Gcaud10105.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10105.t1
Unique Name	Gcaud10105.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	268

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_87_length_53860_cov_4.505235	contig	NODE_87_length_53860_cov_4.505235:28614..29417 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703934.1
PFAMs	MoCF_biosynth,PAPS_reduct
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00002
KEGG ko	ko:K00953
KEGG Reaction	R00161
KEGG Pathway	ko00740,ko01100,ko01110,map00740,map01100,map01110
KEGG Module	M00125
Evalue	6.07e-56
EggNOG OGs	COG0175@1\|root,KOG2644@2759\|Eukaryota
EC	2.7.7.2
Description	flavin adenine dinucleotide biosynthetic process
COG category	EH
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10105	Gcaud10105	Gracilaria caudata M_176_S67 male	gene	NODE_87_length_53860_cov_4.505235 28614..29417 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10105.t1.stop1	Gcaud10105.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_87_length_53860_cov_4.505235 28614..28616 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10105.t1.CDS1	Gcaud10105.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_87_length_53860_cov_4.505235 28614..29417 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10105.t1.exon1	Gcaud10105.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_87_length_53860_cov_4.505235 28614..29417 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10105.t1.start1	Gcaud10105.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_87_length_53860_cov_4.505235 29415..29417 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10105.t1	Gcaud10105.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_87_length_53860_cov_4.505235 28614..29417 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_87_length_53860_cov_4.505235:28614..29417-
coding sequence from alignment at NODE_87_length_53860_cov_4.505235:28614..29417-

mRNA sequence

>Gcaud10105.t1 ID=Gcaud10105.t1|Name=Gcaud10105.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=268bp
MGDACGKDEDESYTKNEGNETMSGHGESLPGFVDKDCLSLYLSLKEKATT
CTYIRKALDTIDSAFRLYGPQNVAVAFNGGKDATVVMHLARVALANWCHE
NGTSAALHCLYMCSAQDEEFWEVNSFIREQVSAYKLSAVEVQLGIKEGIH
EFTKDRSNMCAFILGTRRSDPHGATMEHFEPSSKGWPPFMRVNPILTWRY
HEVWEFLRQFRLPYCCLYDRGYTSLGSVATTKPNPALKDNDWERGYRPAW
MLEDESLERAGRVSTAQ*

spliced messenger RNA

>Gcaud10105.t1 ID=Gcaud10105.t1|Name=Gcaud10105.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=804bp|location=Sequence derived from alignment at NODE_87_length_53860_cov_4.505235:28614..29417- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGATGCTTGCGGCAAGGATGAGGACGAAAGCTACACAAAGAACGA
AGGAAATGAGACAATGAGCGGACATGGGGAAAGCCTTCCCGGTTTTGTAG
ACAAGGATTGTCTTTCGCTTTATTTAAGTCTAAAGGAAAAGGCCACCACA
TGTACATACATCCGAAAGGCGCTCGATACAATTGATTCTGCGTTTCGTCT
ATACGGCCCACAGAACGTGGCGGTGGCGTTTAATGGCGGCAAAGACGCCA
CTGTCGTTATGCATCTCGCGAGAGTCGCTCTGGCAAATTGGTGCCACGAG
AACGGAACGTCTGCCGCGCTGCATTGCTTATACATGTGCTCTGCACAAGA
CGAAGAGTTCTGGGAAGTGAATTCATTCATACGGGAACAGGTTTCTGCAT
ACAAGCTTTCGGCAGTTGAGGTGCAACTCGGAATCAAGGAGGGTATTCAT
GAATTCACCAAAGATCGAAGTAATATGTGCGCATTCATTCTCGGCACGAG
GCGTTCTGATCCGCATGGTGCGACCATGGAACACTTTGAGCCAAGCAGCA
AGGGATGGCCGCCTTTCATGAGGGTAAATCCAATCCTCACATGGCGTTAT
CATGAGGTGTGGGAGTTCTTGAGGCAATTTCGTCTGCCTTATTGTTGCTT
GTATGACAGAGGTTACACAAGTCTTGGTTCTGTAGCAACAACAAAACCTA
ATCCAGCTCTGAAGGATAATGATTGGGAAAGGGGATACCGACCTGCTTGG
ATGTTGGAAGATGAATCTTTAGAACGGGCGGGCCGGGTTTCTACAGCGCA
ATGA

protein sequence of Gcaud10105.t1

>Gcaud10105.t1 ID=Gcaud10105.t1|Name=Gcaud10105.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=268bp
MGDACGKDEDESYTKNEGNETMSGHGESLPGFVDKDCLSLYLSLKEKATT
CTYIRKALDTIDSAFRLYGPQNVAVAFNGGKDATVVMHLARVALANWCHE
NGTSAALHCLYMCSAQDEEFWEVNSFIREQVSAYKLSAVEVQLGIKEGIH
EFTKDRSNMCAFILGTRRSDPHGATMEHFEPSSKGWPPFMRVNPILTWRY
HEVWEFLRQFRLPYCCLYDRGYTSLGSVATTKPNPALKDNDWERGYRPAW
MLEDESLERAGRVSTAQ*

