15683 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_253_length_34130_cov_4.507065:13983..15683-
coding sequence from alignment at NODE_253_length_34130_cov_4.507065:13983..15683-

mRNA sequence

>Gcaud10156.t1 ID=Gcaud10156.t1|Name=Gcaud10156.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=567bp
MLSSDRIRTKLRAALDSCDQKSLKAIISQLPTALPHAEDPLEIATCLEQV
RVAADVFIEACDSDTAFESAIRTRSALISARVLPWAVSVLKNFAFEERVI
SRVALTLAHLGGGVESRGDIGAAGAVDELSSLWKSHPSCCAIVQTLISLC
GGHIDNISRFMRRRGITTAIKVLKSSDAARNTLLAERILILMGICAICTP
DNNFEGISLVPTILGVLKVQKTRTQTHLTRHSFIAIANMAECWKKEKAGY
ELGDLHVLTELILEKWISSPRSGEMAFASSWALTALYGYDESVLNRIKGR
SKAVEPILERWRVKLRTVDHLASLTEEIQPEMDFGQKRSDSIDKPIEAKT
GKTVIPDPGSEVDGIDSESEGSDTQEGSITDRENSPVSVDQRSIESQTIV
SDSDSDDDGNLGSELADETKPKTNYKKSNSPSKEIPIVILDSDSDGQCCS
LAEPRYPSRSKKGRSSPKTMETTRTRKRPRAKRSDQDSNITLTQVSAKKR
KEELGPENPGVRRSSRQRKPTPKFSQFRSSPGRQRTRLLGRTSIESELPR
VLDPSIVPPNCRYTLC*

spliced messenger RNA

>Gcaud10156.t1 ID=Gcaud10156.t1|Name=Gcaud10156.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1701bp|location=Sequence derived from alignment at NODE_253_length_34130_cov_4.507065:13983..15683- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCTCTTCCGACCGCATCCGGACCAAGTTGCGTGCCGCGCTAGATTC
ATGTGATCAAAAAAGTCTCAAAGCCATCATTTCCCAGCTACCTACCGCTC
TTCCGCATGCCGAGGATCCACTTGAGATAGCCACCTGTCTCGAGCAAGTG
CGTGTTGCCGCAGACGTTTTCATCGAAGCTTGTGATTCGGACACAGCCTT
TGAGTCTGCCATAAGAACTCGTTCAGCTCTTATTTCTGCTAGAGTTCTGC
CATGGGCTGTCTCTGTGTTGAAGAACTTTGCGTTCGAGGAGCGAGTCATA
AGCCGTGTTGCTCTGACCCTTGCGCACCTGGGTGGTGGCGTAGAATCTCG
AGGAGACATAGGAGCTGCCGGAGCTGTTGACGAACTTTCCAGCTTGTGGA
AGAGCCACCCTTCGTGCTGTGCTATAGTCCAAACACTCATCTCGCTCTGT
GGCGGTCATATAGATAATATTTCGCGATTCATGAGACGCCGTGGGATTAC
TACAGCTATCAAGGTGCTCAAAAGCTCTGATGCTGCGCGAAACACATTGC
TCGCAGAACGCATTCTGATTCTCATGGGTATTTGCGCCATTTGTACGCCT
GACAATAACTTTGAGGGCATCTCGCTCGTCCCCACTATCTTGGGAGTCTT
GAAGGTGCAGAAAACGCGAACGCAAACCCATCTGACCAGGCACTCGTTCA
TAGCCATTGCAAACATGGCAGAGTGCTGGAAGAAAGAGAAAGCCGGCTAT
GAACTTGGAGATCTTCATGTGCTAACTGAGCTTATTTTGGAAAAGTGGAT
ATCCTCTCCGAGGTCCGGGGAAATGGCATTTGCATCCTCATGGGCATTGA
CCGCGCTCTACGGATACGATGAGAGCGTCCTCAACCGTATCAAAGGGAGA
TCAAAAGCTGTTGAGCCCATTCTTGAGAGATGGCGGGTCAAGCTGCGGAC
AGTGGATCACCTGGCGAGTCTCACGGAAGAAATCCAGCCAGAAATGGACT
TTGGTCAAAAACGATCGGATTCAATCGACAAACCCATCGAAGCCAAAACG
GGCAAAACTGTTATACCTGACCCGGGGTCTGAGGTAGATGGAATTGATAG
TGAATCGGAGGGCAGTGACACTCAAGAAGGGAGTATCACGGACAGGGAGA
ACTCTCCTGTTTCCGTTGACCAACGATCTATAGAGAGTCAAACTATAGTA
AGTGATTCTGATTCAGATGATGACGGCAATCTTGGGTCAGAGCTTGCCGA
CGAAACCAAACCAAAGACGAATTACAAGAAGAGCAACTCACCGTCAAAGG
AGATTCCGATAGTAATTTTGGATTCGGATTCTGATGGCCAATGCTGCTCC
CTAGCTGAACCTCGATACCCCTCAAGGTCGAAGAAAGGGCGATCTTCACC
GAAAACAATGGAGACCACGAGAACAAGAAAGAGACCGCGTGCAAAAAGGT
CTGACCAAGATTCCAATATTACGCTCACGCAGGTGTCTGCGAAGAAGCGG
AAGGAAGAACTAGGGCCCGAGAATCCTGGCGTGCGCAGATCGAGCAGGCA
AAGAAAGCCGACTCCGAAGTTTTCCCAGTTTCGTTCTAGTCCGGGTCGAC
AAAGAACGCGTCTACTGGGCCGGACGAGTATTGAATCGGAATTACCCAGG
GTATTAGATCCGTCCATAGTTCCTCCAAATTGCCGTTATACGCTGTGTTA
G

