Gcaud10088.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10088.t1
Unique Name	Gcaud10088.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	746

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_1573_length_9687_cov_4.473635	contig	NODE_1573_length_9687_cov_4.473635:2414..4651 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703235.1
Preferred name	AMPD2
PFAMs	A_deaminase
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00477
KEGG ko	ko:K01490
KEGG Reaction	R00181
KEGG Pathway	ko00230,ko01100,ko01110,ko01130,map00230,map01100,map01110,map01130
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Evalue	2.12e-262
EggNOG OGs	COG1816@1\|root,KOG1096@2759\|Eukaryota
EC	3.5.4.6
Description	adenosine-phosphate deaminase activity
COG category	F
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10088	Gcaud10088	Gracilaria caudata M_176_S67 male	gene	NODE_1573_length_9687_cov_4.473635 2414..4651 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10088.t1.start1	Gcaud10088.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_1573_length_9687_cov_4.473635 2414..2416 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10088.t1.CDS1	Gcaud10088.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_1573_length_9687_cov_4.473635 2414..4651 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10088.t1.exon1	Gcaud10088.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_1573_length_9687_cov_4.473635 2414..4651 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10088.t1.stop1	Gcaud10088.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_1573_length_9687_cov_4.473635 4649..4651 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10088.t1	Gcaud10088.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_1573_length_9687_cov_4.473635 2414..4651 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_1573_length_9687_cov_4.473635:2414..4651+
coding sequence from alignment at NODE_1573_length_9687_cov_4.473635:2414..4651+

mRNA sequence

>Gcaud10088.t1 ID=Gcaud10088.t1|Name=Gcaud10088.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=746bp
MRSPQSSSPPSTMHAPSIDATVDEDTLATATLDHRRSSMRSAAANFKSLA
PQSPTDYRRLTIAPALRSQQEVVGASNLRRAISLRQRWLYRRNVPEWYNY
AQSKPRSYADAASPLVPPPYDPFCMPSSPPTHHVFRWKNGVVSVYADQQA
VTNNCTQIKGTTLSDFAKDLVSLSAIMNDPDTRSFCHRRLVLLHERFNMH
ILLNENQERLNQIAVPHRDFYNVSKVDVHVHHSSMSNQKHFLTFIKRKVK
QDGDQKVLANREDPNGEPLTLTQVFKSLKLQPHELSVDTLDVHADNTIFH
RFDRFNLKYNPFGQSRLREIFMKTDNYIKGKYLAELTHEVFSDLRFTKYQ
NSEYRISIYGRDINEWDNLGAWFLDHEIFSPNVRWLIQIPRLYSIYKQKG
RLRSFQDMLDNIFNPIFEATVNPSSHPKVACLLQQIVGFDSVDDESQPQP
RVDLRRCGPPEKWKSEENPPYSYYSFFIYSNLAVLNQLRESKGMNTFTYR
PHAGEAGDIEHLATSFLLAHGINHGLNLKKSPVLQYLFYVTQIGVAMSPL
SNNALFCEITKNPLPTFFKRGLNVTLSTDDPLQFAFTREPLMEEYSVAAQ
VWKLSNTDLCELARNSVLQSGFEPCVKASWLGATWYLSGQAGNDISKTNV
PSIRLCYRYETLLEEIKLIYDGEVPDEIHVLPTFSYTKRGNEPVQIPGNE
ESKQQVPSAAGTVDPFGNGEFLEGDDFHNCGLSEDEEVLIAEDEM*

