Gcaud10090.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10090.t1
Unique NameGcaud10090.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length258
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1573_length_9687_cov_4.473635contigNODE_1573_length_9687_cov_4.473635:7588..8552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7668.SPU_020601-tr
Preferred nameSPC25
PFAMsSpindle_Spc25
Max annot lvl33208|Metazoa
KEGG koko:K11550
GOsGO:0000226,GO:0000278,GO:0000775,GO:0000776,GO:0000777,GO:0000779,GO:0000793,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005829,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0008150,GO:0009987,GO:0016043,GO:0022402,GO:0031262,GO:0032991,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0071840,GO:0098687,GO:1902850,GO:1903047
Evalue8.31e-10
EggNOG OGsKOG4657@1|root,KOG4657@2759|Eukaryota,39X38@33154|Opisthokonta,3BAUZ@33208|Metazoa,3CYRR@33213|Bilateria
Descriptionmitotic spindle organization
COG categoryS
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10090Gcaud10090Gracilaria caudata M_176_S67 malegeneNODE_1573_length_9687_cov_4.473635 7588..8552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10090.t1Gcaud10090.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1573_length_9687_cov_4.473635 7588..8552 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10090.t1.start1Gcaud10090.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1573_length_9687_cov_4.473635 7588..7590 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10090.t1.CDS1Gcaud10090.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1573_length_9687_cov_4.473635 7588..7828 +
Gcaud10090.t1.CDS2Gcaud10090.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_1573_length_9687_cov_4.473635 7934..8347 +
Gcaud10090.t1.CDS3Gcaud10090.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_1573_length_9687_cov_4.473635 8434..8552 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10090.t1.exon1Gcaud10090.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1573_length_9687_cov_4.473635 7588..7828 +
Gcaud10090.t1.exon2Gcaud10090.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_1573_length_9687_cov_4.473635 7934..8347 +
Gcaud10090.t1.exon3Gcaud10090.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_1573_length_9687_cov_4.473635 8434..8552 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10090.t1.intron1Gcaud10090.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_1573_length_9687_cov_4.473635 7829..7933 +
Gcaud10090.t1.intron2Gcaud10090.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_1573_length_9687_cov_4.473635 8348..8433 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10090.t1.stop1Gcaud10090.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1573_length_9687_cov_4.473635 8550..8552 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10090.t1 ID=Gcaud10090.t1|Name=Gcaud10090.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=258bp
MSSASSILETDVRIDNSTAARINENLEKIKQLMDLMDQRTEESTKATGES
VRILEHLAEKVIQQDKKRDDIYLTAMSDRKENMEKEQAMCKFANDALEAR
QGQFRQLHLQKNELEETVTSLREKLDGLPFERKRYESKLMEENRRLRDGR
RVLERRLKEVNEILQRNEKSTRKFEAFLGVNVRAVDDKCLEFTFTKVKSS
EPDKEFKVTVLSHDGRFTATECDPEIDNFRKLKDKLAEDGQLIDFLHKVR
KSFKFHE*
back to top

spliced messenger RNA

>Gcaud10090.t1 ID=Gcaud10090.t1|Name=Gcaud10090.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=774bp|location=Sequence derived from alignment at NODE_1573_length_9687_cov_4.473635:7588..8552+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAAGCGCCTCAAGTATTCTCGAAACAGATGTGAGAATAGATAATTC
CACTGCTGCGCGTATAAATGAAAATCTTGAGAAGATAAAACAGCTCATGG
ATCTCATGGACCAACGCACAGAGGAAAGCACCAAAGCCACCGGAGAAAGC
GTACGCATTCTAGAACACCTGGCAGAAAAAGTCATTCAACAGGACAAGAA
ACGTGATGACATCTACTTAACTGCCATGAGCGACCGTAAAGAGAACATGG
AAAAGGAGCAGGCGATGTGCAAGTTTGCGAATGATGCGCTGGAAGCAAGA
CAGGGACAATTCAGACAGTTGCACCTGCAGAAAAATGAACTGGAAGAGAC
TGTCACAAGCCTTCGTGAAAAGCTTGATGGTCTACCATTTGAACGAAAGC
GCTACGAGAGCAAACTAATGGAAGAAAATCGTCGACTGAGAGACGGCAGG
CGTGTACTGGAACGACGCCTCAAAGAAGTGAATGAAATTCTTCAACGAAA
CGAGAAATCTACGCGCAAGTTTGAGGCGTTTCTCGGTGTCAACGTTCGTG
CTGTAGACGATAAATGCCTTGAGTTCACGTTCACTAAGGTTAAGAGCAGT
GAACCGGATAAGGAGTTCAAGGTCACGGTTCTCAGTCATGACGGACGATT
TACTGCGACGGAGTGCGACCCTGAAATTGACAACTTCAGAAAGTTGAAGG
ACAAGTTGGCGGAGGATGGCCAGCTCATAGACTTCTTGCACAAGGTTCGA
AAATCGTTCAAGTTTCATGAGTAG
back to top

