Gcaud10140.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10140.t1
Unique NameGcaud10140.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length380
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_5992_length_1329_cov_2.714863contigNODE_5992_length_1329_cov_2.714863:56..1195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMS488CT
PFAMsTPT
Max annot lvl2759|Eukaryota
KEGG koko:K14301,ko:K15285
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
Evalue7.9e-115
EggNOG OGsKOG1441@1|root,KOG1441@2759|Eukaryota
Descriptioncarbohydrate transport
COG categoryZ
BRITEko00000,ko00001,ko00002,ko02000,ko03019,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10140Gcaud10140Gracilaria caudata M_176_S67 malegeneNODE_5992_length_1329_cov_2.714863 56..1195 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10140.t1.stop1Gcaud10140.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_5992_length_1329_cov_2.714863 56..58 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10140.t1.CDS1Gcaud10140.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_5992_length_1329_cov_2.714863 56..1195 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10140.t1.exon1Gcaud10140.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_5992_length_1329_cov_2.714863 56..1195 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10140.t1.start1Gcaud10140.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_5992_length_1329_cov_2.714863 1193..1195 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10140.t1Gcaud10140.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_5992_length_1329_cov_2.714863 56..1195 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10140.t1 ID=Gcaud10140.t1|Name=Gcaud10140.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=380bp
MPSAMERVDDAHHSASLLPSLQKGAHSAPAPAAGRLRAIAAGIDMRTSAS
MLLNFCSSVSIVVVNKIVMDKYGFRFAVTLTAFHLCCTFLLLLLTARCGV
FEIKRLPVRDVSKLAAGTMGFICLTNLSLQHNSVGFYQVMKVMTTPTVVL
IEALLYQKYLERNLRLSLLPVCLGVIFTTATDFRLNLVGSLYAVAGVVVT
SFYQIWSGTLQRSLDCNALQLQTYVAPLAALFILPFVPLLDNYNVNDLHS
IWFYSFNADNLRVIALTGFFGFLVNVSIFLVIGRSSAVSYNILGHCKTVV
VLLSDFLLFGRPATVKSAFGIVLTLLGVFWYTSLKLEKARLDKEARERAA
SSELKQPHNGASGDDKLPMSTTTASSREQ*
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spliced messenger RNA

>Gcaud10140.t1 ID=Gcaud10140.t1|Name=Gcaud10140.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at NODE_5992_length_1329_cov_2.714863:56..1195- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTCCGCGATGGAGCGCGTCGACGACGCGCACCACTCCGCGTCGCT