spliced messenger RNA

>Gcaud10088.t1 ID=Gcaud10088.t1|Name=Gcaud10088.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2238bp|location=Sequence derived from alignment at NODE_1573_length_9687_cov_4.473635:2414..4651+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTTCGCCACAATCAAGTTCGCCGCCGTCCACAATGCATGCGCCGTC
AATCGACGCCACTGTCGATGAGGATACACTTGCCACTGCCACCTTGGACC
ATCGTCGCTCCTCCATGCGTTCGGCCGCCGCAAACTTCAAGAGCTTGGCG
CCACAGTCGCCCACAGATTACCGTCGCTTGACCATTGCGCCGGCCTTACG
CTCGCAACAGGAAGTCGTTGGAGCCAGCAACCTGCGCCGAGCTATCTCGC
TTCGACAGCGCTGGTTGTACCGACGAAACGTACCTGAATGGTATAACTAT
GCACAGTCTAAACCGCGCTCTTACGCTGACGCTGCTTCCCCACTTGTTCC
ACCTCCATATGACCCGTTTTGCATGCCCTCTTCGCCGCCTACCCACCATG
TTTTTCGCTGGAAAAACGGCGTTGTCAGTGTATATGCTGATCAGCAAGCG
GTCACTAACAACTGCACACAGATTAAGGGCACCACGCTCTCTGACTTTGC
AAAAGATCTCGTTTCGTTGTCCGCTATTATGAATGACCCAGACACAAGGT
CCTTCTGTCACCGCAGATTGGTTTTGCTGCATGAACGCTTCAATATGCAC
ATATTGCTCAATGAAAACCAGGAACGATTGAATCAAATCGCCGTTCCACA
TCGTGATTTTTACAACGTCAGCAAGGTCGACGTGCACGTTCATCATTCTT
CAATGTCCAATCAGAAGCACTTTCTCACCTTCATCAAGCGAAAAGTGAAG
CAAGATGGCGATCAGAAAGTGCTTGCCAATCGAGAAGATCCCAATGGCGA
ACCGCTAACTCTTACCCAAGTGTTCAAATCCCTCAAACTTCAACCGCACG
AATTGAGTGTTGATACGCTTGATGTACATGCCGATAATACCATCTTCCAT
AGATTCGATCGTTTCAACCTAAAGTACAATCCATTTGGTCAGTCTAGACT
GCGAGAGATTTTTATGAAGACTGATAATTACATCAAGGGAAAGTACCTGG
CAGAACTCACTCACGAGGTGTTTTCCGATCTGCGATTTACGAAATACCAA
AACAGCGAGTACCGTATAAGCATCTACGGCAGAGATATCAACGAATGGGA
TAACCTTGGGGCATGGTTTCTTGATCATGAGATATTCAGTCCCAATGTGC
GTTGGCTCATTCAAATTCCACGTCTCTACAGTATCTACAAGCAGAAGGGA
CGACTCAGATCGTTTCAAGACATGTTGGACAACATCTTTAACCCTATTTT
TGAAGCCACTGTGAACCCCTCGTCCCACCCGAAAGTCGCATGTCTTTTGC
AGCAGATTGTGGGATTCGATTCTGTCGATGATGAGAGTCAGCCACAACCT
CGAGTGGATTTGAGAAGGTGTGGGCCTCCTGAAAAATGGAAAAGCGAGGA
AAATCCACCATATAGTTACTATTCGTTCTTCATATATAGCAACCTGGCTG
TCCTGAACCAACTGCGAGAGTCTAAAGGTATGAACACGTTCACGTATCGA
CCACATGCCGGTGAGGCCGGCGACATTGAGCACCTTGCGACGTCATTTCT
TCTGGCGCATGGAATCAATCATGGCTTGAACCTCAAAAAGAGCCCAGTGT
TGCAGTATCTGTTCTACGTCACCCAAATCGGAGTTGCAATGAGCCCGCTC
AGTAATAACGCCCTGTTCTGCGAGATTACCAAGAACCCGTTGCCGACCTT
CTTCAAACGGGGCTTGAATGTAACCTTGTCAACTGATGATCCGCTTCAGT
TTGCTTTCACTCGAGAACCGCTCATGGAGGAGTACTCAGTTGCTGCCCAG
GTATGGAAGCTTTCAAACACGGATCTGTGTGAGCTCGCGCGAAACTCTGT
ACTGCAATCTGGATTTGAACCGTGCGTGAAGGCCAGCTGGTTAGGGGCGA
CGTGGTATTTGAGCGGACAAGCGGGAAATGATATTTCAAAGACAAATGTC
CCGTCAATACGACTTTGCTATCGGTACGAGACTCTTTTGGAAGAAATCAA
GTTAATATATGACGGGGAAGTGCCGGACGAAATTCATGTCTTGCCGACTT
TCTCGTACACAAAAAGAGGGAACGAACCTGTTCAAATACCTGGGAACGAA
GAAAGTAAGCAGCAAGTTCCCTCTGCGGCAGGAACCGTAGACCCCTTTGG
CAATGGAGAATTCCTTGAAGGGGACGACTTTCACAACTGTGGGTTGTCAG
AGGATGAAGAAGTTCTCATTGCGGAAGATGAGATGTAA

