Gcaud10124.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10124.t1
Unique NameGcaud10124.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length445
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2122_length_6761_cov_5.181409contigNODE_2122_length_6761_cov_5.181409:3385..4786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD22852
PFAMsFAD_binding_3
Max annot lvl2759|Eukaryota
KEGG rclassRC00389
KEGG koko:K00480
KEGG ReactionR00818,R05632,R06915,R06936,R06939
KEGG Pathwayko00621,ko00624,ko00626,ko01100,ko01120,ko01220,map00621,map00624,map00626,map01100,map01120,map01220
Evalue1.13e-59
EggNOG OGsCOG0654@1|root,KOG2614@2759|Eukaryota
EC1.14.13.1
DescriptionFAD binding
COG categoryCH
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10124Gcaud10124Gracilaria caudata M_176_S67 malegeneNODE_2122_length_6761_cov_5.181409 3385..4786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10124.t1Gcaud10124.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2122_length_6761_cov_5.181409 3385..4786 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10124.t1.start1Gcaud10124.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_2122_length_6761_cov_5.181409 3385..3387 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10124.t1.CDS1Gcaud10124.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2122_length_6761_cov_5.181409 3385..4411 +
Gcaud10124.t1.CDS2Gcaud10124.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2122_length_6761_cov_5.181409 4479..4786 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10124.t1.exon1Gcaud10124.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2122_length_6761_cov_5.181409 3385..4411 +
Gcaud10124.t1.exon2Gcaud10124.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2122_length_6761_cov_5.181409 4479..4786 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10124.t1.intron1Gcaud10124.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2122_length_6761_cov_5.181409 4412..4478 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10124.t1.stop1Gcaud10124.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2122_length_6761_cov_5.181409 4784..4786 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10124.t1 ID=Gcaud10124.t1|Name=Gcaud10124.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=445bp
MAFAQPKCLFPSLLTAAPRRRDEKRFCSASAKPRRVGIAGAGIAGLATAL
ALQRTPATGVEHIEIFEPRLDADVGQGAALNLNGASAILGKVFGLPMHDI
GAPIDRVIAREVTGSTLFDVNVEQLVKTSAQATRELCINGRHSFMAVMRE
ELQAVLIKQIEERVTFHRGECKRVRGVHQEGSKAHFVLKDGTLSAPFDLL
VGADGVRSSVRTHVCGQATAPIYGGIRIQWAVAGGCTLPRGHLEQWFGDG
AYVVRYAARSKRQTFEMMACSFRQQQSGRENEEYEQDRLLRDDFLARLQR
SGMPAGVMDVLQRSERVIETAVYRQPVPAVWHRGPCCLVGDSAHAMPPYL
GQGANQAVQDAYCLAAAISGIGAQYGSLAEALQRYERIRRAPVEAILQTS
RLVSLLEIQDGPLASRVRNSVFRLLGAAGVPGATLVQAALPRVS*
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spliced messenger RNA

