Gcaud10141.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10141.t1
Unique NameGcaud10141.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length232
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_596_length_21163_cov_5.239038contigNODE_596_length_21163_cov_5.239038:969..1664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10141Gcaud10141Gracilaria caudata M_176_S67 malegeneNODE_596_length_21163_cov_5.239038 969..1664 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10141.t1.start1Gcaud10141.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_596_length_21163_cov_5.239038 969..971 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10141.t1.CDS1Gcaud10141.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_596_length_21163_cov_5.239038 969..1664 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10141.t1.exon1Gcaud10141.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_596_length_21163_cov_5.239038 969..1664 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10141.t1.stop1Gcaud10141.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_596_length_21163_cov_5.239038 1662..1664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10141.t1Gcaud10141.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_596_length_21163_cov_5.239038 969..1664 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10141.t1 ID=Gcaud10141.t1|Name=Gcaud10141.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=232bp
MNIIAAFFLFVAFVGPAVSQVVDICPSFCIPNPNGFVEAIEQCNVPSRLN
LCQVEDCFSFDDGSPGFSCTVPQNSFIVSNSVFDTESADLVVDYSWGPEQ
RDLDSATAFLDNVSGNACDLPGPFMVFGGDNTGNGGTEFTIVDIELARQQ
SFWTDSTSVTARADWFGEANQGPATLTVYLKDRATASPIPGTQLSMLINP
GAGTGCAVTPVGIVFIDRGQFATRVALSTLL*
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spliced messenger RNA

>Gcaud10141.t1 ID=Gcaud10141.t1|Name=Gcaud10141.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=696bp|location=Sequence derived from alignment at NODE_596_length_21163_cov_5.239038:969..1664+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACATCATCGCAGCCTTCTTTCTCTTCGTGGCCTTTGTAGGCCCAGC
CGTCTCTCAGGTGGTTGATATTTGTCCCAGTTTCTGCATCCCTAACCCCA
ATGGATTCGTAGAGGCTATAGAGCAATGTAACGTGCCTTCTCGTCTTAAC
CTGTGCCAGGTGGAAGACTGCTTCAGCTTCGACGACGGATCTCCCGGATT
CAGTTGCACTGTACCACAGAATTCGTTCATTGTGAGCAACTCGGTGTTCG
ATACCGAGTCGGCTGATTTAGTTGTTGACTATTCTTGGGGTCCAGAGCAG
AGGGATCTTGATTCTGCAACCGCCTTCTTGGACAACGTATCTGGAAATGC
ATGCGATCTCCCAGGCCCATTCATGGTGTTTGGTGGTGACAACACAGGGA
ATGGTGGCACGGAATTTACTATCGTGGACATCGAACTGGCACGTCAGCAG
TCTTTCTGGACTGATTCCACTTCCGTCACCGCTCGTGCGGATTGGTTTGG
GGAAGCGAACCAGGGTCCGGCTACTCTGACGGTTTATCTGAAGGATAGGG
CGACCGCAAGTCCTATTCCCGGAACTCAGCTTTCGATGTTGATCAACCCT
GGAGCAGGTACAGGGTGCGCTGTTACTCCAGTGGGCATTGTGTTCATTGA
CCGTGGACAATTTGCAACTCGCGTCGCTCTCTCTACATTACTGTAA
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protein sequence of Gcaud10141.t1