protein sequence of Gcaud10088.t1

>Gcaud10088.t1 ID=Gcaud10088.t1|Name=Gcaud10088.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=746bp
MRSPQSSSPPSTMHAPSIDATVDEDTLATATLDHRRSSMRSAAANFKSLA
PQSPTDYRRLTIAPALRSQQEVVGASNLRRAISLRQRWLYRRNVPEWYNY
AQSKPRSYADAASPLVPPPYDPFCMPSSPPTHHVFRWKNGVVSVYADQQA
VTNNCTQIKGTTLSDFAKDLVSLSAIMNDPDTRSFCHRRLVLLHERFNMH
ILLNENQERLNQIAVPHRDFYNVSKVDVHVHHSSMSNQKHFLTFIKRKVK
QDGDQKVLANREDPNGEPLTLTQVFKSLKLQPHELSVDTLDVHADNTIFH
RFDRFNLKYNPFGQSRLREIFMKTDNYIKGKYLAELTHEVFSDLRFTKYQ
NSEYRISIYGRDINEWDNLGAWFLDHEIFSPNVRWLIQIPRLYSIYKQKG
RLRSFQDMLDNIFNPIFEATVNPSSHPKVACLLQQIVGFDSVDDESQPQP
RVDLRRCGPPEKWKSEENPPYSYYSFFIYSNLAVLNQLRESKGMNTFTYR
PHAGEAGDIEHLATSFLLAHGINHGLNLKKSPVLQYLFYVTQIGVAMSPL
SNNALFCEITKNPLPTFFKRGLNVTLSTDDPLQFAFTREPLMEEYSVAAQ
VWKLSNTDLCELARNSVLQSGFEPCVKASWLGATWYLSGQAGNDISKTNV
PSIRLCYRYETLLEEIKLIYDGEVPDEIHVLPTFSYTKRGNEPVQIPGNE
ESKQQVPSAAGTVDPFGNGEFLEGDDFHNCGLSEDEEVLIAEDEM*

