Gcaud10078.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10078.t1
Unique NameGcaud10078.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length375
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_519_length_23177_cov_4.254700contigNODE_519_length_23177_cov_4.254700:5022..6315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6500.XP_005092788.1
Preferred nameCTU2
PFAMsCTU2
Max annot lvl33208|Metazoa
KEGG koko:K14169
KEGG Pathwayko04122,map04122
GOsGO:0002097,GO:0002098,GO:0002143,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016782,GO:0016783,GO:0032991,GO:0034227,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360
Evalue8.78e-07
EggNOG OGsKOG2594@1|root,KOG2594@2759|Eukaryota,391PT@33154|Opisthokonta,3BID3@33208|Metazoa,3CSHW@33213|Bilateria
DescriptiontRNA thio-modification
COG categoryM
BRITEko00000,ko00001,ko03016
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10078Gcaud10078Gracilaria caudata M_176_S67 malegeneNODE_519_length_23177_cov_4.254700 5022..6315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10078.t1Gcaud10078.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_519_length_23177_cov_4.254700 5022..6315 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10078.t1.stop1Gcaud10078.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_519_length_23177_cov_4.254700 5022..5024 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10078.t1.CDS1Gcaud10078.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_519_length_23177_cov_4.254700 5022..6132 -
Gcaud10078.t1.CDS2Gcaud10078.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_519_length_23177_cov_4.254700 6302..6315 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10078.t1.exon1Gcaud10078.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_519_length_23177_cov_4.254700 5022..6132 -
Gcaud10078.t1.exon2Gcaud10078.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_519_length_23177_cov_4.254700 6302..6315 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10078.t1.intron1Gcaud10078.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_519_length_23177_cov_4.254700 6133..6301 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10078.t1.start1Gcaud10078.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_519_length_23177_cov_4.254700 6313..6315 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10078.t1 ID=Gcaud10078.t1|Name=Gcaud10078.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=375bp
LLSFSFQHVHQHLTNHTRLPTRTAMSPKCKRCNSPATVYMADSPRCTNCF
THYMHKTFKSALGRLGGGGRRNLALALSGGPTSVALCLLYAHYVSTLVPN
PKAPKIRPVILHVSDTEPPPVVQTVVKLVPNAVLRVIRPAFDASKIRDIN
DRVSMQHTAVFRALLDAVSEHECEALVLGTCASRAAADVLKALIFGRGSA
VKDHSCGNLELDGVKILRPVRDIPARLLVRYAYMQLPHTCFVNSEESGAG
IHTVTHRFIQHAAADNAASVHNVVRTADKLINIEGRSCVLCRSVISTREP
QNGKSSQGCGDCQDCGCSESFQLCKACRACVDRANGEQNAVLEVITEVAT
KQKRRLAREDMRKQIADFLLDDDT*
back to top

spliced messenger RNA

>Gcaud10078.t1 ID=Gcaud10078.t1|Name=Gcaud10078.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1125bp|location=Sequence derived from alignment at NODE_519_length_23177_cov_4.254700:5022..6315- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGCTCTCTTTTAGCTTCCAACACGTCCATCAACACCTCACAAACCACAC
GCGTCTGCCAACTCGCACAGCCATGTCGCCAAAGTGCAAGCGCTGCAACT
CGCCAGCCACCGTATATATGGCAGACTCCCCGCGATGCACCAATTGTTTC
ACCCATTACATGCACAAGACCTTCAAAAGCGCTCTCGGCCGTCTGGGAGG
CGGAGGGCGTCGGAACCTCGCCCTAGCCTTATCCGGAGGGCCCACATCTG
TGGCGCTTTGTCTTTTGTACGCACACTACGTATCTACGCTGGTACCAAAC
CCAAAAGCCCCCAAAATCCGGCCCGTTATACTTCACGTTAGCGATACGGA
ACCGCCGCCCGTGGTGCAAACCGTCGTGAAACTTGTTCCCAACGCTGTTT
TACGGGTCATACGTCCGGCATTTGATGCTAGTAAAATTCGGGACATCAAC
GACCGCGTCAGTATGCAGCACACGGCTGTATTTCGGGCTTTACTAGACGC
TGTTTCGGAACACGAATGTGAGGCGTTGGTGCTTGGTACATGCGCGAGTC
GTGCTGCTGCCGATGTGTTGAAAGCCCTTATCTTTGGCAGAGGAAGCGCA
GTCAAGGACCACAGCTGTGGTAATCTTGAATTAGATGGTGTCAAGATACT
TCGGCCCGTGCGAGATATCCCGGCCAGATTGCTGGTGCGGTATGCTTACA
TGCAACTTCCTCATACTTGCTTTGTGAACAGCGAAGAAAGTGGTGCTGGC
ATTCATACTGTCACACATCGATTTATTCAACATGCGGCAGCCGACAACGC
CGCGTCAGTACACAATGTAGTGCGAACGGCAGACAAGTTAATCAATATTG
AGGGCCGATCATGCGTTCTTTGTAGGAGTGTTATCAGCACCCGTGAACCA
CAAAACGGTAAGAGTAGTCAAGGTTGTGGTGATTGTCAGGATTGTGGCTG
TTCCGAAAGCTTCCAACTGTGCAAAGCGTGTCGTGCCTGTGTCGATCGTG
CCAATGGTGAACAAAACGCTGTACTGGAAGTTATCACCGAAGTCGCGACG
AAGCAAAAGAGACGTCTTGCGAGAGAAGATATGCGAAAGCAAATTGCAGA
CTTTCTGCTGGACGACGATACTTGA
back to top

