Gcaud10087.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10087.t1
Unique NameGcaud10087.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length238
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_1573_length_9687_cov_4.473635contigNODE_1573_length_9687_cov_4.473635:1214..1927 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog192875.XP_004347362.1
Preferred namePHOSPHO2
PFAMsPut_Phosphatase
Max annot lvl33154|Opisthokonta
KEGG rclassRC00017
KEGG koko:K13248
KEGG ReactionR00173,R01911,R02494
KEGG Pathwayko00750,ko01100,map00750,map01100
GOsGO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016462,GO:0016787,GO:0016788,GO:0016791,GO:0016817,GO:0016818,GO:0042578,GO:0044237
Evalue1.21e-27
EggNOG OGsKOG3120@1|root,KOG3120@2759|Eukaryota,39S7P@33154|Opisthokonta
EC3.1.3.74
Descriptionpyridoxal phosphatase activity
COG categoryS
BRITEko00000,ko00001,ko01000,ko01009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10087Gcaud10087Gracilaria caudata M_176_S67 malegeneNODE_1573_length_9687_cov_4.473635 1214..1927 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10087.t1.stop1Gcaud10087.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_1573_length_9687_cov_4.473635 1214..1216 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10087.t1.CDS1Gcaud10087.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_1573_length_9687_cov_4.473635 1214..1927 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10087.t1.exon1Gcaud10087.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_1573_length_9687_cov_4.473635 1214..1927 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10087.t1.start1Gcaud10087.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_1573_length_9687_cov_4.473635 1925..1927 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10087.t1Gcaud10087.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_1573_length_9687_cov_4.473635 1214..1927 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10087.t1 ID=Gcaud10087.t1|Name=Gcaud10087.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=238bp
MASFLFVFDFDHTLVDLNLDLQPLNQLAPDLLASHIDDPKQRSAGWTALM
NTVLHILHDRRISSAQILSTIESTNVHSATKSTLNTLFETPQVHCAIISD
ANSLYINTCLRANRIDPSLFDAGIYTNPAFIRDDKISVIPYATDGHACRS
CPANLCKSAVLTQLQTRYPSNRIVYVGDGSNDYCPAKRVPVDGYVLPRKS
FRLERLILKHGQVNAQVQAWASEQQLQSAVQQILQPN*
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spliced messenger RNA

>Gcaud10087.t1 ID=Gcaud10087.t1|Name=Gcaud10087.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=714bp|location=Sequence derived from alignment at NODE_1573_length_9687_cov_4.473635:1214..1927- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCTTTTCTCTTCGTCTTCGACTTTGACCACACTCTGGTCGACCT
CAACCTCGATCTTCAGCCACTCAATCAACTCGCGCCCGATCTTCTCGCCT
CGCACATCGACGACCCCAAGCAGCGCAGCGCAGGATGGACCGCCCTCATG
AACACCGTTCTTCACATTCTCCACGACCGTCGCATCTCATCCGCCCAGAT
TCTTTCCACCATTGAAAGCACCAACGTTCATTCCGCCACCAAGAGCACCT
TGAACACGCTTTTCGAAACACCGCAAGTACACTGTGCCATCATATCCGAT
GCAAACTCGCTCTACATCAACACTTGCCTTCGAGCGAATCGAATCGACCC
TTCTTTATTCGACGCTGGAATCTATACTAATCCCGCCTTTATTCGTGACG
ACAAAATATCCGTTATACCGTACGCAACTGACGGTCATGCCTGTCGCTCC
TGTCCCGCCAACTTGTGCAAATCGGCCGTTCTAACTCAACTGCAGACGCG
CTACCCATCCAACCGAATCGTCTACGTGGGCGATGGATCCAACGACTATT
GTCCCGCAAAGCGCGTGCCCGTCGATGGTTACGTGCTTCCTCGAAAGTCA
TTTCGACTTGAGCGCCTCATACTGAAACACGGACAGGTTAATGCTCAAGT
GCAAGCGTGGGCATCTGAGCAACAACTACAATCAGCTGTACAACAAATTT
TGCAACCTAACTGA
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protein sequence of Gcaud10087.t1

