Gcaud10101.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10101.t1
Unique Name	Gcaud10101.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	568

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_87_length_53860_cov_4.505235	contig	NODE_87_length_53860_cov_4.505235:19822..21525 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5786.XP_003283743.1
PFAMs	HGTP_anticodon,ProRS-C_1,tRNA-synt_2b
Max annot lvl	554915\|Amoebozoa
KEGG rclass	RC00055,RC00523
KEGG ko	ko:K01881
KEGG Reaction	R03661
KEGG Pathway	ko00970,map00970
KEGG Module	M00359,M00360
Evalue	1.05e-236
EggNOG OGs	COG0442@1\|root,KOG4163@2759\|Eukaryota,3X83Q@554915\|Amoebozoa
EC	6.1.1.15
Description	Prolyl-tRNA synthetase
COG category	J
BRITE	ko00000,ko00001,ko00002,ko01000,ko01007,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10101	Gcaud10101	Gracilaria caudata M_176_S67 male	gene	NODE_87_length_53860_cov_4.505235 19822..21525 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10101.t1.start1	Gcaud10101.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_87_length_53860_cov_4.505235 19822..19824 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10101.t1.CDS1	Gcaud10101.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_87_length_53860_cov_4.505235 19822..21525 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10101.t1.exon1	Gcaud10101.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_87_length_53860_cov_4.505235 19822..21525 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10101.t1.stop1	Gcaud10101.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_87_length_53860_cov_4.505235 21523..21525 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10101.t1	Gcaud10101.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_87_length_53860_cov_4.505235 19822..21525 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_87_length_53860_cov_4.505235:19822..21525+
coding sequence from alignment at NODE_87_length_53860_cov_4.505235:19822..21525+

mRNA sequence

>Gcaud10101.t1 ID=Gcaud10101.t1|Name=Gcaud10101.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=568bp
MTTAEKAMLGLKVSEKPAERTDLQEQRKAAKEAKRAAKAAKAAEKRKKME
KAPAGVKGSNRDGMEISKSEDFGAWFSQLVTKTEMIEFYDISGCYILRPW
SFAMWDTIHQYFDTEIKKLGVQNAYFPLFVSEKRLTTEEDHIEGFAAEVA
WVTRSGQSELEEPIAVRPTSETIMYPAYAKWIRSHRDLPLKLNQWSNVVR
WEFKYPTPFIRSREFLWQEGHTAFATKEEADTEVLQILDLYRSVYEDLLA
VPVIKGRKSEKEKFAGGLYTTTIEGFIPSNGRAIQAATSHCLGQNFSKMF
KIEFEAGDNKKQYVWQNSWGLTTRSIGVMAMVHGDDKGLVLPPRVAPIQV
VVVPIVRKGMEQMVQEAASALADELKAAGIRVKSDLRDDKNPGWKFNYWE
LKGVPLRLELGPRDIEAGKVVGSRRDDGKKVTFEREGICESVKNALEDIQ
ASIFNRARALRDDKISRVMKWGDFVPTLDERTMVLAPWCEQTACEEDVKE
RSSQESQQRLDKEGEVDKRALSGAAKTLCIPFEEEITRLGIEKLSEDCQC
FACEQNAVSYTMWGRSY*