GCTGCCGTCGCTGCAAAAGGGCGCGCACTCCGCGCCCGCGCCCGCCGCCG
GCCGGCTGCGCGCCATAGCCGCCGGCATCGACATGCGCACCAGCGCGTCC
ATGCTGCTCAACTTTTGCTCGTCCGTGTCCATCGTGGTGGTCAACAAGAT
CGTCATGGACAAGTACGGCTTCCGTTTCGCCGTCACGCTCACCGCCTTCC
ATCTGTGCTGCACCTTCTTGTTGCTGCTGCTCACCGCGCGCTGCGGCGTG
TTCGAGATCAAGCGCCTGCCCGTGCGCGACGTGTCGAAGCTGGCCGCCGG
TACCATGGGTTTCATCTGTCTCACCAACCTCAGCTTGCAGCACAACAGCG
TGGGATTTTACCAGGTGATGAAGGTGATGACCACGCCCACGGTGGTGCTC
ATCGAGGCGCTGCTGTACCAAAAGTATCTGGAGCGCAACCTGCGTCTGTC
GCTGCTGCCGGTGTGTCTGGGCGTCATTTTCACCACCGCCACCGACTTTC
GTCTCAACCTGGTGGGCTCTCTGTACGCGGTGGCGGGCGTGGTGGTCACC
TCCTTCTACCAGATCTGGTCCGGCACGCTGCAGCGCTCGTTGGACTGCAA
CGCGCTGCAGCTGCAGACGTACGTGGCGCCGCTGGCCGCGCTGTTCATCC
TGCCGTTCGTGCCGCTGCTGGACAACTACAACGTCAACGACCTGCACTCC
ATCTGGTTCTACAGCTTCAACGCCGACAATCTGCGCGTGATTGCGCTCAC
CGGTTTCTTCGGCTTTCTGGTCAACGTGTCCATCTTCCTGGTGATCGGTC
GCTCCAGCGCGGTGTCGTACAACATCCTGGGCCACTGCAAGACGGTGGTG
GTGCTGCTGTCCGATTTCCTGCTGTTTGGGCGACCGGCCACCGTCAAGTC
CGCGTTCGGCATTGTGCTCACGCTGCTGGGCGTGTTTTGGTACACCAGCC
TCAAGCTGGAGAAGGCGCGACTGGACAAGGAGGCGCGCGAGCGCGCCGCG
TCCTCCGAACTCAAACAGCCGCACAACGGCGCCAGCGGCGACGACAAGCT
GCCGATGTCCACCACCACCGCCTCCTCCAGAGAGCAATAA
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protein sequence of Gcaud10140.t1

>Gcaud10140.t1 ID=Gcaud10140.t1|Name=Gcaud10140.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=380bp
MPSAMERVDDAHHSASLLPSLQKGAHSAPAPAAGRLRAIAAGIDMRTSAS
MLLNFCSSVSIVVVNKIVMDKYGFRFAVTLTAFHLCCTFLLLLLTARCGV
FEIKRLPVRDVSKLAAGTMGFICLTNLSLQHNSVGFYQVMKVMTTPTVVL
IEALLYQKYLERNLRLSLLPVCLGVIFTTATDFRLNLVGSLYAVAGVVVT
SFYQIWSGTLQRSLDCNALQLQTYVAPLAALFILPFVPLLDNYNVNDLHS
IWFYSFNADNLRVIALTGFFGFLVNVSIFLVIGRSSAVSYNILGHCKTVV
VLLSDFLLFGRPATVKSAFGIVLTLLGVFWYTSLKLEKARLDKEARERAA
SSELKQPHNGASGDDKLPMSTTTASSREQ*
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mRNA from alignment at NODE_5992_length_1329_cov_2.714863:56..1195-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10140.t1 ID=Gcaud10140.t1|Name=Gcaud10140.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1140bp|location=Sequence derived from alignment at NODE_5992_length_1329_cov_2.714863:56..1195- (Gracilaria caudata M_176_S67 male)
ATGCCGTCCGCGATGGAGCGCGTCGACGACGCGCACCACTCCGCGTCGCT
GCTGCCGTCGCTGCAAAAGGGCGCGCACTCCGCGCCCGCGCCCGCCGCCG
GCCGGCTGCGCGCCATAGCCGCCGGCATCGACATGCGCACCAGCGCGTCC
ATGCTGCTCAACTTTTGCTCGTCCGTGTCCATCGTGGTGGTCAACAAGAT
CGTCATGGACAAGTACGGCTTCCGTTTCGCCGTCACGCTCACCGCCTTCC
ATCTGTGCTGCACCTTCTTGTTGCTGCTGCTCACCGCGCGCTGCGGCGTG
