Gcaud10148.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10148.t1
Unique Name	Gcaud10148.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	354

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1366_length_11134_cov_4.408132	contig	NODE_1366_length_11134_cov_4.408132:9810..11061 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	107636.JQNK01000009_gene3619
PFAMs	2OG-FeII_Oxy_3
Max annot lvl	28211\|Alphaproteobacteria
Evalue	6.61e-39
EggNOG OGs	COG3751@1\|root,COG3751@2\|Bacteria,1QV60@1224\|Proteobacteria,2TR8W@28211\|Alphaproteobacteria
Description	2OG-Fe(II) oxygenase superfamily
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10148	Gcaud10148	Gracilaria caudata M_176_S67 male	gene	NODE_1366_length_11134_cov_4.408132 9810..11061 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10148.t1	Gcaud10148.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1366_length_11134_cov_4.408132 9810..11061 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10148.t1.start1	Gcaud10148.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1366_length_11134_cov_4.408132 9810..9812 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10148.t1.CDS1	Gcaud10148.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1366_length_11134_cov_4.408132 9810..10403 +
Gcaud10148.t1.CDS2	Gcaud10148.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_1366_length_11134_cov_4.408132 10536..10977 +
Gcaud10148.t1.CDS3	Gcaud10148.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_1366_length_11134_cov_4.408132 11036..11061 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10148.t1.exon1	Gcaud10148.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1366_length_11134_cov_4.408132 9810..10403 +
Gcaud10148.t1.exon2	Gcaud10148.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_1366_length_11134_cov_4.408132 10536..10977 +
Gcaud10148.t1.exon3	Gcaud10148.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_1366_length_11134_cov_4.408132 11036..11061 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10148.t1.intron1	Gcaud10148.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_1366_length_11134_cov_4.408132 10404..10535 +
Gcaud10148.t1.intron2	Gcaud10148.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_1366_length_11134_cov_4.408132 10978..11035 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10148.t1.stop1	Gcaud10148.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1366_length_11134_cov_4.408132 11059..11061 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1366_length_11134_cov_4.408132:9810..11061+
coding sequence from alignment at NODE_1366_length_11134_cov_4.408132:9810..11061+

mRNA sequence

>Gcaud10148.t1 ID=Gcaud10148.t1|Name=Gcaud10148.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=354bp
MASDSFLTTLSNALDSVNATTTFAVGGPAHTLPLPALNVTGVGPIALPLQ
QSQAEALRAVSVQSPFGRGSDTIIDTSVRSSREISTSAISLGQAWNTAIQ
KLAQRKASALGVSSAVVSAELYKLVLYQPGDFFKPHQDTEKSPGMFATLV
VQLPSAFSSAALIVSHRQERKVFDYAKGSAVYFFATAFFTDCQHELTENE
EPEKFSYMLEHKYTETNISFRKLKGNDAARVSLLRQSAKFDLFLALVEKH
DSGVPNAPSYYSRRRRGYYDDDDEENGAGYSMQEILDSSITTKKVIDEDD
VPVDTSFLTFDDEDDEFFFDGLDPDEEEFERYTGNAGPTLDYFYHFSKMG
CDS*