spliced messenger RNA

>Gcaud10101.t1 ID=Gcaud10101.t1|Name=Gcaud10101.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1704bp|location=Sequence derived from alignment at NODE_87_length_53860_cov_4.505235:19822..21525+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAACCGCAGAGAAAGCCATGTTGGGACTGAAAGTCTCCGAGAAGCC
TGCGGAAAGGACCGACCTTCAGGAGCAGCGAAAGGCGGCGAAGGAAGCAA
AGAGAGCAGCCAAAGCTGCCAAGGCGGCAGAGAAGCGAAAGAAGATGGAA
AAGGCTCCCGCAGGTGTGAAAGGATCTAATCGTGATGGTATGGAGATTTC
CAAATCGGAAGACTTCGGTGCATGGTTCTCGCAACTTGTTACAAAAACCG
AAATGATCGAGTTTTATGATATCTCGGGGTGTTATATTCTTCGTCCATGG
AGTTTTGCAATGTGGGATACCATCCATCAATATTTTGATACTGAGATAAA
AAAACTTGGTGTGCAGAACGCGTACTTCCCGCTGTTTGTGTCCGAGAAAC
GATTGACCACAGAAGAGGATCACATCGAGGGTTTTGCTGCTGAAGTAGCT
TGGGTGACGCGTAGCGGACAGAGTGAATTAGAAGAACCGATTGCTGTTCG
CCCCACTTCAGAAACAATCATGTACCCGGCTTACGCAAAATGGATCAGAA
GTCATCGCGATCTTCCTTTGAAACTCAACCAATGGTCAAACGTTGTGCGT
TGGGAGTTCAAGTATCCTACTCCGTTCATCCGTTCAAGAGAATTCTTGTG
GCAAGAGGGCCACACTGCGTTTGCAACGAAAGAGGAAGCTGATACTGAAG
TGTTACAAATCCTTGACCTCTACCGTTCCGTGTACGAAGATCTGCTAGCC
GTTCCGGTTATCAAGGGAAGGAAATCAGAAAAGGAGAAGTTTGCAGGAGG
TTTGTATACTACCACAATAGAAGGTTTCATCCCGTCGAATGGCCGTGCCA
TCCAGGCTGCAACTAGCCATTGTCTAGGACAAAATTTCTCGAAGATGTTC
AAGATCGAATTCGAGGCAGGGGACAACAAGAAGCAATATGTATGGCAGAA
CTCATGGGGTCTAACTACTCGATCGATTGGCGTTATGGCCATGGTGCATG
GAGATGACAAGGGCCTCGTCCTCCCGCCGCGTGTAGCTCCGATACAGGTT
GTTGTTGTGCCTATTGTTCGCAAGGGAATGGAACAAATGGTACAGGAAGC
CGCGAGTGCACTTGCAGATGAGCTCAAGGCAGCTGGTATTCGGGTCAAGT
CCGATCTTAGAGACGATAAAAATCCGGGATGGAAGTTCAACTACTGGGAA
TTGAAGGGAGTGCCGCTGCGCCTTGAACTCGGCCCGCGTGACATTGAAGC
AGGGAAGGTGGTTGGGAGCAGACGTGATGATGGTAAGAAGGTGACATTTG
AAAGAGAAGGGATCTGCGAGAGTGTTAAGAATGCGTTAGAAGATATTCAG
GCTTCTATATTCAACAGAGCGCGCGCCCTTCGAGACGATAAGATTTCTAG
GGTTATGAAATGGGGAGACTTTGTTCCTACACTTGACGAACGAACTATGG
TACTTGCCCCATGGTGTGAACAAACTGCATGTGAAGAAGACGTGAAGGAG
AGAAGTAGTCAAGAAAGTCAACAGAGGTTAGATAAAGAGGGGGAAGTTGA
TAAGCGGGCCCTCTCTGGTGCCGCAAAAACATTGTGCATTCCATTCGAGG
AGGAGATAACGAGGCTGGGCATCGAAAAGCTCTCAGAAGACTGTCAATGT
TTTGCATGCGAACAAAACGCAGTTTCATATACAATGTGGGGCCGCAGCTA
CTAA

protein sequence of Gcaud10101.t1

>Gcaud10101.t1 ID=Gcaud10101.t1|Name=Gcaud10101.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=568bp
MTTAEKAMLGLKVSEKPAERTDLQEQRKAAKEAKRAAKAAKAAEKRKKME
KAPAGVKGSNRDGMEISKSEDFGAWFSQLVTKTEMIEFYDISGCYILRPW
SFAMWDTIHQYFDTEIKKLGVQNAYFPLFVSEKRLTTEEDHIEGFAAEVA
WVTRSGQSELEEPIAVRPTSETIMYPAYAKWIRSHRDLPLKLNQWSNVVR
WEFKYPTPFIRSREFLWQEGHTAFATKEEADTEVLQILDLYRSVYEDLLA
VPVIKGRKSEKEKFAGGLYTTTIEGFIPSNGRAIQAATSHCLGQNFSKMF
KIEFEAGDNKKQYVWQNSWGLTTRSIGVMAMVHGDDKGLVLPPRVAPIQV
VVVPIVRKGMEQMVQEAASALADELKAAGIRVKSDLRDDKNPGWKFNYWE
LKGVPLRLELGPRDIEAGKVVGSRRDDGKKVTFEREGICESVKNALEDIQ
ASIFNRARALRDDKISRVMKWGDFVPTLDERTMVLAPWCEQTACEEDVKE
RSSQESQQRLDKEGEVDKRALSGAAKTLCIPFEEEITRLGIEKLSEDCQC
FACEQNAVSYTMWGRSY*

