Gcaud10143.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10143.t1
Unique Name	Gcaud10143.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	497

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_596_length_21163_cov_5.239038	contig	NODE_596_length_21163_cov_5.239038:9898..11388 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10143	Gcaud10143	Gracilaria caudata M_176_S67 male	gene	NODE_596_length_21163_cov_5.239038 9898..11388 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10143.t1.start1	Gcaud10143.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_596_length_21163_cov_5.239038 9898..9900 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10143.t1.CDS1	Gcaud10143.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_596_length_21163_cov_5.239038 9898..11388 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10143.t1.exon1	Gcaud10143.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_596_length_21163_cov_5.239038 9898..11388 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10143.t1.stop1	Gcaud10143.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_596_length_21163_cov_5.239038 11386..11388 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10143.t1	Gcaud10143.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_596_length_21163_cov_5.239038 9898..11388 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_596_length_21163_cov_5.239038:9898..11388+
coding sequence from alignment at NODE_596_length_21163_cov_5.239038:9898..11388+

mRNA sequence

>Gcaud10143.t1 ID=Gcaud10143.t1|Name=Gcaud10143.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=497bp
MVRITGDEAPILAIIEVLKLVLIAACLSALKNLDNIWCMYSLQRDGHVTL
YENDIGRLTDKGFIKLITSCYSFAARRDKLNKETWEALNANDARRKALIN
TTRARKQLISVRTVLLLISAFVSLADVAALFSLSTEGKNVADKPEFGVRT
QQANYVPIGSRMDFYNPHEGQVRYEYVVRRLGRRISFRNGSQFEIVIPRR
LDPMHDEKWPFTMALADEDKYATVFIRDFTMHDSANFSELAGQVTGNTES
GMPLKHYKMAKRDADRKVCSGSISAISTTGVNGTATFCYTDELRNMSCAN
RKDGESVRFTMRCSEVRVERFGGNVIFDNDSIWWLTRLAGKDVGGRGEKS
LIQMNSLRAYKKDDVSPSALIVAAVLTEFPSQIVLQQRPFFVDVSVVIVP
NWLIVSSAVVICSVLVLSVSASVYAKVKNLVVLNNWQELLISNLLEPLDC
LNRVNKRKFRCVVGEANEYSEKKYRFYVEPHPGVAPIALARRQDVG*

spliced messenger RNA

>Gcaud10143.t1 ID=Gcaud10143.t1|Name=Gcaud10143.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1491bp|location=Sequence derived from alignment at NODE_596_length_21163_cov_5.239038:9898..11388+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCGTATTACCGGAGACGAGGCCCCAATACTAGCCATCATCGAGGT
GCTCAAGCTTGTCCTCATCGCCGCATGCTTATCAGCGCTGAAAAACCTCG
ACAACATATGGTGCATGTATTCGTTGCAGCGAGATGGCCACGTGACGCTT
TACGAGAACGACATTGGTCGACTTACCGACAAGGGATTCATCAAACTCAT
TACCTCCTGTTACTCATTCGCCGCCAGACGGGACAAACTGAACAAGGAAA
CGTGGGAGGCGTTGAACGCAAACGATGCGCGTCGGAAGGCGCTCATTAAC
ACTACTAGAGCTCGTAAACAATTGATCAGCGTCAGAACCGTGCTTCTGCT
GATCAGTGCTTTCGTCTCGCTCGCCGATGTGGCTGCCCTGTTTTCGCTCT
CTACCGAGGGCAAGAATGTGGCCGACAAACCTGAATTCGGTGTTCGCACA
CAACAAGCCAATTATGTACCGATCGGAAGCAGAATGGATTTCTACAATCC
TCACGAAGGTCAGGTCCGGTACGAATATGTGGTTCGCAGACTGGGAAGGA
GGATTTCATTCAGGAATGGCAGCCAATTTGAAATCGTCATTCCCAGACGA
CTGGACCCTATGCACGATGAGAAATGGCCGTTCACCATGGCTCTTGCCGA
TGAAGATAAATATGCCACAGTATTCATAAGAGACTTTACCATGCACGACA
GCGCAAATTTTAGTGAGCTTGCGGGTCAAGTGACTGGCAATACGGAAAGT
GGTATGCCTCTTAAGCACTACAAAATGGCAAAGAGAGACGCCGACCGAAA
GGTATGTTCTGGAAGCATCAGTGCAATCTCCACGACTGGCGTTAACGGTA
CAGCTACTTTTTGTTATACGGATGAGCTCAGAAACATGTCATGTGCCAAC
CGGAAAGACGGCGAATCTGTGCGCTTCACGATGAGGTGCTCAGAGGTTAG
GGTGGAGAGATTTGGGGGGAATGTCATTTTCGACAATGACTCCATTTGGT
GGTTGACGAGACTTGCCGGGAAGGATGTGGGTGGCCGCGGAGAAAAGAGC
CTCATACAGATGAACTCGCTCAGAGCATACAAGAAAGATGATGTCTCCCC
CAGTGCACTGATTGTGGCTGCCGTACTCACCGAGTTTCCCTCGCAAATTG
TGCTGCAGCAAAGACCCTTTTTCGTGGATGTGAGTGTGGTGATAGTGCCC
AACTGGTTAATTGTCAGCTCAGCGGTAGTAATTTGCTCTGTGTTGGTATT
GAGTGTTTCGGCGTCGGTGTATGCGAAAGTGAAGAACCTTGTGGTGCTGA
ATAACTGGCAAGAACTGCTGATATCGAACCTGCTTGAGCCTCTCGATTGT
TTGAACAGAGTCAACAAAAGAAAGTTTCGATGTGTTGTGGGCGAGGCTAA
TGAATACTCGGAAAAGAAGTATCGCTTCTACGTGGAACCGCATCCCGGTG
TGGCACCTATTGCTTTAGCGCGACGCCAAGATGTTGGGTGA