spliced messenger RNA

>Gcaud10148.t1 ID=Gcaud10148.t1|Name=Gcaud10148.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1062bp|location=Sequence derived from alignment at NODE_1366_length_11134_cov_4.408132:9810..11061+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCGGATTCGTTCCTCACAACCCTGTCAAATGCTCTGGACAGCGT
CAACGCAACCACCACTTTCGCTGTCGGTGGCCCCGCGCACACCCTCCCTC
TCCCGGCCCTCAACGTCACCGGCGTGGGCCCTATAGCGCTACCTCTTCAG
CAGTCGCAAGCTGAAGCTCTGCGCGCCGTATCCGTGCAATCGCCGTTCGG
TCGTGGCTCCGACACCATCATTGATACCTCCGTTCGCTCAAGCCGCGAAA
TCTCCACTTCGGCTATCTCCCTTGGTCAAGCATGGAATACCGCCATCCAA
AAACTCGCGCAGCGCAAGGCGTCCGCTTTAGGCGTATCCAGCGCAGTGGT
GTCAGCAGAGCTGTATAAATTGGTGTTGTATCAACCCGGTGATTTCTTCA
AGCCGCATCAGGACACCGAGAAGTCGCCGGGTATGTTTGCCACGCTCGTA
GTACAGCTCCCCTCAGCCTTTTCCTCCGCGGCCTTGATTGTGTCCCATCG
GCAGGAGCGCAAAGTGTTCGATTACGCCAAAGGAAGCGCTGTGTACTTCT
TTGCCACAGCCTTTTTCACAGACtgccaacacgagttaactgagAATGAA
GAGCCAGAGAAGTTCTCTTATATGCTTGAGCACAAATACACGGAGACGAA
TATTTCGTTTCGGAAACTAAAAGGAAACGATGCCGCGCGCGTATCGTTAC
TGCGTCAATCAGCAAAGTTTGATCTTTTCTTGGCACTCGTCGAGAAACAC
GATTCTGGTGTTCCGAATGCCCCCAGTTATTACAGTCGTCGTCGTCGCGG
ATACTATGACGATGACGACGAAGAAAATGGCGCGGGCTACTCAATGCAAG
AAATTCTAGATTCATCAATAACGACAAAGAAAGTTATCGATGAAGACGAT
GTGCCAGTCGATACGTCCTTTCTCACTTTCGATGACGAAGACGATGAGTT
CTTCTTTGACGGCCTGGATCCGGACGAAGAAGAATTCGAACGCTACACGG
GGAATGCGGGACCAACTCTGGATTACTTCTACCATTTTTCCAAGATGGGT
TGCGACTCGTAA

protein sequence of Gcaud10148.t1

>Gcaud10148.t1 ID=Gcaud10148.t1|Name=Gcaud10148.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=354bp
MASDSFLTTLSNALDSVNATTTFAVGGPAHTLPLPALNVTGVGPIALPLQ
QSQAEALRAVSVQSPFGRGSDTIIDTSVRSSREISTSAISLGQAWNTAIQ
KLAQRKASALGVSSAVVSAELYKLVLYQPGDFFKPHQDTEKSPGMFATLV
VQLPSAFSSAALIVSHRQERKVFDYAKGSAVYFFATAFFTDCQHELTENE
EPEKFSYMLEHKYTETNISFRKLKGNDAARVSLLRQSAKFDLFLALVEKH
DSGVPNAPSYYSRRRRGYYDDDDEENGAGYSMQEILDSSITTKKVIDEDD
VPVDTSFLTFDDEDDEFFFDGLDPDEEEFERYTGNAGPTLDYFYHFSKMG
CDS*

mRNA from alignment at NODE_1366_length_11134_cov_4.408132:9810..11061+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10148.t1 ID=Gcaud10148.t1|Name=Gcaud10148.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1252bp|location=Sequence derived from alignment at NODE_1366_length_11134_cov_4.408132:9810..11061+ (Gracilaria caudata M_176_S67 male)
ATGGCTTCGGATTCGTTCCTCACAACCCTGTCAAATGCTCTGGACAGCGT
CAACGCAACCACCACTTTCGCTGTCGGTGGCCCCGCGCACACCCTCCCTC
TCCCGGCCCTCAACGTCACCGGCGTGGGCCCTATAGCGCTACCTCTTCAG
CAGTCGCAAGCTGAAGCTCTGCGCGCCGTATCCGTGCAATCGCCGTTCGG
TCGTGGCTCCGACACCATCATTGATACCTCCGTTCGCTCAAGCCGCGAAA
TCTCCACTTCGGCTATCTCCCTTGGTCAAGCATGGAATACCGCCATCCAA
AAACTCGCGCAGCGCAAGGCGTCCGCTTTAGGCGTATCCAGCGCAGTGGT
GTCAGCAGAGCTGTATAAATTGGTGTTGTATCAACCCGGTGATTTCTTCA
AGCCGCATCAGGACACCGAGAAGTCGCCGGGTATGTTTGCCACGCTCGTA
GTACAGCTCCCCTCAGCCTTTTCCTCCGCGGCCTTGATTGTGTCCCATCG
GCAGGAGCGCAAAGTGTTCGATTACGCCAAAGGAAGCGCTGTGTACTTCT
TTGCCACAGCCTTTTTCACAGACtgccaacacgagttaactgaggtgaaa
gggggaaacaggctggtgctgttgtacaatctcatacgctgcgacggtcg
cgcaccaggcagagagcttgtgcggcacgatgcAATGTTAGACAAAATCG
TTCGTGTTGCTGAGAATTGGAGACAGAATGAAGAGCCAGAGAAGTTCTCT
TATATGCTTGAGCACAAATACACGGAGACGAATATTTCGTTTCGGAAACT
AAAAGGAAACGATGCCGCGCGCGTATCGTTACTGCGTCAATCAGCAAAGT
TTGATCTTTTCTTGGCACTCGTCGAGAAACACGATTCTGGTGTTCCGAAT
GCCCCCAGTTATTACAGTCGTCGTCGTCGCGGATACTATGACGATGACGA
CGAAGAAAATGGCGCGGGCTACTCAATGCAAGAAATTCTAGATTCATCAA
TAACGACAAAGAAAGTTATCGATGAAGACGATGTGCCAGTCGATACGTCC
TTTCTCACTTTCGATGACGAAGACGATGAGTTCTTCTTTGACGGCCTGGA
TCCGGACGAAGAAGAATTCGAACGCTACACGGGGAATGCGGGACCAACTC
TGGATTACTTCTACCATTGTACCTTCCTGCTCATTTTGCCTCGCCGCCAG
GCATTCGCCCGTGCGTGTGAGGAAAGTTTCCAAGATGGGTTGCGACTCGT
AA