mRNA from alignment at NODE_87_length_53860_cov_4.505235:19822..21525+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10101.t1 ID=Gcaud10101.t1|Name=Gcaud10101.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1704bp|location=Sequence derived from alignment at NODE_87_length_53860_cov_4.505235:19822..21525+ (Gracilaria caudata M_176_S67 male)
ATGACAACCGCAGAGAAAGCCATGTTGGGACTGAAAGTCTCCGAGAAGCC
TGCGGAAAGGACCGACCTTCAGGAGCAGCGAAAGGCGGCGAAGGAAGCAA
AGAGAGCAGCCAAAGCTGCCAAGGCGGCAGAGAAGCGAAAGAAGATGGAA
AAGGCTCCCGCAGGTGTGAAAGGATCTAATCGTGATGGTATGGAGATTTC
CAAATCGGAAGACTTCGGTGCATGGTTCTCGCAACTTGTTACAAAAACCG
AAATGATCGAGTTTTATGATATCTCGGGGTGTTATATTCTTCGTCCATGG
AGTTTTGCAATGTGGGATACCATCCATCAATATTTTGATACTGAGATAAA
AAAACTTGGTGTGCAGAACGCGTACTTCCCGCTGTTTGTGTCCGAGAAAC
GATTGACCACAGAAGAGGATCACATCGAGGGTTTTGCTGCTGAAGTAGCT
TGGGTGACGCGTAGCGGACAGAGTGAATTAGAAGAACCGATTGCTGTTCG
CCCCACTTCAGAAACAATCATGTACCCGGCTTACGCAAAATGGATCAGAA
GTCATCGCGATCTTCCTTTGAAACTCAACCAATGGTCAAACGTTGTGCGT
TGGGAGTTCAAGTATCCTACTCCGTTCATCCGTTCAAGAGAATTCTTGTG
GCAAGAGGGCCACACTGCGTTTGCAACGAAAGAGGAAGCTGATACTGAAG
TGTTACAAATCCTTGACCTCTACCGTTCCGTGTACGAAGATCTGCTAGCC
GTTCCGGTTATCAAGGGAAGGAAATCAGAAAAGGAGAAGTTTGCAGGAGG
TTTGTATACTACCACAATAGAAGGTTTCATCCCGTCGAATGGCCGTGCCA
TCCAGGCTGCAACTAGCCATTGTCTAGGACAAAATTTCTCGAAGATGTTC
AAGATCGAATTCGAGGCAGGGGACAACAAGAAGCAATATGTATGGCAGAA
CTCATGGGGTCTAACTACTCGATCGATTGGCGTTATGGCCATGGTGCATG
GAGATGACAAGGGCCTCGTCCTCCCGCCGCGTGTAGCTCCGATACAGGTT
GTTGTTGTGCCTATTGTTCGCAAGGGAATGGAACAAATGGTACAGGAAGC
CGCGAGTGCACTTGCAGATGAGCTCAAGGCAGCTGGTATTCGGGTCAAGT
CCGATCTTAGAGACGATAAAAATCCGGGATGGAAGTTCAACTACTGGGAA
TTGAAGGGAGTGCCGCTGCGCCTTGAACTCGGCCCGCGTGACATTGAAGC
AGGGAAGGTGGTTGGGAGCAGACGTGATGATGGTAAGAAGGTGACATTTG
AAAGAGAAGGGATCTGCGAGAGTGTTAAGAATGCGTTAGAAGATATTCAG
GCTTCTATATTCAACAGAGCGCGCGCCCTTCGAGACGATAAGATTTCTAG
GGTTATGAAATGGGGAGACTTTGTTCCTACACTTGACGAACGAACTATGG
TACTTGCCCCATGGTGTGAACAAACTGCATGTGAAGAAGACGTGAAGGAG
AGAAGTAGTCAAGAAAGTCAACAGAGGTTAGATAAAGAGGGGGAAGTTGA
TAAGCGGGCCCTCTCTGGTGCCGCAAAAACATTGTGCATTCCATTCGAGG
AGGAGATAACGAGGCTGGGCATCGAAAAGCTCTCAGAAGACTGTCAATGT
TTTGCATGCGAACAAAACGCAGTTTCATATACAATGTGGGGCCGCAGCTA
CTAA