protein sequence of Gcaud10156.t1

>Gcaud10156.t1 ID=Gcaud10156.t1|Name=Gcaud10156.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=567bp
MLSSDRIRTKLRAALDSCDQKSLKAIISQLPTALPHAEDPLEIATCLEQV
RVAADVFIEACDSDTAFESAIRTRSALISARVLPWAVSVLKNFAFEERVI
SRVALTLAHLGGGVESRGDIGAAGAVDELSSLWKSHPSCCAIVQTLISLC
GGHIDNISRFMRRRGITTAIKVLKSSDAARNTLLAERILILMGICAICTP
DNNFEGISLVPTILGVLKVQKTRTQTHLTRHSFIAIANMAECWKKEKAGY
ELGDLHVLTELILEKWISSPRSGEMAFASSWALTALYGYDESVLNRIKGR
SKAVEPILERWRVKLRTVDHLASLTEEIQPEMDFGQKRSDSIDKPIEAKT
GKTVIPDPGSEVDGIDSESEGSDTQEGSITDRENSPVSVDQRSIESQTIV
SDSDSDDDGNLGSELADETKPKTNYKKSNSPSKEIPIVILDSDSDGQCCS
LAEPRYPSRSKKGRSSPKTMETTRTRKRPRAKRSDQDSNITLTQVSAKKR
KEELGPENPGVRRSSRQRKPTPKFSQFRSSPGRQRTRLLGRTSIESELPR
VLDPSIVPPNCRYTLC*