protein sequence of Gcaud10143.t1

>Gcaud10143.t1 ID=Gcaud10143.t1|Name=Gcaud10143.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=497bp
MVRITGDEAPILAIIEVLKLVLIAACLSALKNLDNIWCMYSLQRDGHVTL
YENDIGRLTDKGFIKLITSCYSFAARRDKLNKETWEALNANDARRKALIN
TTRARKQLISVRTVLLLISAFVSLADVAALFSLSTEGKNVADKPEFGVRT
QQANYVPIGSRMDFYNPHEGQVRYEYVVRRLGRRISFRNGSQFEIVIPRR
LDPMHDEKWPFTMALADEDKYATVFIRDFTMHDSANFSELAGQVTGNTES
GMPLKHYKMAKRDADRKVCSGSISAISTTGVNGTATFCYTDELRNMSCAN
RKDGESVRFTMRCSEVRVERFGGNVIFDNDSIWWLTRLAGKDVGGRGEKS
LIQMNSLRAYKKDDVSPSALIVAAVLTEFPSQIVLQQRPFFVDVSVVIVP
NWLIVSSAVVICSVLVLSVSASVYAKVKNLVVLNNWQELLISNLLEPLDC
LNRVNKRKFRCVVGEANEYSEKKYRFYVEPHPGVAPIALARRQDVG*

mRNA from alignment at NODE_596_length_21163_cov_5.239038:9898..11388+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10143.t1 ID=Gcaud10143.t1|Name=Gcaud10143.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1491bp|location=Sequence derived from alignment at NODE_596_length_21163_cov_5.239038:9898..11388+ (Gracilaria caudata M_176_S67 male)
ATGGTGCGTATTACCGGAGACGAGGCCCCAATACTAGCCATCATCGAGGT
GCTCAAGCTTGTCCTCATCGCCGCATGCTTATCAGCGCTGAAAAACCTCG
ACAACATATGGTGCATGTATTCGTTGCAGCGAGATGGCCACGTGACGCTT
TACGAGAACGACATTGGTCGACTTACCGACAAGGGATTCATCAAACTCAT
TACCTCCTGTTACTCATTCGCCGCCAGACGGGACAAACTGAACAAGGAAA
CGTGGGAGGCGTTGAACGCAAACGATGCGCGTCGGAAGGCGCTCATTAAC
ACTACTAGAGCTCGTAAACAATTGATCAGCGTCAGAACCGTGCTTCTGCT
GATCAGTGCTTTCGTCTCGCTCGCCGATGTGGCTGCCCTGTTTTCGCTCT
CTACCGAGGGCAAGAATGTGGCCGACAAACCTGAATTCGGTGTTCGCACA
CAACAAGCCAATTATGTACCGATCGGAAGCAGAATGGATTTCTACAATCC
TCACGAAGGTCAGGTCCGGTACGAATATGTGGTTCGCAGACTGGGAAGGA
GGATTTCATTCAGGAATGGCAGCCAATTTGAAATCGTCATTCCCAGACGA
CTGGACCCTATGCACGATGAGAAATGGCCGTTCACCATGGCTCTTGCCGA
TGAAGATAAATATGCCACAGTATTCATAAGAGACTTTACCATGCACGACA
GCGCAAATTTTAGTGAGCTTGCGGGTCAAGTGACTGGCAATACGGAAAGT
GGTATGCCTCTTAAGCACTACAAAATGGCAAAGAGAGACGCCGACCGAAA
GGTATGTTCTGGAAGCATCAGTGCAATCTCCACGACTGGCGTTAACGGTA
CAGCTACTTTTTGTTATACGGATGAGCTCAGAAACATGTCATGTGCCAAC
CGGAAAGACGGCGAATCTGTGCGCTTCACGATGAGGTGCTCAGAGGTTAG
GGTGGAGAGATTTGGGGGGAATGTCATTTTCGACAATGACTCCATTTGGT
GGTTGACGAGACTTGCCGGGAAGGATGTGGGTGGCCGCGGAGAAAAGAGC
CTCATACAGATGAACTCGCTCAGAGCATACAAGAAAGATGATGTCTCCCC
CAGTGCACTGATTGTGGCTGCCGTACTCACCGAGTTTCCCTCGCAAATTG
TGCTGCAGCAAAGACCCTTTTTCGTGGATGTGAGTGTGGTGATAGTGCCC
AACTGGTTAATTGTCAGCTCAGCGGTAGTAATTTGCTCTGTGTTGGTATT
GAGTGTTTCGGCGTCGGTGTATGCGAAAGTGAAGAACCTTGTGGTGCTGA
ATAACTGGCAAGAACTGCTGATATCGAACCTGCTTGAGCCTCTCGATTGT
TTGAACAGAGTCAACAAAAGAAAGTTTCGATGTGTTGTGGGCGAGGCTAA
TGAATACTCGGAAAAGAAGTATCGCTTCTACGTGGAACCGCATCCCGGTG
TGGCACCTATTGCTTTAGCGCGACGCCAAGATGTTGGGTGA