mRNA from alignment at NODE_87_length_53860_cov_4.505235:28614..29417-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10105.t1 ID=Gcaud10105.t1|Name=Gcaud10105.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=804bp|location=Sequence derived from alignment at NODE_87_length_53860_cov_4.505235:28614..29417- (Gracilaria caudata M_176_S67 male)
ATGGGCGATGCTTGCGGCAAGGATGAGGACGAAAGCTACACAAAGAACGA
AGGAAATGAGACAATGAGCGGACATGGGGAAAGCCTTCCCGGTTTTGTAG
ACAAGGATTGTCTTTCGCTTTATTTAAGTCTAAAGGAAAAGGCCACCACA
TGTACATACATCCGAAAGGCGCTCGATACAATTGATTCTGCGTTTCGTCT
ATACGGCCCACAGAACGTGGCGGTGGCGTTTAATGGCGGCAAAGACGCCA
CTGTCGTTATGCATCTCGCGAGAGTCGCTCTGGCAAATTGGTGCCACGAG
AACGGAACGTCTGCCGCGCTGCATTGCTTATACATGTGCTCTGCACAAGA
CGAAGAGTTCTGGGAAGTGAATTCATTCATACGGGAACAGGTTTCTGCAT
ACAAGCTTTCGGCAGTTGAGGTGCAACTCGGAATCAAGGAGGGTATTCAT
GAATTCACCAAAGATCGAAGTAATATGTGCGCATTCATTCTCGGCACGAG
GCGTTCTGATCCGCATGGTGCGACCATGGAACACTTTGAGCCAAGCAGCA
AGGGATGGCCGCCTTTCATGAGGGTAAATCCAATCCTCACATGGCGTTAT
CATGAGGTGTGGGAGTTCTTGAGGCAATTTCGTCTGCCTTATTGTTGCTT
GTATGACAGAGGTTACACAAGTCTTGGTTCTGTAGCAACAACAAAACCTA
ATCCAGCTCTGAAGGATAATGATTGGGAAAGGGGATACCGACCTGCTTGG
ATGTTGGAAGATGAATCTTTAGAACGGGCGGGCCGGGTTTCTACAGCGCA
ATGA

Coding sequence (CDS) from alignment at NODE_87_length_53860_cov_4.505235:28614..29417-

>Gcaud10105.t1 ID=Gcaud10105.t1|Name=Gcaud10105.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=804bp|location=Sequence derived from alignment at NODE_87_length_53860_cov_4.505235:28614..29417- (Gracilaria caudata M_176_S67 male)
ATGGGCGATGCTTGCGGCAAGGATGAGGACGAAAGCTACACAAAGAACGA
AGGAAATGAGACAATGAGCGGACATGGGGAAAGCCTTCCCGGTTTTGTAG
ACAAGGATTGTCTTTCGCTTTATTTAAGTCTAAAGGAAAAGGCCACCACA
TGTACATACATCCGAAAGGCGCTCGATACAATTGATTCTGCGTTTCGTCT
ATACGGCCCACAGAACGTGGCGGTGGCGTTTAATGGCGGCAAAGACGCCA
CTGTCGTTATGCATCTCGCGAGAGTCGCTCTGGCAAATTGGTGCCACGAG
AACGGAACGTCTGCCGCGCTGCATTGCTTATACATGTGCTCTGCACAAGA
CGAAGAGTTCTGGGAAGTGAATTCATTCATACGGGAACAGGTTTCTGCAT
ACAAGCTTTCGGCAGTTGAGGTGCAACTCGGAATCAAGGAGGGTATTCAT
GAATTCACCAAAGATCGAAGTAATATGTGCGCATTCATTCTCGGCACGAG
GCGTTCTGATCCGCATGGTGCGACCATGGAACACTTTGAGCCAAGCAGCA
AGGGATGGCCGCCTTTCATGAGGGTAAATCCAATCCTCACATGGCGTTAT
CATGAGGTGTGGGAGTTCTTGAGGCAATTTCGTCTGCCTTATTGTTGCTT
GTATGACAGAGGTTACACAAGTCTTGGTTCTGTAGCAACAACAAAACCTA
ATCCAGCTCTGAAGGATAATGATTGGGAAAGGGGATACCGACCTGCTTGG
ATGTTGGAAGATGAATCTTTAGAACGGGCGGGCCGGGTTTCTACAGCGCA
ATGA