mRNA from alignment at NODE_253_length_34130_cov_4.507065:13983..15683-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10156.t1 ID=Gcaud10156.t1|Name=Gcaud10156.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1701bp|location=Sequence derived from alignment at NODE_253_length_34130_cov_4.507065:13983..15683- (Gracilaria caudata M_176_S67 male)
ATGCTCTCTTCCGACCGCATCCGGACCAAGTTGCGTGCCGCGCTAGATTC
ATGTGATCAAAAAAGTCTCAAAGCCATCATTTCCCAGCTACCTACCGCTC
TTCCGCATGCCGAGGATCCACTTGAGATAGCCACCTGTCTCGAGCAAGTG
CGTGTTGCCGCAGACGTTTTCATCGAAGCTTGTGATTCGGACACAGCCTT
TGAGTCTGCCATAAGAACTCGTTCAGCTCTTATTTCTGCTAGAGTTCTGC
CATGGGCTGTCTCTGTGTTGAAGAACTTTGCGTTCGAGGAGCGAGTCATA
AGCCGTGTTGCTCTGACCCTTGCGCACCTGGGTGGTGGCGTAGAATCTCG
AGGAGACATAGGAGCTGCCGGAGCTGTTGACGAACTTTCCAGCTTGTGGA
AGAGCCACCCTTCGTGCTGTGCTATAGTCCAAACACTCATCTCGCTCTGT
GGCGGTCATATAGATAATATTTCGCGATTCATGAGACGCCGTGGGATTAC
TACAGCTATCAAGGTGCTCAAAAGCTCTGATGCTGCGCGAAACACATTGC
TCGCAGAACGCATTCTGATTCTCATGGGTATTTGCGCCATTTGTACGCCT
GACAATAACTTTGAGGGCATCTCGCTCGTCCCCACTATCTTGGGAGTCTT
GAAGGTGCAGAAAACGCGAACGCAAACCCATCTGACCAGGCACTCGTTCA
TAGCCATTGCAAACATGGCAGAGTGCTGGAAGAAAGAGAAAGCCGGCTAT
GAACTTGGAGATCTTCATGTGCTAACTGAGCTTATTTTGGAAAAGTGGAT
ATCCTCTCCGAGGTCCGGGGAAATGGCATTTGCATCCTCATGGGCATTGA
CCGCGCTCTACGGATACGATGAGAGCGTCCTCAACCGTATCAAAGGGAGA
TCAAAAGCTGTTGAGCCCATTCTTGAGAGATGGCGGGTCAAGCTGCGGAC
AGTGGATCACCTGGCGAGTCTCACGGAAGAAATCCAGCCAGAAATGGACT
TTGGTCAAAAACGATCGGATTCAATCGACAAACCCATCGAAGCCAAAACG
GGCAAAACTGTTATACCTGACCCGGGGTCTGAGGTAGATGGAATTGATAG
TGAATCGGAGGGCAGTGACACTCAAGAAGGGAGTATCACGGACAGGGAGA
ACTCTCCTGTTTCCGTTGACCAACGATCTATAGAGAGTCAAACTATAGTA
AGTGATTCTGATTCAGATGATGACGGCAATCTTGGGTCAGAGCTTGCCGA
CGAAACCAAACCAAAGACGAATTACAAGAAGAGCAACTCACCGTCAAAGG
AGATTCCGATAGTAATTTTGGATTCGGATTCTGATGGCCAATGCTGCTCC
CTAGCTGAACCTCGATACCCCTCAAGGTCGAAGAAAGGGCGATCTTCACC
GAAAACAATGGAGACCACGAGAACAAGAAAGAGACCGCGTGCAAAAAGGT
CTGACCAAGATTCCAATATTACGCTCACGCAGGTGTCTGCGAAGAAGCGG
AAGGAAGAACTAGGGCCCGAGAATCCTGGCGTGCGCAGATCGAGCAGGCA
AAGAAAGCCGACTCCGAAGTTTTCCCAGTTTCGTTCTAGTCCGGGTCGAC
AAAGAACGCGTCTACTGGGCCGGACGAGTATTGAATCGGAATTACCCAGG
GTATTAGATCCGTCCATAGTTCCTCCAAATTGCCGTTATACGCTGTGTTA
G

Coding sequence (CDS) from alignment at NODE_253_length_34130_cov_4.507065:13983..15683-

