Gcaud10154.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10154.t1
Unique NameGcaud10154.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length251
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_253_length_34130_cov_4.507065contigNODE_253_length_34130_cov_4.507065:9446..10458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMO310CT
Preferred nameRPL7
PFAMsRibosomal_L30,Ribosomal_L30_N
Max annot lvl2759|Eukaryota
KEGG koko:K02937,ko:K08819,ko:K19933
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000172,GO:0000184,GO:0000447,GO:0000460,GO:0000462,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000956,GO:0001889,GO:0002165,GO:0002181,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008033,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009791,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022613,GO:0022625,GO:0022626,GO:0030016,GO:0030017,GO:0030312,GO:0030490,GO:0030684,GO:0030687,GO:0031090,GO:0031099,GO:0031100,GO:0031672,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035073,GO:0035210,GO:0042254,GO:0042273,GO:0042274,GO:0042788,GO:0042802,GO:0042803,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0046983,GO:0048513,GO:0048519,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0061008,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097421,GO:0098588,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494,GO:1905267,GO:1990904
Evalue1.32e-105
EggNOG OGsCOG1841@1|root,KOG3184@2759|Eukaryota
EC2.7.11.22,2.7.11.23
Descriptionmaturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko03011,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10154Gcaud10154Gracilaria caudata M_176_S67 malegeneNODE_253_length_34130_cov_4.507065 9446..10458 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10154.t1Gcaud10154.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_253_length_34130_cov_4.507065 9446..10458 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10154.t1.start1Gcaud10154.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_253_length_34130_cov_4.507065 9446..9448 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10154.t1.CDS1Gcaud10154.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_253_length_34130_cov_4.507065 9446..9465 +
Gcaud10154.t1.CDS2Gcaud10154.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_253_length_34130_cov_4.507065 9726..10458 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10154.t1.exon1Gcaud10154.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_253_length_34130_cov_4.507065 9446..9465 +
Gcaud10154.t1.exon2Gcaud10154.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_253_length_34130_cov_4.507065 9726..10458 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10154.t1.intron1Gcaud10154.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_253_length_34130_cov_4.507065 9466..9725 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10154.t1.stop1Gcaud10154.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_253_length_34130_cov_4.507065 10456..10458 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10154.t1 ID=Gcaud10154.t1|Name=Gcaud10154.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=251bp
MVAKTDNIPVPESILKKRRTQERVAGERLIAAQAAKKARREAKKEAFKRA
ETYAAEYKASERAVIDAKRAARKEGKFYVPDGAKVAFVIRIRGINSMPPK
EKKILQLLRLRQIQNGVFVKLNYATIRMLQRVEPYITYGYPNLKSVKELI
YKRGFGKIGKPGSWSRIPLSDNRIVEQVLGKHDIICMEDLVHEIFTCGPH
FKEANNFLWPFKLSSPRGGYSKKSKLIHFAEGGDAGNREDLINPLIRKMN
*
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spliced messenger RNA

>Gcaud10154.t1 ID=Gcaud10154.t1|Name=Gcaud10154.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=753bp|location=Sequence derived from alignment at NODE_253_length_34130_cov_4.507065:9446..10458+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCCAAGACAGACAATATTCCGGTGCCTGAAAGCATCCTGAAGAA
ACGCCGTACACAAGAACGTGTTGCTGGAGAACGTCTAATTGCCGCGCAGG
CCGCAAAGAAGGCACGCCGCGAGGCCAAGAAAGAGGCCTTTAAGCGAGCT
GAGACCTACGCAGCTGAGTACAAGGCATCAGAGCGTGCCGTTATTGATGC
CAAGCGAGCTGCTCGTAAGGAAGGCAAATTCTATGTACCTGACGGTGCGA
AGGTTGCGTTTGTTATTCGCATTCGTGGTATCAACTCTATGCCACCGAAG
GAGAAGAAGATTCTTCAACTTTTGCGTCTTCGCCAGATTCAAAACGGCGT
GTTTGTCAAACTGAACTACGCTACTATTCGTATGTTGCAGAGGGTTGAGC
CGTACATTACTTATGGTTATCCCAACTTGAAGAGTGTCAAGGAGCTCATC
TACAAGAGAGGATTTGGAAAGATTGGAAAGCCAGGTTCTTGGTCTCGTAT
TCCATTGTCTGACAATAGAATTGTTGAGCAGGTTCTCGGAAAGCACGATA
TTATTTGCATGGAGGATTTGGTCCACGAGATCTTTACCTGCGGTCCACAC
TTCAAGGAGGCTAACAACTTCCTGTGGCCTTTCAAGCTCTCGTCGCCTCG
TGGCGGATACTCGAAGAAATCTAAGCTTATCCACTTTGCTGAAGGTGGTG
ATGCTGGTAACCGGGAAGATCTGATTAACCCACTGATCCGAAAAATGAAC
TAA
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protein sequence of Gcaud10154.t1