mRNA from alignment at NODE_1573_length_9687_cov_4.473635:2414..4651+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10088.t1 ID=Gcaud10088.t1|Name=Gcaud10088.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2238bp|location=Sequence derived from alignment at NODE_1573_length_9687_cov_4.473635:2414..4651+ (Gracilaria caudata M_176_S67 male)
ATGCGTTCGCCACAATCAAGTTCGCCGCCGTCCACAATGCATGCGCCGTC
AATCGACGCCACTGTCGATGAGGATACACTTGCCACTGCCACCTTGGACC
ATCGTCGCTCCTCCATGCGTTCGGCCGCCGCAAACTTCAAGAGCTTGGCG
CCACAGTCGCCCACAGATTACCGTCGCTTGACCATTGCGCCGGCCTTACG
CTCGCAACAGGAAGTCGTTGGAGCCAGCAACCTGCGCCGAGCTATCTCGC
TTCGACAGCGCTGGTTGTACCGACGAAACGTACCTGAATGGTATAACTAT
GCACAGTCTAAACCGCGCTCTTACGCTGACGCTGCTTCCCCACTTGTTCC
ACCTCCATATGACCCGTTTTGCATGCCCTCTTCGCCGCCTACCCACCATG
TTTTTCGCTGGAAAAACGGCGTTGTCAGTGTATATGCTGATCAGCAAGCG
GTCACTAACAACTGCACACAGATTAAGGGCACCACGCTCTCTGACTTTGC
AAAAGATCTCGTTTCGTTGTCCGCTATTATGAATGACCCAGACACAAGGT
CCTTCTGTCACCGCAGATTGGTTTTGCTGCATGAACGCTTCAATATGCAC
ATATTGCTCAATGAAAACCAGGAACGATTGAATCAAATCGCCGTTCCACA
TCGTGATTTTTACAACGTCAGCAAGGTCGACGTGCACGTTCATCATTCTT
CAATGTCCAATCAGAAGCACTTTCTCACCTTCATCAAGCGAAAAGTGAAG
CAAGATGGCGATCAGAAAGTGCTTGCCAATCGAGAAGATCCCAATGGCGA
ACCGCTAACTCTTACCCAAGTGTTCAAATCCCTCAAACTTCAACCGCACG
AATTGAGTGTTGATACGCTTGATGTACATGCCGATAATACCATCTTCCAT
AGATTCGATCGTTTCAACCTAAAGTACAATCCATTTGGTCAGTCTAGACT
GCGAGAGATTTTTATGAAGACTGATAATTACATCAAGGGAAAGTACCTGG
CAGAACTCACTCACGAGGTGTTTTCCGATCTGCGATTTACGAAATACCAA
AACAGCGAGTACCGTATAAGCATCTACGGCAGAGATATCAACGAATGGGA
TAACCTTGGGGCATGGTTTCTTGATCATGAGATATTCAGTCCCAATGTGC
GTTGGCTCATTCAAATTCCACGTCTCTACAGTATCTACAAGCAGAAGGGA
CGACTCAGATCGTTTCAAGACATGTTGGACAACATCTTTAACCCTATTTT
TGAAGCCACTGTGAACCCCTCGTCCCACCCGAAAGTCGCATGTCTTTTGC
AGCAGATTGTGGGATTCGATTCTGTCGATGATGAGAGTCAGCCACAACCT
CGAGTGGATTTGAGAAGGTGTGGGCCTCCTGAAAAATGGAAAAGCGAGGA
AAATCCACCATATAGTTACTATTCGTTCTTCATATATAGCAACCTGGCTG
TCCTGAACCAACTGCGAGAGTCTAAAGGTATGAACACGTTCACGTATCGA
CCACATGCCGGTGAGGCCGGCGACATTGAGCACCTTGCGACGTCATTTCT
TCTGGCGCATGGAATCAATCATGGCTTGAACCTCAAAAAGAGCCCAGTGT
TGCAGTATCTGTTCTACGTCACCCAAATCGGAGTTGCAATGAGCCCGCTC
AGTAATAACGCCCTGTTCTGCGAGATTACCAAGAACCCGTTGCCGACCTT
CTTCAAACGGGGCTTGAATGTAACCTTGTCAACTGATGATCCGCTTCAGT
TTGCTTTCACTCGAGAACCGCTCATGGAGGAGTACTCAGTTGCTGCCCAG
GTATGGAAGCTTTCAAACACGGATCTGTGTGAGCTCGCGCGAAACTCTGT
ACTGCAATCTGGATTTGAACCGTGCGTGAAGGCCAGCTGGTTAGGGGCGA
CGTGGTATTTGAGCGGACAAGCGGGAAATGATATTTCAAAGACAAATGTC
CCGTCAATACGACTTTGCTATCGGTACGAGACTCTTTTGGAAGAAATCAA
GTTAATATATGACGGGGAAGTGCCGGACGAAATTCATGTCTTGCCGACTT
TCTCGTACACAAAAAGAGGGAACGAACCTGTTCAAATACCTGGGAACGAA
GAAAGTAAGCAGCAAGTTCCCTCTGCGGCAGGAACCGTAGACCCCTTTGG
CAATGGAGAATTCCTTGAAGGGGACGACTTTCACAACTGTGGGTTGTCAG
AGGATGAAGAAGTTCTCATTGCGGAAGATGAGATGTAA

Coding sequence (CDS) from alignment at NODE_1573_length_9687_cov_4.473635:2414..4651+