Coding sequence (CDS) from alignment at NODE_1366_length_11134_cov_4.408132:9810..11061+

>Gcaud10148.t1 ID=Gcaud10148.t1|Name=Gcaud10148.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1062bp|location=Sequence derived from alignment at NODE_1366_length_11134_cov_4.408132:9810..11061+ (Gracilaria caudata M_176_S67 male)
ATGGCTTCGGATTCGTTCCTCACAACCCTGTCAAATGCTCTGGACAGCGT
CAACGCAACCACCACTTTCGCTGTCGGTGGCCCCGCGCACACCCTCCCTC
TCCCGGCCCTCAACGTCACCGGCGTGGGCCCTATAGCGCTACCTCTTCAG
CAGTCGCAAGCTGAAGCTCTGCGCGCCGTATCCGTGCAATCGCCGTTCGG
TCGTGGCTCCGACACCATCATTGATACCTCCGTTCGCTCAAGCCGCGAAA
TCTCCACTTCGGCTATCTCCCTTGGTCAAGCATGGAATACCGCCATCCAA
AAACTCGCGCAGCGCAAGGCGTCCGCTTTAGGCGTATCCAGCGCAGTGGT
GTCAGCAGAGCTGTATAAATTGGTGTTGTATCAACCCGGTGATTTCTTCA
AGCCGCATCAGGACACCGAGAAGTCGCCGGGTATGTTTGCCACGCTCGTA
GTACAGCTCCCCTCAGCCTTTTCCTCCGCGGCCTTGATTGTGTCCCATCG
GCAGGAGCGCAAAGTGTTCGATTACGCCAAAGGAAGCGCTGTGTACTTCT
TTGCCACAGCCTTTTTCACAGACtgccaacacgagttaactgagAATGAA
GAGCCAGAGAAGTTCTCTTATATGCTTGAGCACAAATACACGGAGACGAA
TATTTCGTTTCGGAAACTAAAAGGAAACGATGCCGCGCGCGTATCGTTAC
TGCGTCAATCAGCAAAGTTTGATCTTTTCTTGGCACTCGTCGAGAAACAC
GATTCTGGTGTTCCGAATGCCCCCAGTTATTACAGTCGTCGTCGTCGCGG
ATACTATGACGATGACGACGAAGAAAATGGCGCGGGCTACTCAATGCAAG
AAATTCTAGATTCATCAATAACGACAAAGAAAGTTATCGATGAAGACGAT
GTGCCAGTCGATACGTCCTTTCTCACTTTCGATGACGAAGACGATGAGTT
CTTCTTTGACGGCCTGGATCCGGACGAAGAAGAATTCGAACGCTACACGG
GGAATGCGGGACCAACTCTGGATTACTTCTACCATTTTTCCAAGATGGGT
TGCGACTCGTAA