>Gcaud10124.t1 ID=Gcaud10124.t1|Name=Gcaud10124.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1335bp|location=Sequence derived from alignment at NODE_2122_length_6761_cov_5.181409:3385..4786+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCATTCGCTCAACCGAAGTGTTTGTTCCCGAGCTTGCTGACCGCAGC
ACCGCGCCGTCGTGATGAAAAGCGTTTTTGCAGCGCTTCTGCGAAGCCGC
GCCGCGTTGGAATTGCAGGAGCAGGCATTGCCGGGCTCGCAACTGCGTTG
GCGCTGCAACGCACGCCGGCGACCGGAGTGGAGCACATCGAAATATTTGA
GCCGCGTTTAGATGCGGACGTCGGTCAGGGAGCAGCACTGAACCTCAATG
GCGCATCGGCCATTCTCGGCAAGGTTTTCGGCCTTCCAATGCACGACATT
GGAGCGCCGATTGATCGGGTGATAGCAAGGGAAGTAACAGGGAGCACTCT
ATTTGATGTCAACGTTGAGCAGCTTGTGAAAACAAGTGCTCAGGCGACGA
GAGAACTGTGCATCAATGGGCGCCATTCGTTCATGGCGGTGATGAGAGAG
GAGCTACAAGCAGTGCTGATCAAACAAATAGAAGAGAGAGTGACGTTTCA
CAGAGGCGAATGCAAGCGCGTACGCGGCGTTCACCAGGAAGGCAGCAAGG
CACACTTTGTGTTGAAAGACGGCACGCTCTCGGCGCCATTTGACCTGCTT
GTGGGCGCCGATGGAGTGCGCTCGAGCGTGCGCACTCACGTATGCGGGCA
AGCAACGGCGCCGATTTACGGCGGGATCCGCATTCAATGGGCCGTGGCTG
GCGGCTGCACGCTGCCGCGGGGTCACTTGGAGCAGTGGTTCGGGGACGGC
GCGTACGTGGTGCGGTATGCGGCGCGCTCGAAAAGGCAAACGTTTGAGAT
GATGGCGTGCTCGTTTCGACAGCAGCAGAGTGGCAGAGAGAACGAGGAGT
ATGAACAAGACAGACTGTTGAGGGATGATTTCCTTGCAAGGCTGCAGAGA
TCGGGCATGCCCGCGGGCGTGATGGATGTGTTGCAGCGCAGTGAACGCGT
GATCGAGACGGCTGTGTATCGTCAGCCCGTGCCGGCTGTGTGGCATCGCG
GGCCGTGCTGCCTGGTGGGCGACTCAGCACATGCCATGCCGCCGTACCTC
GGGCAAGGAGCCAACCAAGCGGTGCAGGACGCGTACTGCTTGGCCGCCGC
CATCTCTGGCATCGGCGCGCAGTACGGCTCGCTCGCGGAGGCGTTGCAGA
GGTACGAACGCATCCGGCGCGCGCCGGTGGAGGCCATCCTGCAGACCAGC
CGCCTGGTGTCGCTGCTCGAGATCCAGGACGGGCCGCTGGCGAGCCGCGT
GCGCAACAGCGTGTTCCGGCTGCTGGGCGCGGCGGGCGTGCCCGGTGCAA
CGCTGGTGCAGGCGGCTCTGCCGCGCGTGTCGTGA
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protein sequence of Gcaud10124.t1

>Gcaud10124.t1 ID=Gcaud10124.t1|Name=Gcaud10124.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=445bp
MAFAQPKCLFPSLLTAAPRRRDEKRFCSASAKPRRVGIAGAGIAGLATAL
ALQRTPATGVEHIEIFEPRLDADVGQGAALNLNGASAILGKVFGLPMHDI
GAPIDRVIAREVTGSTLFDVNVEQLVKTSAQATRELCINGRHSFMAVMRE
ELQAVLIKQIEERVTFHRGECKRVRGVHQEGSKAHFVLKDGTLSAPFDLL
VGADGVRSSVRTHVCGQATAPIYGGIRIQWAVAGGCTLPRGHLEQWFGDG
AYVVRYAARSKRQTFEMMACSFRQQQSGRENEEYEQDRLLRDDFLARLQR
SGMPAGVMDVLQRSERVIETAVYRQPVPAVWHRGPCCLVGDSAHAMPPYL
GQGANQAVQDAYCLAAAISGIGAQYGSLAEALQRYERIRRAPVEAILQTS
RLVSLLEIQDGPLASRVRNSVFRLLGAAGVPGATLVQAALPRVS*
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mRNA from alignment at NODE_2122_length_6761_cov_5.181409:3385..4786+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10124.t1 ID=Gcaud10124.t1|Name=Gcaud10124.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1402bp|location=Sequence derived from alignment at NODE_2122_length_6761_cov_5.181409:3385..4786+ (Gracilaria caudata M_176_S67 male)
ATGGCATTCGCTCAACCGAAGTGTTTGTTCCCGAGCTTGCTGACCGCAGC
ACCGCGCCGTCGTGATGAAAAGCGTTTTTGCAGCGCTTCTGCGAAGCCGC
GCCGCGTTGGAATTGCAGGAGCAGGCATTGCCGGGCTCGCAACTGCGTTG
GCGCTGCAACGCACGCCGGCGACCGGAGTGGAGCACATCGAAATATTTGA
GCCGCGTTTAGATGCGGACGTCGGTCAGGGAGCAGCACTGAACCTCAATG
GCGCATCGGCCATTCTCGGCAAGGTTTTCGGCCTTCCAATGCACGACATT
