Gcaud10079.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10079.t1
Unique Name	Gcaud10079.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	312

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_519_length_23177_cov_4.254700	contig	NODE_519_length_23177_cov_4.254700:7600..8535 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708326.1
PFAMs	Pkinase,Pkinase_Tyr
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K00870
Evalue	8.68e-93
EggNOG OGs	COG0515@1\|root,KOG0192@2759\|Eukaryota
EC	2.7.1.37
Description	protein kinase activity
COG category	KLT
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10079	Gcaud10079	Gracilaria caudata M_176_S67 male	gene	NODE_519_length_23177_cov_4.254700 7600..8535 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10079.t1.start1	Gcaud10079.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_519_length_23177_cov_4.254700 7600..7602 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10079.t1.CDS1	Gcaud10079.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_519_length_23177_cov_4.254700 7600..8535 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10079.t1.exon1	Gcaud10079.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_519_length_23177_cov_4.254700 7600..8535 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10079.t1.stop1	Gcaud10079.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_519_length_23177_cov_4.254700 8533..8535 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10079.t1	Gcaud10079.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_519_length_23177_cov_4.254700 7600..8535 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_519_length_23177_cov_4.254700:7600..8535+
coding sequence from alignment at NODE_519_length_23177_cov_4.254700:7600..8535+

mRNA sequence

>Gcaud10079.t1 ID=Gcaud10079.t1|Name=Gcaud10079.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=312bp
MQKFLELCRQFENTEYVIEEESITFDRKLGDGASGTTYLGRYDNEKVAIK
VYSASILKNDFNSVKNELQIMSKMRHKNIVQFKGLYLRKDPPGAALVTRF
AEKGELGHALYNTRLVRKKGDAMRFNIVIGLAQGLKYLHSNDVIHRDIKP
ANILLDDDYEPMLTDFGFSRFIDRDQNRQMTGETGSYRYMAPEVTSHSRY
TEKADTYSFALICNEIFMDERPFEYQISLVVARDVVIKNLRPSQKRIKNE
RLKQIIARCWDADPQLRPDWDEVISELQAARSEIELKKSRSTFSSLFKKK
QPAAGSSSEQQ*

spliced messenger RNA

>Gcaud10079.t1 ID=Gcaud10079.t1|Name=Gcaud10079.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=936bp|location=Sequence derived from alignment at NODE_519_length_23177_cov_4.254700:7600..8535+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAAGTTCTTAGAGCTGTGTAGGCAGTTTGAGAACACGGAGTATGT
GATTGAAGAGGAAAGCATCACTTTTGACCGCAAGCTGGGTGACGGTGCGT
CGGGCACCACGTACCTGGGGCGCTATGACAACGAGAAAGTGGCTATCAAG
GTGTACTCTGCGTCCATTCTCAAGAACGATTTCAACTCAGTCAAGAACGA
GCTGCAGATTATGAGCAAGATGCGTCACAAGAACATCGTGCAGTTCAAGG
GCTTGTATCTGAGAAAGGACCCCCCGGGCGCTGCACTGGTCACCCGTTTC
GCCGAAAAGGGCGAGCTTGGGCATGCGCTGTACAACACGCGTCTGGTTCG
TAAGAAGGGCGATGCCATGCGCTTCAACATTGTGATAGGGCTGGCTCAGG
GGCTCAAGTATCTGCATTCCAACGACGTGATTCACCGCGACATCAAGCCC
GCCAACATTCTACTCGACGATGATTATGAACCCATGCTCACCGACTTTGG
CTTCAGTCGCTTCATCGACCGTGACCAGAACAGACAGATGACCGGAGAGA
CCGGCTCGTATCGCTACATGGCGCCCGAGGTGACCAGTCACAGCCGCTAC
ACAGAGAAGGCCGATACGTACAGCTTCGCGCTCATTTGCAACGAGATTTT
CATGGACGAGCGCCCGTTTGAGTACCAAATCTCGCTCGTGGTGGCGCGTG
ATGTGGTCATCAAGAATCTCAGACCGTCTCAGAAGAGAATTAAGAACGAG
CGTCTCAAGCAAATCATTGCGCGTTGTTGGGACGCCGACCCGCAGCTGCG
ACCGGACTGGGACGAAGTGATTTCCGAGCTGCAAGCCGCCAGGTCCGAAA
TCGAGCTCAAGAAGTCCCGAAGTACCTTTTCCTCTTTGTTCAAAAAGAAG
CAGCCCGCTGCTGGTTCTTCTAGTGAACAGCAGTGA

protein sequence of Gcaud10079.t1

>Gcaud10079.t1 ID=Gcaud10079.t1|Name=Gcaud10079.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=312bp
MQKFLELCRQFENTEYVIEEESITFDRKLGDGASGTTYLGRYDNEKVAIK
VYSASILKNDFNSVKNELQIMSKMRHKNIVQFKGLYLRKDPPGAALVTRF
AEKGELGHALYNTRLVRKKGDAMRFNIVIGLAQGLKYLHSNDVIHRDIKP
ANILLDDDYEPMLTDFGFSRFIDRDQNRQMTGETGSYRYMAPEVTSHSRY
TEKADTYSFALICNEIFMDERPFEYQISLVVARDVVIKNLRPSQKRIKNE
RLKQIIARCWDADPQLRPDWDEVISELQAARSEIELKKSRSTFSSLFKKK
QPAAGSSSEQQ*

