Gcaud10114.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10114.t1
Unique NameGcaud10114.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length129
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_87_length_53860_cov_4.505235contigNODE_87_length_53860_cov_4.505235:43948..44491 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10114Gcaud10114Gracilaria caudata M_176_S67 malegeneNODE_87_length_53860_cov_4.505235 43948..44491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10114.t1Gcaud10114.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_87_length_53860_cov_4.505235 43948..44491 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10114.t1.stop1Gcaud10114.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_87_length_53860_cov_4.505235 43948..43950 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10114.t1.CDS1Gcaud10114.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_87_length_53860_cov_4.505235 43948..44011 -
Gcaud10114.t1.CDS2Gcaud10114.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_87_length_53860_cov_4.505235 44090..44242 -
Gcaud10114.t1.CDS3Gcaud10114.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_87_length_53860_cov_4.505235 44322..44491 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10114.t1.exon1Gcaud10114.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_87_length_53860_cov_4.505235 43948..44011 -
Gcaud10114.t1.exon2Gcaud10114.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_87_length_53860_cov_4.505235 44090..44242 -
Gcaud10114.t1.exon3Gcaud10114.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_87_length_53860_cov_4.505235 44322..44491 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10114.t1.intron1Gcaud10114.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_87_length_53860_cov_4.505235 44012..44089 -
Gcaud10114.t1.intron2Gcaud10114.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_87_length_53860_cov_4.505235 44243..44321 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10114.t1.start1Gcaud10114.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_87_length_53860_cov_4.505235 44489..44491 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10114.t1 ID=Gcaud10114.t1|Name=Gcaud10114.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=129bp
MEAREDNVEPAFRDANASIRNGTERSEGIHGVAIRSLISRLQHGQQMTVM
KDDQSATLNELKRLGEGIDVLNKESAEEYNALAPEFIRAARLAAQVKSDL
NNISRRMHSVQTKINELHALQQNEHDAR*
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spliced messenger RNA

>Gcaud10114.t1 ID=Gcaud10114.t1|Name=Gcaud10114.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=387bp|location=Sequence derived from alignment at NODE_87_length_53860_cov_4.505235:43948..44491- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCGCGTGAAGACAACGTCGAGCCGGCTTTCAGGGATGCGAATGC
TTCCATACGCAACGGAACAGAGCGTTCTGAAGGCATCCATGGGGTGGCGA
TTCGCTCACTGATCTCACGCCTTCAACATGGACAGCAAATGACCGTTATG
AAGGACGATCAATCCGCAACGCTCAACGAGCTAAAACGGTTGGGCGAAGG
GATTGATGTATTGAATAAAGAAAGTGCCGAAGAGTATAATGCTCTGGCAC
CGGAGTTCATTCGTGCTGCTCGACTTGCGGCACAGGTCAAGAGTGACTTG
AACAACATTTCCAGAAGAATGCATTCTGTTCAAACAAAGATCAACGAACT
ACATGCTCTGCAACAGAACGAACATGACGCACGGTAA
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protein sequence of Gcaud10114.t1

>Gcaud10114.t1 ID=Gcaud10114.t1|Name=Gcaud10114.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=129bp
MEAREDNVEPAFRDANASIRNGTERSEGIHGVAIRSLISRLQHGQQMTVM
KDDQSATLNELKRLGEGIDVLNKESAEEYNALAPEFIRAARLAAQVKSDL
NNISRRMHSVQTKINELHALQQNEHDAR*
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mRNA from alignment at NODE_87_length_53860_cov_4.505235:43948..44491-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10114.t1 ID=Gcaud10114.t1|Name=Gcaud10114.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=544bp|location=Sequence derived from alignment at NODE_87_length_53860_cov_4.505235:43948..44491- (Gracilaria caudata M_176_S67 male)
ATGGAGGCGCGTGAAGACAACGTCGAGCCGGCTTTCAGGGATGCGAATGC
TTCCATACGCAACGGAACAGAGCGTTCTGAAGGCATCCATGGGGTGGCGA
TTCGCTCACTGATCTCACGCCTTCAACATGGACAGCAAATGACCGTTATG
AAGGACGATCAATCCGCAACGTAGGTCAGATTATTTCTTTTCTTATTCGA
ATCCACTTGCTTCTCACACGCCGCGCCTTTGTGTGTCTTTCTGAGACAGG
CTCAACGAGCTAAAACGGTTGGGCGAAGGGATTGATGTATTGAATAAAGA
AAGTGCCGAAGAGTATAATGCTCTGGCACCGGAGTTCATTCGTGCTGCTC
GACTTGCGGCACAGGTCAAGAGTGACTTGAACAACATTTCCAGAAGAATG
CAGTAAGCTCTTGTCCATTCCTTCTCATTCAAAGGGACTTTTTTTGGAGC
AGTTTCTGACATTGTTACTATTCTTTACAGTTCTGTTCAAACAAAGATCA
ACGAACTACATGCTCTGCAACAGAACGAACATGACGCACGGTAA
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Coding sequence (CDS) from alignment at NODE_87_length_53860_cov_4.505235:43948..44491-

>Gcaud10114.t1 ID=Gcaud10114.t1|Name=Gcaud10114.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=387bp|location=Sequence derived from alignment at NODE_87_length_53860_cov_4.505235:43948..44491- (Gracilaria caudata M_176_S67 male)
ATGGAGGCGCGTGAAGACAACGTCGAGCCGGCTTTCAGGGATGCGAATGC
TTCCATACGCAACGGAACAGAGCGTTCTGAAGGCATCCATGGGGTGGCGA
TTCGCTCACTGATCTCACGCCTTCAACATGGACAGCAAATGACCGTTATG
AAGGACGATCAATCCGCAACGCTCAACGAGCTAAAACGGTTGGGCGAAGG
GATTGATGTATTGAATAAAGAAAGTGCCGAAGAGTATAATGCTCTGGCAC
CGGAGTTCATTCGTGCTGCTCGACTTGCGGCACAGGTCAAGAGTGACTTG
AACAACATTTCCAGAAGAATGCATTCTGTTCAAACAAAGATCAACGAACT
ACATGCTCTGCAACAGAACGAACATGACGCACGGTAA
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