>Gcaud10156.t1 ID=Gcaud10156.t1|Name=Gcaud10156.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1701bp|location=Sequence derived from alignment at NODE_253_length_34130_cov_4.507065:13983..15683- (Gracilaria caudata M_176_S67 male)
ATGCTCTCTTCCGACCGCATCCGGACCAAGTTGCGTGCCGCGCTAGATTC
ATGTGATCAAAAAAGTCTCAAAGCCATCATTTCCCAGCTACCTACCGCTC
TTCCGCATGCCGAGGATCCACTTGAGATAGCCACCTGTCTCGAGCAAGTG
CGTGTTGCCGCAGACGTTTTCATCGAAGCTTGTGATTCGGACACAGCCTT
TGAGTCTGCCATAAGAACTCGTTCAGCTCTTATTTCTGCTAGAGTTCTGC
CATGGGCTGTCTCTGTGTTGAAGAACTTTGCGTTCGAGGAGCGAGTCATA
AGCCGTGTTGCTCTGACCCTTGCGCACCTGGGTGGTGGCGTAGAATCTCG
AGGAGACATAGGAGCTGCCGGAGCTGTTGACGAACTTTCCAGCTTGTGGA
AGAGCCACCCTTCGTGCTGTGCTATAGTCCAAACACTCATCTCGCTCTGT
GGCGGTCATATAGATAATATTTCGCGATTCATGAGACGCCGTGGGATTAC
TACAGCTATCAAGGTGCTCAAAAGCTCTGATGCTGCGCGAAACACATTGC
TCGCAGAACGCATTCTGATTCTCATGGGTATTTGCGCCATTTGTACGCCT
GACAATAACTTTGAGGGCATCTCGCTCGTCCCCACTATCTTGGGAGTCTT
GAAGGTGCAGAAAACGCGAACGCAAACCCATCTGACCAGGCACTCGTTCA
TAGCCATTGCAAACATGGCAGAGTGCTGGAAGAAAGAGAAAGCCGGCTAT
GAACTTGGAGATCTTCATGTGCTAACTGAGCTTATTTTGGAAAAGTGGAT
ATCCTCTCCGAGGTCCGGGGAAATGGCATTTGCATCCTCATGGGCATTGA
CCGCGCTCTACGGATACGATGAGAGCGTCCTCAACCGTATCAAAGGGAGA
TCAAAAGCTGTTGAGCCCATTCTTGAGAGATGGCGGGTCAAGCTGCGGAC
AGTGGATCACCTGGCGAGTCTCACGGAAGAAATCCAGCCAGAAATGGACT
TTGGTCAAAAACGATCGGATTCAATCGACAAACCCATCGAAGCCAAAACG
GGCAAAACTGTTATACCTGACCCGGGGTCTGAGGTAGATGGAATTGATAG
TGAATCGGAGGGCAGTGACACTCAAGAAGGGAGTATCACGGACAGGGAGA
ACTCTCCTGTTTCCGTTGACCAACGATCTATAGAGAGTCAAACTATAGTA
AGTGATTCTGATTCAGATGATGACGGCAATCTTGGGTCAGAGCTTGCCGA
CGAAACCAAACCAAAGACGAATTACAAGAAGAGCAACTCACCGTCAAAGG
AGATTCCGATAGTAATTTTGGATTCGGATTCTGATGGCCAATGCTGCTCC
CTAGCTGAACCTCGATACCCCTCAAGGTCGAAGAAAGGGCGATCTTCACC
GAAAACAATGGAGACCACGAGAACAAGAAAGAGACCGCGTGCAAAAAGGT
CTGACCAAGATTCCAATATTACGCTCACGCAGGTGTCTGCGAAGAAGCGG
AAGGAAGAACTAGGGCCCGAGAATCCTGGCGTGCGCAGATCGAGCAGGCA
AAGAAAGCCGACTCCGAAGTTTTCCCAGTTTCGTTCTAGTCCGGGTCGAC
AAAGAACGCGTCTACTGGGCCGGACGAGTATTGAATCGGAATTACCCAGG
GTATTAGATCCGTCCATAGTTCCTCCAAATTGCCGTTATACGCTGTGTTA
G