Gcaud10122.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10122.t1
Unique NameGcaud10122.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length39
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_2122_length_6761_cov_5.181409contigNODE_2122_length_6761_cov_5.181409:824..1014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10122Gcaud10122Gracilaria caudata M_176_S67 malegeneNODE_2122_length_6761_cov_5.181409 824..1014 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10122.t1Gcaud10122.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_2122_length_6761_cov_5.181409 824..1014 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10122.t1.CDS1Gcaud10122.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_2122_length_6761_cov_5.181409 824..932 +
Gcaud10122.t1.CDS2Gcaud10122.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_2122_length_6761_cov_5.181409 1009..1014 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10122.t1.exon1Gcaud10122.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_2122_length_6761_cov_5.181409 824..932 +
Gcaud10122.t1.exon2Gcaud10122.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_2122_length_6761_cov_5.181409 1009..1014 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10122.t1.intron1Gcaud10122.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_2122_length_6761_cov_5.181409 933..1008 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10122.t1.stop1Gcaud10122.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_2122_length_6761_cov_5.181409 1012..1014 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10122.t1 ID=Gcaud10122.t1|Name=Gcaud10122.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=39bp
XSGPHVPKKKPIRAKMSAVKSNAVNECISWLDSNSGKH*
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spliced messenger RNA

>Gcaud10122.t1 ID=Gcaud10122.t1|Name=Gcaud10122.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=115bp|location=Sequence derived from alignment at NODE_2122_length_6761_cov_5.181409:824..1014+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
AAGTGGGCCTCATGTTCCGAAGAAGAAACCCATTCGAGCCAAGATGAGCG
CGGTAAAGTCGAATGCTGTGAACGAATGTATTTCATGGCTTGATTCTAAT
TCTGGCAAGCATTAG
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protein sequence of Gcaud10122.t1

>Gcaud10122.t1 ID=Gcaud10122.t1|Name=Gcaud10122.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=39bp
XSGPHVPKKKPIRAKMSAVKSNAVNECISWLDSNSGKH*
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mRNA from alignment at NODE_2122_length_6761_cov_5.181409:824..1014+

Legend: polypeptideCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10122.t1 ID=Gcaud10122.t1|Name=Gcaud10122.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=191bp|location=Sequence derived from alignment at NODE_2122_length_6761_cov_5.181409:824..1014+ (Gracilaria caudata M_176_S67 male)
AAGTGGGCCTCATGTTCCGAAGAAGAAACCCATTCGAGCCAAGATGAGCG
CGGTAAAGTCGAATGCTGTGAACGAATGTATTTCATGGCTTGATTCTAAT
TCTGGCAAGGTAAGTAAAGTGTTGAATTTCTCAAATATGGAGAAACGCTC
GAAACGAGGAGTGCTGATCTCAACTGGAAACAAAGCATTAG
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Coding sequence (CDS) from alignment at NODE_2122_length_6761_cov_5.181409:824..1014+

>Gcaud10122.t1 ID=Gcaud10122.t1|Name=Gcaud10122.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=115bp|location=Sequence derived from alignment at NODE_2122_length_6761_cov_5.181409:824..1014+ (Gracilaria caudata M_176_S67 male)
AAGTGGGCCTCATGTTCCGAAGAAGAAACCCATTCGAGCCAAGATGAGCG
CGGTAAAGTCGAATGCTGTGAACGAATGTATTTCATGGCTTGATTCTAAT
TCTGGCAAGCATTAG
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