TTCGAGATCAAGCGCCTGCCCGTGCGCGACGTGTCGAAGCTGGCCGCCGG
TACCATGGGTTTCATCTGTCTCACCAACCTCAGCTTGCAGCACAACAGCG
TGGGATTTTACCAGGTGATGAAGGTGATGACCACGCCCACGGTGGTGCTC
ATCGAGGCGCTGCTGTACCAAAAGTATCTGGAGCGCAACCTGCGTCTGTC
GCTGCTGCCGGTGTGTCTGGGCGTCATTTTCACCACCGCCACCGACTTTC
GTCTCAACCTGGTGGGCTCTCTGTACGCGGTGGCGGGCGTGGTGGTCACC
TCCTTCTACCAGATCTGGTCCGGCACGCTGCAGCGCTCGTTGGACTGCAA
CGCGCTGCAGCTGCAGACGTACGTGGCGCCGCTGGCCGCGCTGTTCATCC
TGCCGTTCGTGCCGCTGCTGGACAACTACAACGTCAACGACCTGCACTCC
ATCTGGTTCTACAGCTTCAACGCCGACAATCTGCGCGTGATTGCGCTCAC
CGGTTTCTTCGGCTTTCTGGTCAACGTGTCCATCTTCCTGGTGATCGGTC
GCTCCAGCGCGGTGTCGTACAACATCCTGGGCCACTGCAAGACGGTGGTG
GTGCTGCTGTCCGATTTCCTGCTGTTTGGGCGACCGGCCACCGTCAAGTC
CGCGTTCGGCATTGTGCTCACGCTGCTGGGCGTGTTTTGGTACACCAGCC
TCAAGCTGGAGAAGGCGCGACTGGACAAGGAGGCGCGCGAGCGCGCCGCG
TCCTCCGAACTCAAACAGCCGCACAACGGCGCCAGCGGCGACGACAAGCT
GCCGATGTCCACCACCACCGCCTCCTCCAGAGAGCAATAA
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Coding sequence (CDS) from alignment at NODE_5992_length_1329_cov_2.714863:56..1195-

>Gcaud10140.t1 ID=Gcaud10140.t1|Name=Gcaud10140.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1140bp|location=Sequence derived from alignment at NODE_5992_length_1329_cov_2.714863:56..1195- (Gracilaria caudata M_176_S67 male)
ATGCCGTCCGCGATGGAGCGCGTCGACGACGCGCACCACTCCGCGTCGCT
GCTGCCGTCGCTGCAAAAGGGCGCGCACTCCGCGCCCGCGCCCGCCGCCG
GCCGGCTGCGCGCCATAGCCGCCGGCATCGACATGCGCACCAGCGCGTCC
ATGCTGCTCAACTTTTGCTCGTCCGTGTCCATCGTGGTGGTCAACAAGAT
CGTCATGGACAAGTACGGCTTCCGTTTCGCCGTCACGCTCACCGCCTTCC
ATCTGTGCTGCACCTTCTTGTTGCTGCTGCTCACCGCGCGCTGCGGCGTG
TTCGAGATCAAGCGCCTGCCCGTGCGCGACGTGTCGAAGCTGGCCGCCGG
TACCATGGGTTTCATCTGTCTCACCAACCTCAGCTTGCAGCACAACAGCG
TGGGATTTTACCAGGTGATGAAGGTGATGACCACGCCCACGGTGGTGCTC
ATCGAGGCGCTGCTGTACCAAAAGTATCTGGAGCGCAACCTGCGTCTGTC
GCTGCTGCCGGTGTGTCTGGGCGTCATTTTCACCACCGCCACCGACTTTC
GTCTCAACCTGGTGGGCTCTCTGTACGCGGTGGCGGGCGTGGTGGTCACC
TCCTTCTACCAGATCTGGTCCGGCACGCTGCAGCGCTCGTTGGACTGCAA
CGCGCTGCAGCTGCAGACGTACGTGGCGCCGCTGGCCGCGCTGTTCATCC
TGCCGTTCGTGCCGCTGCTGGACAACTACAACGTCAACGACCTGCACTCC
ATCTGGTTCTACAGCTTCAACGCCGACAATCTGCGCGTGATTGCGCTCAC
CGGTTTCTTCGGCTTTCTGGTCAACGTGTCCATCTTCCTGGTGATCGGTC
GCTCCAGCGCGGTGTCGTACAACATCCTGGGCCACTGCAAGACGGTGGTG
GTGCTGCTGTCCGATTTCCTGCTGTTTGGGCGACCGGCCACCGTCAAGTC
CGCGTTCGGCATTGTGCTCACGCTGCTGGGCGTGTTTTGGTACACCAGCC
TCAAGCTGGAGAAGGCGCGACTGGACAAGGAGGCGCGCGAGCGCGCCGCG
TCCTCCGAACTCAAACAGCCGCACAACGGCGCCAGCGGCGACGACAAGCT
GCCGATGTCCACCACCACCGCCTCCTCCAGAGAGCAATAA
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