Coding sequence (CDS) from alignment at NODE_87_length_53860_cov_4.505235:19822..21525+

>Gcaud10101.t1 ID=Gcaud10101.t1|Name=Gcaud10101.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1704bp|location=Sequence derived from alignment at NODE_87_length_53860_cov_4.505235:19822..21525+ (Gracilaria caudata M_176_S67 male)
ATGACAACCGCAGAGAAAGCCATGTTGGGACTGAAAGTCTCCGAGAAGCC
TGCGGAAAGGACCGACCTTCAGGAGCAGCGAAAGGCGGCGAAGGAAGCAA
AGAGAGCAGCCAAAGCTGCCAAGGCGGCAGAGAAGCGAAAGAAGATGGAA
AAGGCTCCCGCAGGTGTGAAAGGATCTAATCGTGATGGTATGGAGATTTC
CAAATCGGAAGACTTCGGTGCATGGTTCTCGCAACTTGTTACAAAAACCG
AAATGATCGAGTTTTATGATATCTCGGGGTGTTATATTCTTCGTCCATGG
AGTTTTGCAATGTGGGATACCATCCATCAATATTTTGATACTGAGATAAA
AAAACTTGGTGTGCAGAACGCGTACTTCCCGCTGTTTGTGTCCGAGAAAC
GATTGACCACAGAAGAGGATCACATCGAGGGTTTTGCTGCTGAAGTAGCT
TGGGTGACGCGTAGCGGACAGAGTGAATTAGAAGAACCGATTGCTGTTCG
CCCCACTTCAGAAACAATCATGTACCCGGCTTACGCAAAATGGATCAGAA
GTCATCGCGATCTTCCTTTGAAACTCAACCAATGGTCAAACGTTGTGCGT
TGGGAGTTCAAGTATCCTACTCCGTTCATCCGTTCAAGAGAATTCTTGTG
GCAAGAGGGCCACACTGCGTTTGCAACGAAAGAGGAAGCTGATACTGAAG
TGTTACAAATCCTTGACCTCTACCGTTCCGTGTACGAAGATCTGCTAGCC
GTTCCGGTTATCAAGGGAAGGAAATCAGAAAAGGAGAAGTTTGCAGGAGG
TTTGTATACTACCACAATAGAAGGTTTCATCCCGTCGAATGGCCGTGCCA
TCCAGGCTGCAACTAGCCATTGTCTAGGACAAAATTTCTCGAAGATGTTC
AAGATCGAATTCGAGGCAGGGGACAACAAGAAGCAATATGTATGGCAGAA
CTCATGGGGTCTAACTACTCGATCGATTGGCGTTATGGCCATGGTGCATG
GAGATGACAAGGGCCTCGTCCTCCCGCCGCGTGTAGCTCCGATACAGGTT
GTTGTTGTGCCTATTGTTCGCAAGGGAATGGAACAAATGGTACAGGAAGC
CGCGAGTGCACTTGCAGATGAGCTCAAGGCAGCTGGTATTCGGGTCAAGT
CCGATCTTAGAGACGATAAAAATCCGGGATGGAAGTTCAACTACTGGGAA
TTGAAGGGAGTGCCGCTGCGCCTTGAACTCGGCCCGCGTGACATTGAAGC
AGGGAAGGTGGTTGGGAGCAGACGTGATGATGGTAAGAAGGTGACATTTG
AAAGAGAAGGGATCTGCGAGAGTGTTAAGAATGCGTTAGAAGATATTCAG
GCTTCTATATTCAACAGAGCGCGCGCCCTTCGAGACGATAAGATTTCTAG
GGTTATGAAATGGGGAGACTTTGTTCCTACACTTGACGAACGAACTATGG
TACTTGCCCCATGGTGTGAACAAACTGCATGTGAAGAAGACGTGAAGGAG
AGAAGTAGTCAAGAAAGTCAACAGAGGTTAGATAAAGAGGGGGAAGTTGA
TAAGCGGGCCCTCTCTGGTGCCGCAAAAACATTGTGCATTCCATTCGAGG
AGGAGATAACGAGGCTGGGCATCGAAAAGCTCTCAGAAGACTGTCAATGT
TTTGCATGCGAACAAAACGCAGTTTCATATACAATGTGGGGCCGCAGCTA
CTAA