Gcaud10133.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10133.t1
Unique NameGcaud10133.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length170
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_701_length_19359_cov_4.591706contigNODE_701_length_19359_cov_4.591706:17132..17641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10133Gcaud10133Gracilaria caudata M_176_S67 malegeneNODE_701_length_19359_cov_4.591706 17132..17641 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10133.t1.stop1Gcaud10133.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_701_length_19359_cov_4.591706 17132..17134 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10133.t1.CDS1Gcaud10133.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_701_length_19359_cov_4.591706 17132..17641 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10133.t1.exon1Gcaud10133.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_701_length_19359_cov_4.591706 17132..17641 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10133.t1.start1Gcaud10133.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_701_length_19359_cov_4.591706 17639..17641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10133.t1Gcaud10133.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_701_length_19359_cov_4.591706 17132..17641 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10133.t1 ID=Gcaud10133.t1|Name=Gcaud10133.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=170bp
MPDALFVFSSASPACFTTMSLEHDSNTDKQSSSDSLSDVPSVQSVSQLPN
AAKQPHESPSVATEHSAVTSSSSSSPSTQPTAPGDAGAWSIWDVTPVVRA
VDSLFESDAVARRDHRTLTNKHIKRRRDGRVSLSMNDANVIHTADLIDPL
QLLHILNQKRTKAVPHPLV*
back to top

spliced messenger RNA

>Gcaud10133.t1 ID=Gcaud10133.t1|Name=Gcaud10133.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=510bp|location=Sequence derived from alignment at NODE_701_length_19359_cov_4.591706:17132..17641- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAGACGCGCTGTTTGTGTTCTCGTCCGCGTCACCCGCGTGTTTCAC
AACCATGTCGCTCGAACATGACTCAAACACGGACAAACAATCCTCCTCCG
ATTCCTTGAGCGACGTACCCAGCGTTCAGAGCGTATCACAACTACCGAAC
GCCGCCAAGCAGCCGCACGAGTCGCCGTCCGTCGCCACCGAACACAGCGC
CGTCACGTCCTCTTCGTCCTCGTCGCCGTCCACCCAACCCACCGCGCCAG
GCGACGCGGGCGCGTGGAGCATTTGGGATGTCACACCCGTCGTCCGTGCC
GTCGATTCTCTGTTTGAAAGCGACGCGGTTGCGCGTCGCGACCACCGTAC
TTTGACTAACAAGCACATCAAACGAAGGAGGGATGGGAGGGTTTCGCTCA
GTATGAATGACGCCAATGTCATTCATACAGCTGACTTGATTGACCCGTTG
CAGCTTTTGCACATCTTGAACCAGAAGAGAACTAAAGCTGTGCCTCATCC
GCTGGTTTAG
back to top

protein sequence of Gcaud10133.t1

>Gcaud10133.t1 ID=Gcaud10133.t1|Name=Gcaud10133.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=170bp
MPDALFVFSSASPACFTTMSLEHDSNTDKQSSSDSLSDVPSVQSVSQLPN
AAKQPHESPSVATEHSAVTSSSSSSPSTQPTAPGDAGAWSIWDVTPVVRA
VDSLFESDAVARRDHRTLTNKHIKRRRDGRVSLSMNDANVIHTADLIDPL
QLLHILNQKRTKAVPHPLV*
back to top

mRNA from alignment at NODE_701_length_19359_cov_4.591706:17132..17641-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10133.t1 ID=Gcaud10133.t1|Name=Gcaud10133.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=510bp|location=Sequence derived from alignment at NODE_701_length_19359_cov_4.591706:17132..17641- (Gracilaria caudata M_176_S67 male)
ATGCCAGACGCGCTGTTTGTGTTCTCGTCCGCGTCACCCGCGTGTTTCAC
AACCATGTCGCTCGAACATGACTCAAACACGGACAAACAATCCTCCTCCG
ATTCCTTGAGCGACGTACCCAGCGTTCAGAGCGTATCACAACTACCGAAC
GCCGCCAAGCAGCCGCACGAGTCGCCGTCCGTCGCCACCGAACACAGCGC
CGTCACGTCCTCTTCGTCCTCGTCGCCGTCCACCCAACCCACCGCGCCAG
GCGACGCGGGCGCGTGGAGCATTTGGGATGTCACACCCGTCGTCCGTGCC
GTCGATTCTCTGTTTGAAAGCGACGCGGTTGCGCGTCGCGACCACCGTAC
TTTGACTAACAAGCACATCAAACGAAGGAGGGATGGGAGGGTTTCGCTCA
GTATGAATGACGCCAATGTCATTCATACAGCTGACTTGATTGACCCGTTG
CAGCTTTTGCACATCTTGAACCAGAAGAGAACTAAAGCTGTGCCTCATCC
GCTGGTTTAG
back to top

Coding sequence (CDS) from alignment at NODE_701_length_19359_cov_4.591706:17132..17641-

>Gcaud10133.t1 ID=Gcaud10133.t1|Name=Gcaud10133.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=510bp|location=Sequence derived from alignment at NODE_701_length_19359_cov_4.591706:17132..17641- (Gracilaria caudata M_176_S67 male)
ATGCCAGACGCGCTGTTTGTGTTCTCGTCCGCGTCACCCGCGTGTTTCAC
AACCATGTCGCTCGAACATGACTCAAACACGGACAAACAATCCTCCTCCG
ATTCCTTGAGCGACGTACCCAGCGTTCAGAGCGTATCACAACTACCGAAC
GCCGCCAAGCAGCCGCACGAGTCGCCGTCCGTCGCCACCGAACACAGCGC
CGTCACGTCCTCTTCGTCCTCGTCGCCGTCCACCCAACCCACCGCGCCAG
GCGACGCGGGCGCGTGGAGCATTTGGGATGTCACACCCGTCGTCCGTGCC
GTCGATTCTCTGTTTGAAAGCGACGCGGTTGCGCGTCGCGACCACCGTAC
TTTGACTAACAAGCACATCAAACGAAGGAGGGATGGGAGGGTTTCGCTCA
GTATGAATGACGCCAATGTCATTCATACAGCTGACTTGATTGACCCGTTG
CAGCTTTTGCACATCTTGAACCAGAAGAGAACTAAAGCTGTGCCTCATCC
GCTGGTTTAG
back to top