>Gcaud10154.t1 ID=Gcaud10154.t1|Name=Gcaud10154.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=251bp
MVAKTDNIPVPESILKKRRTQERVAGERLIAAQAAKKARREAKKEAFKRA
ETYAAEYKASERAVIDAKRAARKEGKFYVPDGAKVAFVIRIRGINSMPPK
EKKILQLLRLRQIQNGVFVKLNYATIRMLQRVEPYITYGYPNLKSVKELI
YKRGFGKIGKPGSWSRIPLSDNRIVEQVLGKHDIICMEDLVHEIFTCGPH
FKEANNFLWPFKLSSPRGGYSKKSKLIHFAEGGDAGNREDLINPLIRKMN
*
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mRNA from alignment at NODE_253_length_34130_cov_4.507065:9446..10458+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10154.t1 ID=Gcaud10154.t1|Name=Gcaud10154.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1013bp|location=Sequence derived from alignment at NODE_253_length_34130_cov_4.507065:9446..10458+ (Gracilaria caudata M_176_S67 male)
ATGGTCGCCAAGACAGACAAGTAAGTAGTCTCACTTCTTTGCGATCCGCT
CGGTCTCTGCACAACTCGTCCCGAAGCCACACTCGATGACTTCGGATCAG
CCTCTTGTGCAATGCCCATAATTCTTGTTGTTCAACACTTGTAGTGAGAA
AGAGATGCGAGACGGGTTATGAAAATCAGAGCACATTAGCACTATCGAGT
GTGAGCGGCGTTCACGTCCGATCACGGCAATAGTACTAACCCTCGCTTGT
CGAATTTCCCATCCGCCTCACCCGCTACAGTATTCCGGTGCCTGAAAGCA
TCCTGAAGAAACGCCGTACACAAGAACGTGTTGCTGGAGAACGTCTAATT
GCCGCGCAGGCCGCAAAGAAGGCACGCCGCGAGGCCAAGAAAGAGGCCTT
TAAGCGAGCTGAGACCTACGCAGCTGAGTACAAGGCATCAGAGCGTGCCG
TTATTGATGCCAAGCGAGCTGCTCGTAAGGAAGGCAAATTCTATGTACCT
GACGGTGCGAAGGTTGCGTTTGTTATTCGCATTCGTGGTATCAACTCTAT
GCCACCGAAGGAGAAGAAGATTCTTCAACTTTTGCGTCTTCGCCAGATTC
AAAACGGCGTGTTTGTCAAACTGAACTACGCTACTATTCGTATGTTGCAG
AGGGTTGAGCCGTACATTACTTATGGTTATCCCAACTTGAAGAGTGTCAA
GGAGCTCATCTACAAGAGAGGATTTGGAAAGATTGGAAAGCCAGGTTCTT
GGTCTCGTATTCCATTGTCTGACAATAGAATTGTTGAGCAGGTTCTCGGA
AAGCACGATATTATTTGCATGGAGGATTTGGTCCACGAGATCTTTACCTG
CGGTCCACACTTCAAGGAGGCTAACAACTTCCTGTGGCCTTTCAAGCTCT
CGTCGCCTCGTGGCGGATACTCGAAGAAATCTAAGCTTATCCACTTTGCT
GAAGGTGGTGATGCTGGTAACCGGGAAGATCTGATTAACCCACTGATCCG
AAAAATGAACTAA
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Coding sequence (CDS) from alignment at NODE_253_length_34130_cov_4.507065:9446..10458+

>Gcaud10154.t1 ID=Gcaud10154.t1|Name=Gcaud10154.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=753bp|location=Sequence derived from alignment at NODE_253_length_34130_cov_4.507065:9446..10458+ (Gracilaria caudata M_176_S67 male)
ATGGTCGCCAAGACAGACAATATTCCGGTGCCTGAAAGCATCCTGAAGAA
ACGCCGTACACAAGAACGTGTTGCTGGAGAACGTCTAATTGCCGCGCAGG
CCGCAAAGAAGGCACGCCGCGAGGCCAAGAAAGAGGCCTTTAAGCGAGCT
GAGACCTACGCAGCTGAGTACAAGGCATCAGAGCGTGCCGTTATTGATGC
CAAGCGAGCTGCTCGTAAGGAAGGCAAATTCTATGTACCTGACGGTGCGA
AGGTTGCGTTTGTTATTCGCATTCGTGGTATCAACTCTATGCCACCGAAG
GAGAAGAAGATTCTTCAACTTTTGCGTCTTCGCCAGATTCAAAACGGCGT
GTTTGTCAAACTGAACTACGCTACTATTCGTATGTTGCAGAGGGTTGAGC
CGTACATTACTTATGGTTATCCCAACTTGAAGAGTGTCAAGGAGCTCATC
TACAAGAGAGGATTTGGAAAGATTGGAAAGCCAGGTTCTTGGTCTCGTAT
TCCATTGTCTGACAATAGAATTGTTGAGCAGGTTCTCGGAAAGCACGATA
TTATTTGCATGGAGGATTTGGTCCACGAGATCTTTACCTGCGGTCCACAC
TTCAAGGAGGCTAACAACTTCCTGTGGCCTTTCAAGCTCTCGTCGCCTCG
TGGCGGATACTCGAAGAAATCTAAGCTTATCCACTTTGCTGAAGGTGGTG
ATGCTGGTAACCGGGAAGATCTGATTAACCCACTGATCCGAAAAATGAAC
TAA
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