GGAGCGCCGATTGATCGGGTGATAGCAAGGGAAGTAACAGGGAGCACTCT
ATTTGATGTCAACGTTGAGCAGCTTGTGAAAACAAGTGCTCAGGCGACGA
GAGAACTGTGCATCAATGGGCGCCATTCGTTCATGGCGGTGATGAGAGAG
GAGCTACAAGCAGTGCTGATCAAACAAATAGAAGAGAGAGTGACGTTTCA
CAGAGGCGAATGCAAGCGCGTACGCGGCGTTCACCAGGAAGGCAGCAAGG
CACACTTTGTGTTGAAAGACGGCACGCTCTCGGCGCCATTTGACCTGCTT
GTGGGCGCCGATGGAGTGCGCTCGAGCGTGCGCACTCACGTATGCGGGCA
AGCAACGGCGCCGATTTACGGCGGGATCCGCATTCAATGGGCCGTGGCTG
GCGGCTGCACGCTGCCGCGGGGTCACTTGGAGCAGTGGTTCGGGGACGGC
GCGTACGTGGTGCGGTATGCGGCGCGCTCGAAAAGGCAAACGTTTGAGAT
GATGGCGTGCTCGTTTCGACAGCAGCAGAGTGGCAGAGAGAACGAGGAGT
ATGAACAAGACAGACTGTTGAGGGATGATTTCCTTGCAAGGCTGCAGAGA
TCGGGCATGCCCGCGGGCGTGATGGATGTGTTGCAGCGCAGTGAACGCGT
GATCGAGACGGCTGTGTATCGTCAGCCCGTGCCGGCTGTGTGGCATCGCG
GGCCGTGCTGCCTGGTGGGCGACTCAGGTAAGTTGGCGAACCTGTGGTGA
GTGTGGCGCAGCTTCTAACCAGCAGCTCTTTTTCCCCCGCGCAGCACATG
CCATGCCGCCGTACCTCGGGCAAGGAGCCAACCAAGCGGTGCAGGACGCG
TACTGCTTGGCCGCCGCCATCTCTGGCATCGGCGCGCAGTACGGCTCGCT
CGCGGAGGCGTTGCAGAGGTACGAACGCATCCGGCGCGCGCCGGTGGAGG
CCATCCTGCAGACCAGCCGCCTGGTGTCGCTGCTCGAGATCCAGGACGGG
CCGCTGGCGAGCCGCGTGCGCAACAGCGTGTTCCGGCTGCTGGGCGCGGC
GGGCGTGCCCGGTGCAACGCTGGTGCAGGCGGCTCTGCCGCGCGTGTCGT
GA
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Coding sequence (CDS) from alignment at NODE_2122_length_6761_cov_5.181409:3385..4786+

>Gcaud10124.t1 ID=Gcaud10124.t1|Name=Gcaud10124.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1335bp|location=Sequence derived from alignment at NODE_2122_length_6761_cov_5.181409:3385..4786+ (Gracilaria caudata M_176_S67 male)
ATGGCATTCGCTCAACCGAAGTGTTTGTTCCCGAGCTTGCTGACCGCAGC
ACCGCGCCGTCGTGATGAAAAGCGTTTTTGCAGCGCTTCTGCGAAGCCGC
GCCGCGTTGGAATTGCAGGAGCAGGCATTGCCGGGCTCGCAACTGCGTTG
GCGCTGCAACGCACGCCGGCGACCGGAGTGGAGCACATCGAAATATTTGA
GCCGCGTTTAGATGCGGACGTCGGTCAGGGAGCAGCACTGAACCTCAATG
GCGCATCGGCCATTCTCGGCAAGGTTTTCGGCCTTCCAATGCACGACATT
GGAGCGCCGATTGATCGGGTGATAGCAAGGGAAGTAACAGGGAGCACTCT
ATTTGATGTCAACGTTGAGCAGCTTGTGAAAACAAGTGCTCAGGCGACGA
GAGAACTGTGCATCAATGGGCGCCATTCGTTCATGGCGGTGATGAGAGAG
GAGCTACAAGCAGTGCTGATCAAACAAATAGAAGAGAGAGTGACGTTTCA
CAGAGGCGAATGCAAGCGCGTACGCGGCGTTCACCAGGAAGGCAGCAAGG
CACACTTTGTGTTGAAAGACGGCACGCTCTCGGCGCCATTTGACCTGCTT
GTGGGCGCCGATGGAGTGCGCTCGAGCGTGCGCACTCACGTATGCGGGCA
AGCAACGGCGCCGATTTACGGCGGGATCCGCATTCAATGGGCCGTGGCTG
GCGGCTGCACGCTGCCGCGGGGTCACTTGGAGCAGTGGTTCGGGGACGGC
GCGTACGTGGTGCGGTATGCGGCGCGCTCGAAAAGGCAAACGTTTGAGAT
GATGGCGTGCTCGTTTCGACAGCAGCAGAGTGGCAGAGAGAACGAGGAGT
ATGAACAAGACAGACTGTTGAGGGATGATTTCCTTGCAAGGCTGCAGAGA
TCGGGCATGCCCGCGGGCGTGATGGATGTGTTGCAGCGCAGTGAACGCGT
GATCGAGACGGCTGTGTATCGTCAGCCCGTGCCGGCTGTGTGGCATCGCG
GGCCGTGCTGCCTGGTGGGCGACTCAGCACATGCCATGCCGCCGTACCTC
GGGCAAGGAGCCAACCAAGCGGTGCAGGACGCGTACTGCTTGGCCGCCGC
CATCTCTGGCATCGGCGCGCAGTACGGCTCGCTCGCGGAGGCGTTGCAGA
GGTACGAACGCATCCGGCGCGCGCCGGTGGAGGCCATCCTGCAGACCAGC
CGCCTGGTGTCGCTGCTCGAGATCCAGGACGGGCCGCTGGCGAGCCGCGT
GCGCAACAGCGTGTTCCGGCTGCTGGGCGCGGCGGGCGTGCCCGGTGCAA
CGCTGGTGCAGGCGGCTCTGCCGCGCGTGTCGTGA
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