protein sequence of Gcaud10078.t1

>Gcaud10078.t1 ID=Gcaud10078.t1|Name=Gcaud10078.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=375bp
LLSFSFQHVHQHLTNHTRLPTRTAMSPKCKRCNSPATVYMADSPRCTNCF
THYMHKTFKSALGRLGGGGRRNLALALSGGPTSVALCLLYAHYVSTLVPN
PKAPKIRPVILHVSDTEPPPVVQTVVKLVPNAVLRVIRPAFDASKIRDIN
DRVSMQHTAVFRALLDAVSEHECEALVLGTCASRAAADVLKALIFGRGSA
VKDHSCGNLELDGVKILRPVRDIPARLLVRYAYMQLPHTCFVNSEESGAG
IHTVTHRFIQHAAADNAASVHNVVRTADKLINIEGRSCVLCRSVISTREP
QNGKSSQGCGDCQDCGCSESFQLCKACRACVDRANGEQNAVLEVITEVAT
KQKRRLAREDMRKQIADFLLDDDT*
back to top

mRNA from alignment at NODE_519_length_23177_cov_4.254700:5022..6315-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10078.t1 ID=Gcaud10078.t1|Name=Gcaud10078.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1294bp|location=Sequence derived from alignment at NODE_519_length_23177_cov_4.254700:5022..6315- (Gracilaria caudata M_176_S67 male)
TTGCTCTCTTTTAGGTAGGTGCTAATCAGCGTCCCCATCCGCTCAATACA
TCGGAGTCGCGAAAACGACCAACCCGTTTCCTCCGACCTTCGCATATCTC
TCCCTGTGTCTCGTCAGCGCTGTTAACGCGACACCTACACACCCTCATCC
TCCTACAACTGCGCCGCCATTCGAATCTTGCAGCTTCCAACACGTCCATC
AACACCTCACAAACCACACGCGTCTGCCAACTCGCACAGCCATGTCGCCA
AAGTGCAAGCGCTGCAACTCGCCAGCCACCGTATATATGGCAGACTCCCC
GCGATGCACCAATTGTTTCACCCATTACATGCACAAGACCTTCAAAAGCG
CTCTCGGCCGTCTGGGAGGCGGAGGGCGTCGGAACCTCGCCCTAGCCTTA
TCCGGAGGGCCCACATCTGTGGCGCTTTGTCTTTTGTACGCACACTACGT
ATCTACGCTGGTACCAAACCCAAAAGCCCCCAAAATCCGGCCCGTTATAC
TTCACGTTAGCGATACGGAACCGCCGCCCGTGGTGCAAACCGTCGTGAAA
CTTGTTCCCAACGCTGTTTTACGGGTCATACGTCCGGCATTTGATGCTAG
TAAAATTCGGGACATCAACGACCGCGTCAGTATGCAGCACACGGCTGTAT
TTCGGGCTTTACTAGACGCTGTTTCGGAACACGAATGTGAGGCGTTGGTG
CTTGGTACATGCGCGAGTCGTGCTGCTGCCGATGTGTTGAAAGCCCTTAT
CTTTGGCAGAGGAAGCGCAGTCAAGGACCACAGCTGTGGTAATCTTGAAT
TAGATGGTGTCAAGATACTTCGGCCCGTGCGAGATATCCCGGCCAGATTG
CTGGTGCGGTATGCTTACATGCAACTTCCTCATACTTGCTTTGTGAACAG
CGAAGAAAGTGGTGCTGGCATTCATACTGTCACACATCGATTTATTCAAC
ATGCGGCAGCCGACAACGCCGCGTCAGTACACAATGTAGTGCGAACGGCA
GACAAGTTAATCAATATTGAGGGCCGATCATGCGTTCTTTGTAGGAGTGT
TATCAGCACCCGTGAACCACAAAACGGTAAGAGTAGTCAAGGTTGTGGTG
ATTGTCAGGATTGTGGCTGTTCCGAAAGCTTCCAACTGTGCAAAGCGTGT
CGTGCCTGTGTCGATCGTGCCAATGGTGAACAAAACGCTGTACTGGAAGT
TATCACCGAAGTCGCGACGAAGCAAAAGAGACGTCTTGCGAGAGAAGATA
TGCGAAAGCAAATTGCAGACTTTCTGCTGGACGACGATACTTGA
back to top