>Gcaud10141.t1 ID=Gcaud10141.t1|Name=Gcaud10141.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=232bp
MNIIAAFFLFVAFVGPAVSQVVDICPSFCIPNPNGFVEAIEQCNVPSRLN
LCQVEDCFSFDDGSPGFSCTVPQNSFIVSNSVFDTESADLVVDYSWGPEQ
RDLDSATAFLDNVSGNACDLPGPFMVFGGDNTGNGGTEFTIVDIELARQQ
SFWTDSTSVTARADWFGEANQGPATLTVYLKDRATASPIPGTQLSMLINP
GAGTGCAVTPVGIVFIDRGQFATRVALSTLL*
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mRNA from alignment at NODE_596_length_21163_cov_5.239038:969..1664+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10141.t1 ID=Gcaud10141.t1|Name=Gcaud10141.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=696bp|location=Sequence derived from alignment at NODE_596_length_21163_cov_5.239038:969..1664+ (Gracilaria caudata M_176_S67 male)
ATGAACATCATCGCAGCCTTCTTTCTCTTCGTGGCCTTTGTAGGCCCAGC
CGTCTCTCAGGTGGTTGATATTTGTCCCAGTTTCTGCATCCCTAACCCCA
ATGGATTCGTAGAGGCTATAGAGCAATGTAACGTGCCTTCTCGTCTTAAC
CTGTGCCAGGTGGAAGACTGCTTCAGCTTCGACGACGGATCTCCCGGATT
CAGTTGCACTGTACCACAGAATTCGTTCATTGTGAGCAACTCGGTGTTCG
ATACCGAGTCGGCTGATTTAGTTGTTGACTATTCTTGGGGTCCAGAGCAG
AGGGATCTTGATTCTGCAACCGCCTTCTTGGACAACGTATCTGGAAATGC
ATGCGATCTCCCAGGCCCATTCATGGTGTTTGGTGGTGACAACACAGGGA
ATGGTGGCACGGAATTTACTATCGTGGACATCGAACTGGCACGTCAGCAG
TCTTTCTGGACTGATTCCACTTCCGTCACCGCTCGTGCGGATTGGTTTGG
GGAAGCGAACCAGGGTCCGGCTACTCTGACGGTTTATCTGAAGGATAGGG
CGACCGCAAGTCCTATTCCCGGAACTCAGCTTTCGATGTTGATCAACCCT
GGAGCAGGTACAGGGTGCGCTGTTACTCCAGTGGGCATTGTGTTCATTGA
CCGTGGACAATTTGCAACTCGCGTCGCTCTCTCTACATTACTGTAA
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Coding sequence (CDS) from alignment at NODE_596_length_21163_cov_5.239038:969..1664+

>Gcaud10141.t1 ID=Gcaud10141.t1|Name=Gcaud10141.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=696bp|location=Sequence derived from alignment at NODE_596_length_21163_cov_5.239038:969..1664+ (Gracilaria caudata M_176_S67 male)
ATGAACATCATCGCAGCCTTCTTTCTCTTCGTGGCCTTTGTAGGCCCAGC
CGTCTCTCAGGTGGTTGATATTTGTCCCAGTTTCTGCATCCCTAACCCCA
ATGGATTCGTAGAGGCTATAGAGCAATGTAACGTGCCTTCTCGTCTTAAC
CTGTGCCAGGTGGAAGACTGCTTCAGCTTCGACGACGGATCTCCCGGATT
CAGTTGCACTGTACCACAGAATTCGTTCATTGTGAGCAACTCGGTGTTCG
ATACCGAGTCGGCTGATTTAGTTGTTGACTATTCTTGGGGTCCAGAGCAG
AGGGATCTTGATTCTGCAACCGCCTTCTTGGACAACGTATCTGGAAATGC
ATGCGATCTCCCAGGCCCATTCATGGTGTTTGGTGGTGACAACACAGGGA
ATGGTGGCACGGAATTTACTATCGTGGACATCGAACTGGCACGTCAGCAG
TCTTTCTGGACTGATTCCACTTCCGTCACCGCTCGTGCGGATTGGTTTGG
GGAAGCGAACCAGGGTCCGGCTACTCTGACGGTTTATCTGAAGGATAGGG
CGACCGCAAGTCCTATTCCCGGAACTCAGCTTTCGATGTTGATCAACCCT
GGAGCAGGTACAGGGTGCGCTGTTACTCCAGTGGGCATTGTGTTCATTGA
CCGTGGACAATTTGCAACTCGCGTCGCTCTCTCTACATTACTGTAA
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