mRNA from alignment at NODE_519_length_23177_cov_4.254700:7600..8535+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10079.t1 ID=Gcaud10079.t1|Name=Gcaud10079.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=936bp|location=Sequence derived from alignment at NODE_519_length_23177_cov_4.254700:7600..8535+ (Gracilaria caudata M_176_S67 male)
ATGCAGAAGTTCTTAGAGCTGTGTAGGCAGTTTGAGAACACGGAGTATGT
GATTGAAGAGGAAAGCATCACTTTTGACCGCAAGCTGGGTGACGGTGCGT
CGGGCACCACGTACCTGGGGCGCTATGACAACGAGAAAGTGGCTATCAAG
GTGTACTCTGCGTCCATTCTCAAGAACGATTTCAACTCAGTCAAGAACGA
GCTGCAGATTATGAGCAAGATGCGTCACAAGAACATCGTGCAGTTCAAGG
GCTTGTATCTGAGAAAGGACCCCCCGGGCGCTGCACTGGTCACCCGTTTC
GCCGAAAAGGGCGAGCTTGGGCATGCGCTGTACAACACGCGTCTGGTTCG
TAAGAAGGGCGATGCCATGCGCTTCAACATTGTGATAGGGCTGGCTCAGG
GGCTCAAGTATCTGCATTCCAACGACGTGATTCACCGCGACATCAAGCCC
GCCAACATTCTACTCGACGATGATTATGAACCCATGCTCACCGACTTTGG
CTTCAGTCGCTTCATCGACCGTGACCAGAACAGACAGATGACCGGAGAGA
CCGGCTCGTATCGCTACATGGCGCCCGAGGTGACCAGTCACAGCCGCTAC
ACAGAGAAGGCCGATACGTACAGCTTCGCGCTCATTTGCAACGAGATTTT
CATGGACGAGCGCCCGTTTGAGTACCAAATCTCGCTCGTGGTGGCGCGTG
ATGTGGTCATCAAGAATCTCAGACCGTCTCAGAAGAGAATTAAGAACGAG
CGTCTCAAGCAAATCATTGCGCGTTGTTGGGACGCCGACCCGCAGCTGCG
ACCGGACTGGGACGAAGTGATTTCCGAGCTGCAAGCCGCCAGGTCCGAAA
TCGAGCTCAAGAAGTCCCGAAGTACCTTTTCCTCTTTGTTCAAAAAGAAG
CAGCCCGCTGCTGGTTCTTCTAGTGAACAGCAGTGA

Coding sequence (CDS) from alignment at NODE_519_length_23177_cov_4.254700:7600..8535+

>Gcaud10079.t1 ID=Gcaud10079.t1|Name=Gcaud10079.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=936bp|location=Sequence derived from alignment at NODE_519_length_23177_cov_4.254700:7600..8535+ (Gracilaria caudata M_176_S67 male)
ATGCAGAAGTTCTTAGAGCTGTGTAGGCAGTTTGAGAACACGGAGTATGT
GATTGAAGAGGAAAGCATCACTTTTGACCGCAAGCTGGGTGACGGTGCGT
CGGGCACCACGTACCTGGGGCGCTATGACAACGAGAAAGTGGCTATCAAG
GTGTACTCTGCGTCCATTCTCAAGAACGATTTCAACTCAGTCAAGAACGA
GCTGCAGATTATGAGCAAGATGCGTCACAAGAACATCGTGCAGTTCAAGG
GCTTGTATCTGAGAAAGGACCCCCCGGGCGCTGCACTGGTCACCCGTTTC
GCCGAAAAGGGCGAGCTTGGGCATGCGCTGTACAACACGCGTCTGGTTCG
TAAGAAGGGCGATGCCATGCGCTTCAACATTGTGATAGGGCTGGCTCAGG
GGCTCAAGTATCTGCATTCCAACGACGTGATTCACCGCGACATCAAGCCC
GCCAACATTCTACTCGACGATGATTATGAACCCATGCTCACCGACTTTGG
CTTCAGTCGCTTCATCGACCGTGACCAGAACAGACAGATGACCGGAGAGA
CCGGCTCGTATCGCTACATGGCGCCCGAGGTGACCAGTCACAGCCGCTAC
ACAGAGAAGGCCGATACGTACAGCTTCGCGCTCATTTGCAACGAGATTTT
CATGGACGAGCGCCCGTTTGAGTACCAAATCTCGCTCGTGGTGGCGCGTG
ATGTGGTCATCAAGAATCTCAGACCGTCTCAGAAGAGAATTAAGAACGAG
CGTCTCAAGCAAATCATTGCGCGTTGTTGGGACGCCGACCCGCAGCTGCG
ACCGGACTGGGACGAAGTGATTTCCGAGCTGCAAGCCGCCAGGTCCGAAA
TCGAGCTCAAGAAGTCCCGAAGTACCTTTTCCTCTTTGTTCAAAAAGAAG
CAGCCCGCTGCTGGTTCTTCTAGTGAACAGCAGTGA