>Gcaud10087.t1 ID=Gcaud10087.t1|Name=Gcaud10087.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=238bp
MASFLFVFDFDHTLVDLNLDLQPLNQLAPDLLASHIDDPKQRSAGWTALM
NTVLHILHDRRISSAQILSTIESTNVHSATKSTLNTLFETPQVHCAIISD
ANSLYINTCLRANRIDPSLFDAGIYTNPAFIRDDKISVIPYATDGHACRS
CPANLCKSAVLTQLQTRYPSNRIVYVGDGSNDYCPAKRVPVDGYVLPRKS
FRLERLILKHGQVNAQVQAWASEQQLQSAVQQILQPN*
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mRNA from alignment at NODE_1573_length_9687_cov_4.473635:1214..1927-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10087.t1 ID=Gcaud10087.t1|Name=Gcaud10087.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=714bp|location=Sequence derived from alignment at NODE_1573_length_9687_cov_4.473635:1214..1927- (Gracilaria caudata M_176_S67 male)
ATGGCGTCTTTTCTCTTCGTCTTCGACTTTGACCACACTCTGGTCGACCT
CAACCTCGATCTTCAGCCACTCAATCAACTCGCGCCCGATCTTCTCGCCT
CGCACATCGACGACCCCAAGCAGCGCAGCGCAGGATGGACCGCCCTCATG
AACACCGTTCTTCACATTCTCCACGACCGTCGCATCTCATCCGCCCAGAT
TCTTTCCACCATTGAAAGCACCAACGTTCATTCCGCCACCAAGAGCACCT
TGAACACGCTTTTCGAAACACCGCAAGTACACTGTGCCATCATATCCGAT
GCAAACTCGCTCTACATCAACACTTGCCTTCGAGCGAATCGAATCGACCC
TTCTTTATTCGACGCTGGAATCTATACTAATCCCGCCTTTATTCGTGACG
ACAAAATATCCGTTATACCGTACGCAACTGACGGTCATGCCTGTCGCTCC
TGTCCCGCCAACTTGTGCAAATCGGCCGTTCTAACTCAACTGCAGACGCG
CTACCCATCCAACCGAATCGTCTACGTGGGCGATGGATCCAACGACTATT
GTCCCGCAAAGCGCGTGCCCGTCGATGGTTACGTGCTTCCTCGAAAGTCA
TTTCGACTTGAGCGCCTCATACTGAAACACGGACAGGTTAATGCTCAAGT
GCAAGCGTGGGCATCTGAGCAACAACTACAATCAGCTGTACAACAAATTT
TGCAACCTAACTGA
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Coding sequence (CDS) from alignment at NODE_1573_length_9687_cov_4.473635:1214..1927-

>Gcaud10087.t1 ID=Gcaud10087.t1|Name=Gcaud10087.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=714bp|location=Sequence derived from alignment at NODE_1573_length_9687_cov_4.473635:1214..1927- (Gracilaria caudata M_176_S67 male)
ATGGCGTCTTTTCTCTTCGTCTTCGACTTTGACCACACTCTGGTCGACCT
CAACCTCGATCTTCAGCCACTCAATCAACTCGCGCCCGATCTTCTCGCCT
CGCACATCGACGACCCCAAGCAGCGCAGCGCAGGATGGACCGCCCTCATG
AACACCGTTCTTCACATTCTCCACGACCGTCGCATCTCATCCGCCCAGAT
TCTTTCCACCATTGAAAGCACCAACGTTCATTCCGCCACCAAGAGCACCT
TGAACACGCTTTTCGAAACACCGCAAGTACACTGTGCCATCATATCCGAT
GCAAACTCGCTCTACATCAACACTTGCCTTCGAGCGAATCGAATCGACCC
TTCTTTATTCGACGCTGGAATCTATACTAATCCCGCCTTTATTCGTGACG
ACAAAATATCCGTTATACCGTACGCAACTGACGGTCATGCCTGTCGCTCC
TGTCCCGCCAACTTGTGCAAATCGGCCGTTCTAACTCAACTGCAGACGCG
CTACCCATCCAACCGAATCGTCTACGTGGGCGATGGATCCAACGACTATT
GTCCCGCAAAGCGCGTGCCCGTCGATGGTTACGTGCTTCCTCGAAAGTCA
TTTCGACTTGAGCGCCTCATACTGAAACACGGACAGGTTAATGCTCAAGT
GCAAGCGTGGGCATCTGAGCAACAACTACAATCAGCTGTACAACAAATTT
TGCAACCTAACTGA
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