Coding sequence (CDS) from alignment at NODE_596_length_21163_cov_5.239038:9898..11388+

>Gcaud10143.t1 ID=Gcaud10143.t1|Name=Gcaud10143.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1491bp|location=Sequence derived from alignment at NODE_596_length_21163_cov_5.239038:9898..11388+ (Gracilaria caudata M_176_S67 male)
ATGGTGCGTATTACCGGAGACGAGGCCCCAATACTAGCCATCATCGAGGT
GCTCAAGCTTGTCCTCATCGCCGCATGCTTATCAGCGCTGAAAAACCTCG
ACAACATATGGTGCATGTATTCGTTGCAGCGAGATGGCCACGTGACGCTT
TACGAGAACGACATTGGTCGACTTACCGACAAGGGATTCATCAAACTCAT
TACCTCCTGTTACTCATTCGCCGCCAGACGGGACAAACTGAACAAGGAAA
CGTGGGAGGCGTTGAACGCAAACGATGCGCGTCGGAAGGCGCTCATTAAC
ACTACTAGAGCTCGTAAACAATTGATCAGCGTCAGAACCGTGCTTCTGCT
GATCAGTGCTTTCGTCTCGCTCGCCGATGTGGCTGCCCTGTTTTCGCTCT
CTACCGAGGGCAAGAATGTGGCCGACAAACCTGAATTCGGTGTTCGCACA
CAACAAGCCAATTATGTACCGATCGGAAGCAGAATGGATTTCTACAATCC
TCACGAAGGTCAGGTCCGGTACGAATATGTGGTTCGCAGACTGGGAAGGA
GGATTTCATTCAGGAATGGCAGCCAATTTGAAATCGTCATTCCCAGACGA
CTGGACCCTATGCACGATGAGAAATGGCCGTTCACCATGGCTCTTGCCGA
TGAAGATAAATATGCCACAGTATTCATAAGAGACTTTACCATGCACGACA
GCGCAAATTTTAGTGAGCTTGCGGGTCAAGTGACTGGCAATACGGAAAGT
GGTATGCCTCTTAAGCACTACAAAATGGCAAAGAGAGACGCCGACCGAAA
GGTATGTTCTGGAAGCATCAGTGCAATCTCCACGACTGGCGTTAACGGTA
CAGCTACTTTTTGTTATACGGATGAGCTCAGAAACATGTCATGTGCCAAC
CGGAAAGACGGCGAATCTGTGCGCTTCACGATGAGGTGCTCAGAGGTTAG
GGTGGAGAGATTTGGGGGGAATGTCATTTTCGACAATGACTCCATTTGGT
GGTTGACGAGACTTGCCGGGAAGGATGTGGGTGGCCGCGGAGAAAAGAGC
CTCATACAGATGAACTCGCTCAGAGCATACAAGAAAGATGATGTCTCCCC
CAGTGCACTGATTGTGGCTGCCGTACTCACCGAGTTTCCCTCGCAAATTG
TGCTGCAGCAAAGACCCTTTTTCGTGGATGTGAGTGTGGTGATAGTGCCC
AACTGGTTAATTGTCAGCTCAGCGGTAGTAATTTGCTCTGTGTTGGTATT
GAGTGTTTCGGCGTCGGTGTATGCGAAAGTGAAGAACCTTGTGGTGCTGA
ATAACTGGCAAGAACTGCTGATATCGAACCTGCTTGAGCCTCTCGATTGT
TTGAACAGAGTCAACAAAAGAAAGTTTCGATGTGTTGTGGGCGAGGCTAA
TGAATACTCGGAAAAGAAGTATCGCTTCTACGTGGAACCGCATCCCGGTG
TGGCACCTATTGCTTTAGCGCGACGCCAAGATGTTGGGTGA