Coding sequence (CDS) from alignment at NODE_519_length_23177_cov_4.254700:5022..6315-

>Gcaud10078.t1 ID=Gcaud10078.t1|Name=Gcaud10078.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1125bp|location=Sequence derived from alignment at NODE_519_length_23177_cov_4.254700:5022..6315- (Gracilaria caudata M_176_S67 male)
TTGCTCTCTTTTAGCTTCCAACACGTCCATCAACACCTCACAAACCACAC
GCGTCTGCCAACTCGCACAGCCATGTCGCCAAAGTGCAAGCGCTGCAACT
CGCCAGCCACCGTATATATGGCAGACTCCCCGCGATGCACCAATTGTTTC
ACCCATTACATGCACAAGACCTTCAAAAGCGCTCTCGGCCGTCTGGGAGG
CGGAGGGCGTCGGAACCTCGCCCTAGCCTTATCCGGAGGGCCCACATCTG
TGGCGCTTTGTCTTTTGTACGCACACTACGTATCTACGCTGGTACCAAAC
CCAAAAGCCCCCAAAATCCGGCCCGTTATACTTCACGTTAGCGATACGGA
ACCGCCGCCCGTGGTGCAAACCGTCGTGAAACTTGTTCCCAACGCTGTTT
TACGGGTCATACGTCCGGCATTTGATGCTAGTAAAATTCGGGACATCAAC
GACCGCGTCAGTATGCAGCACACGGCTGTATTTCGGGCTTTACTAGACGC
TGTTTCGGAACACGAATGTGAGGCGTTGGTGCTTGGTACATGCGCGAGTC
GTGCTGCTGCCGATGTGTTGAAAGCCCTTATCTTTGGCAGAGGAAGCGCA
GTCAAGGACCACAGCTGTGGTAATCTTGAATTAGATGGTGTCAAGATACT
TCGGCCCGTGCGAGATATCCCGGCCAGATTGCTGGTGCGGTATGCTTACA
TGCAACTTCCTCATACTTGCTTTGTGAACAGCGAAGAAAGTGGTGCTGGC
ATTCATACTGTCACACATCGATTTATTCAACATGCGGCAGCCGACAACGC
CGCGTCAGTACACAATGTAGTGCGAACGGCAGACAAGTTAATCAATATTG
AGGGCCGATCATGCGTTCTTTGTAGGAGTGTTATCAGCACCCGTGAACCA
CAAAACGGTAAGAGTAGTCAAGGTTGTGGTGATTGTCAGGATTGTGGCTG
TTCCGAAAGCTTCCAACTGTGCAAAGCGTGTCGTGCCTGTGTCGATCGTG
CCAATGGTGAACAAAACGCTGTACTGGAAGTTATCACCGAAGTCGCGACG
AAGCAAAAGAGACGTCTTGCGAGAGAAGATATGCGAAAGCAAATTGCAGA
CTTTCTGCTGGACGACGATACTTGA
back to top