>Gcaud10088.t1 ID=Gcaud10088.t1|Name=Gcaud10088.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2238bp|location=Sequence derived from alignment at NODE_1573_length_9687_cov_4.473635:2414..4651+ (Gracilaria caudata M_176_S67 male)
ATGCGTTCGCCACAATCAAGTTCGCCGCCGTCCACAATGCATGCGCCGTC
AATCGACGCCACTGTCGATGAGGATACACTTGCCACTGCCACCTTGGACC
ATCGTCGCTCCTCCATGCGTTCGGCCGCCGCAAACTTCAAGAGCTTGGCG
CCACAGTCGCCCACAGATTACCGTCGCTTGACCATTGCGCCGGCCTTACG
CTCGCAACAGGAAGTCGTTGGAGCCAGCAACCTGCGCCGAGCTATCTCGC
TTCGACAGCGCTGGTTGTACCGACGAAACGTACCTGAATGGTATAACTAT
GCACAGTCTAAACCGCGCTCTTACGCTGACGCTGCTTCCCCACTTGTTCC
ACCTCCATATGACCCGTTTTGCATGCCCTCTTCGCCGCCTACCCACCATG
TTTTTCGCTGGAAAAACGGCGTTGTCAGTGTATATGCTGATCAGCAAGCG
GTCACTAACAACTGCACACAGATTAAGGGCACCACGCTCTCTGACTTTGC
AAAAGATCTCGTTTCGTTGTCCGCTATTATGAATGACCCAGACACAAGGT
CCTTCTGTCACCGCAGATTGGTTTTGCTGCATGAACGCTTCAATATGCAC
ATATTGCTCAATGAAAACCAGGAACGATTGAATCAAATCGCCGTTCCACA
TCGTGATTTTTACAACGTCAGCAAGGTCGACGTGCACGTTCATCATTCTT
CAATGTCCAATCAGAAGCACTTTCTCACCTTCATCAAGCGAAAAGTGAAG
CAAGATGGCGATCAGAAAGTGCTTGCCAATCGAGAAGATCCCAATGGCGA
ACCGCTAACTCTTACCCAAGTGTTCAAATCCCTCAAACTTCAACCGCACG
AATTGAGTGTTGATACGCTTGATGTACATGCCGATAATACCATCTTCCAT
AGATTCGATCGTTTCAACCTAAAGTACAATCCATTTGGTCAGTCTAGACT
GCGAGAGATTTTTATGAAGACTGATAATTACATCAAGGGAAAGTACCTGG
CAGAACTCACTCACGAGGTGTTTTCCGATCTGCGATTTACGAAATACCAA
AACAGCGAGTACCGTATAAGCATCTACGGCAGAGATATCAACGAATGGGA
TAACCTTGGGGCATGGTTTCTTGATCATGAGATATTCAGTCCCAATGTGC
GTTGGCTCATTCAAATTCCACGTCTCTACAGTATCTACAAGCAGAAGGGA
CGACTCAGATCGTTTCAAGACATGTTGGACAACATCTTTAACCCTATTTT
TGAAGCCACTGTGAACCCCTCGTCCCACCCGAAAGTCGCATGTCTTTTGC
AGCAGATTGTGGGATTCGATTCTGTCGATGATGAGAGTCAGCCACAACCT
CGAGTGGATTTGAGAAGGTGTGGGCCTCCTGAAAAATGGAAAAGCGAGGA
AAATCCACCATATAGTTACTATTCGTTCTTCATATATAGCAACCTGGCTG
TCCTGAACCAACTGCGAGAGTCTAAAGGTATGAACACGTTCACGTATCGA
CCACATGCCGGTGAGGCCGGCGACATTGAGCACCTTGCGACGTCATTTCT
TCTGGCGCATGGAATCAATCATGGCTTGAACCTCAAAAAGAGCCCAGTGT
TGCAGTATCTGTTCTACGTCACCCAAATCGGAGTTGCAATGAGCCCGCTC
AGTAATAACGCCCTGTTCTGCGAGATTACCAAGAACCCGTTGCCGACCTT
CTTCAAACGGGGCTTGAATGTAACCTTGTCAACTGATGATCCGCTTCAGT
TTGCTTTCACTCGAGAACCGCTCATGGAGGAGTACTCAGTTGCTGCCCAG
GTATGGAAGCTTTCAAACACGGATCTGTGTGAGCTCGCGCGAAACTCTGT
ACTGCAATCTGGATTTGAACCGTGCGTGAAGGCCAGCTGGTTAGGGGCGA
CGTGGTATTTGAGCGGACAAGCGGGAAATGATATTTCAAAGACAAATGTC
CCGTCAATACGACTTTGCTATCGGTACGAGACTCTTTTGGAAGAAATCAA
GTTAATATATGACGGGGAAGTGCCGGACGAAATTCATGTCTTGCCGACTT
TCTCGTACACAAAAAGAGGGAACGAACCTGTTCAAATACCTGGGAACGAA
GAAAGTAAGCAGCAAGTTCCCTCTGCGGCAGGAACCGTAGACCCCTTTGG
CAATGGAGAATTCCTTGAAGGGGACGACTTTCACAACTGTGGGTTGTCAG
AGGATGAAGAAGTTCTCATTGCGGAAGATGAGATGTAA