protein sequence of Gcaud10090.t1

>Gcaud10090.t1 ID=Gcaud10090.t1|Name=Gcaud10090.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=258bp
MSSASSILETDVRIDNSTAARINENLEKIKQLMDLMDQRTEESTKATGES
VRILEHLAEKVIQQDKKRDDIYLTAMSDRKENMEKEQAMCKFANDALEAR
QGQFRQLHLQKNELEETVTSLREKLDGLPFERKRYESKLMEENRRLRDGR
RVLERRLKEVNEILQRNEKSTRKFEAFLGVNVRAVDDKCLEFTFTKVKSS
EPDKEFKVTVLSHDGRFTATECDPEIDNFRKLKDKLAEDGQLIDFLHKVR
KSFKFHE*
back to top

mRNA from alignment at NODE_1573_length_9687_cov_4.473635:7588..8552+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10090.t1 ID=Gcaud10090.t1|Name=Gcaud10090.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=965bp|location=Sequence derived from alignment at NODE_1573_length_9687_cov_4.473635:7588..8552+ (Gracilaria caudata M_176_S67 male)
ATGTCAAGCGCCTCAAGTATTCTCGAAACAGATGTGAGAATAGATAATTC
CACTGCTGCGCGTATAAATGAAAATCTTGAGAAGATAAAACAGCTCATGG
ATCTCATGGACCAACGCACAGAGGAAAGCACCAAAGCCACCGGAGAAAGC
GTACGCATTCTAGAACACCTGGCAGAAAAAGTCATTCAACAGGACAAGAA
ACGTGATGACATCTACTTAACTGCCATGAGCGACCGTAAAGGTAAGCCTT
ATCACATCGACAATTTTGAGCTCAATGTCAAACTTGCTTCGGCATTGGGA
TCAAGCTAACGCAACTTCTTCGTGTTCCTTTCACTCCCCGATGCAGAGAA
CATGGAAAAGGAGCAGGCGATGTGCAAGTTTGCGAATGATGCGCTGGAAG
CAAGACAGGGACAATTCAGACAGTTGCACCTGCAGAAAAATGAACTGGAA
GAGACTGTCACAAGCCTTCGTGAAAAGCTTGATGGTCTACCATTTGAACG
AAAGCGCTACGAGAGCAAACTAATGGAAGAAAATCGTCGACTGAGAGACG
GCAGGCGTGTACTGGAACGACGCCTCAAAGAAGTGAATGAAATTCTTCAA
CGAAACGAGAAATCTACGCGCAAGTTTGAGGCGTTTCTCGGTGTCAACGT
TCGTGCTGTAGACGATAAATGCCTTGAGTTCACGTTCACTAAGGTTAAGA
GCAGTGAACCGGATAAGGAGTTCAAGGTCACGGTTCTCAGTCATGACGGA
CGATTTACTGGTAAGTGGCGTGGCCAATGCTCATGCGGAAACAGATCGCA
AATGCGGAATCCTAACCACTGTTTTCCTTGTTGCTTCCTACGACAGCGAC
GGAGTGCGACCCTGAAATTGACAACTTCAGAAAGTTGAAGGACAAGTTGG
CGGAGGATGGCCAGCTCATAGACTTCTTGCACAAGGTTCGAAAATCGTTC
AAGTTTCATGAGTAG
back to top

Coding sequence (CDS) from alignment at NODE_1573_length_9687_cov_4.473635:7588..8552+

>Gcaud10090.t1 ID=Gcaud10090.t1|Name=Gcaud10090.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=774bp|location=Sequence derived from alignment at NODE_1573_length_9687_cov_4.473635:7588..8552+ (Gracilaria caudata M_176_S67 male)
ATGTCAAGCGCCTCAAGTATTCTCGAAACAGATGTGAGAATAGATAATTC
CACTGCTGCGCGTATAAATGAAAATCTTGAGAAGATAAAACAGCTCATGG
ATCTCATGGACCAACGCACAGAGGAAAGCACCAAAGCCACCGGAGAAAGC
GTACGCATTCTAGAACACCTGGCAGAAAAAGTCATTCAACAGGACAAGAA
ACGTGATGACATCTACTTAACTGCCATGAGCGACCGTAAAGAGAACATGG
AAAAGGAGCAGGCGATGTGCAAGTTTGCGAATGATGCGCTGGAAGCAAGA
CAGGGACAATTCAGACAGTTGCACCTGCAGAAAAATGAACTGGAAGAGAC
TGTCACAAGCCTTCGTGAAAAGCTTGATGGTCTACCATTTGAACGAAAGC
GCTACGAGAGCAAACTAATGGAAGAAAATCGTCGACTGAGAGACGGCAGG
CGTGTACTGGAACGACGCCTCAAAGAAGTGAATGAAATTCTTCAACGAAA
CGAGAAATCTACGCGCAAGTTTGAGGCGTTTCTCGGTGTCAACGTTCGTG
CTGTAGACGATAAATGCCTTGAGTTCACGTTCACTAAGGTTAAGAGCAGT
GAACCGGATAAGGAGTTCAAGGTCACGGTTCTCAGTCATGACGGACGATT
TACTGCGACGGAGTGCGACCCTGAAATTGACAACTTCAGAAAGTTGAAGG
ACAAGTTGGCGGAGGATGGCCAGCTCATAGACTTCTTGCACAAGGTTCGA
AAATCGTTCAAGTTTCATGAGTAG
back to top