Gcaud10070.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10070.t1
Unique Name	Gcaud10070.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	264

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_489_length_23951_cov_4.549455	contig	NODE_489_length_23951_cov_4.549455:21598..22389 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1123229.AUBC01000013_gene2582
PFAMs	Fasciclin
Max annot lvl	28211\|Alphaproteobacteria
Evalue	3.1e-28
EggNOG OGs	COG2335@1\|root,COG2335@2\|Bacteria,1RD06@1224\|Proteobacteria,2U7H5@28211\|Alphaproteobacteria,3JYDJ@41294\|Bradyrhizobiaceae
Description	Four repeated domains in the Fasciclin I family of proteins, present in many other contexts.
COG category	M

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10070	Gcaud10070	Gracilaria caudata M_176_S67 male	gene	NODE_489_length_23951_cov_4.549455 21598..22389 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10070.t1.start1	Gcaud10070.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_489_length_23951_cov_4.549455 21598..21600 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10070.t1.CDS1	Gcaud10070.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_489_length_23951_cov_4.549455 21598..22389 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10070.t1.exon1	Gcaud10070.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_489_length_23951_cov_4.549455 21598..22389 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10070.t1.stop1	Gcaud10070.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_489_length_23951_cov_4.549455 22387..22389 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10070.t1	Gcaud10070.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_489_length_23951_cov_4.549455 21598..22389 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_489_length_23951_cov_4.549455:21598..22389+
coding sequence from alignment at NODE_489_length_23951_cov_4.549455:21598..22389+

mRNA sequence

>Gcaud10070.t1 ID=Gcaud10070.t1|Name=Gcaud10070.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=264bp
MCAFIPQTALSAFTGNRLNHASAVAPLRPRSSEALARAPLRMVAYPYTGS
GYGAAGVPYGSDRFGQSFKQTTAMDVVDTAAAVPLFSTLVALLKETGLDY
ELAKGGPFTVLAPTDSAFAALLEPHGFSVLSGLLRPENRQELRKVLSYHV
VKGNVSSGAVAAAGKITGETLAGDTITLMGYNKKLSAGTARIIKTDVPCS
NGVIHVIGSVLIPNSFTPQPTGPKTQNFISSTVLDVYGTMVLPRQALGID
PLPGASSSSALTV*

spliced messenger RNA

>Gcaud10070.t1 ID=Gcaud10070.t1|Name=Gcaud10070.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=792bp|location=Sequence derived from alignment at NODE_489_length_23951_cov_4.549455:21598..22389+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGCCTTCATTCCTCAGACCGCGCTCTCCGCGTTCACCGGAAACCG
TCTTAACCATGCCTCCGCCGTAGCGCCGCTCCGGCCGCGCTCCTCCGAAG
CGCTCGCGCGCGCTCCGCTTCGAATGGTGGCATACCCGTACACCGGCAGC
GGGTACGGCGCGGCGGGCGTTCCATATGGATCCGATCGTTTTGGACAGTC
GTTCAAGCAAACCACGGCGATGGATGTCGTCGACACAGCGGCGGCAGTGC
CGCTATTCTCCACGCTGGTGGCGTTGTTGAAGGAGACTGGTCTGGACTAT
GAGTTGGCCAAAGGTGGTCCTTTTACTGTGCTTGCGCCTACCGACTCTGC
GTTTGCGGCGCTGCTTGAACCGCATGGCTTCTCTGTGTTGAGCGGTCTGT
TGCGCCCCGAGAATCGCCAAGAACTGCGCAAGGTTTTGTCGTATCATGTT
GTGAAGGGTAACGTGTCATCTGGTGCAGTGGCTGCGGCTGGAAAGATTAC
TGGCGAGACGCTTGCTGGCGACACCATAACGCTTATGGGATATAACAAGA
AACTTTCTGCGGGTACCGCTCGAATCATCAAGACAGACGTACCTTGTTCG
AATGGCGTTATTCATGTGATTGGGTCCGTGTTGATACCAAACTCATTCAC
ACCACAACCGACCGGGCCGAAGACACAGAACTTCATTAGCTCTACGGTAC
TTGATGTGTATGGTACGATGGTTCTGCCACGCCAGGCATTGGGAATTGAC
CCGTTGCCTGGGGCAAGCTCGTCTTCGGCGCTCACAGTTTAA

protein sequence of Gcaud10070.t1

>Gcaud10070.t1 ID=Gcaud10070.t1|Name=Gcaud10070.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=264bp
MCAFIPQTALSAFTGNRLNHASAVAPLRPRSSEALARAPLRMVAYPYTGS
GYGAAGVPYGSDRFGQSFKQTTAMDVVDTAAAVPLFSTLVALLKETGLDY
ELAKGGPFTVLAPTDSAFAALLEPHGFSVLSGLLRPENRQELRKVLSYHV
VKGNVSSGAVAAAGKITGETLAGDTITLMGYNKKLSAGTARIIKTDVPCS
NGVIHVIGSVLIPNSFTPQPTGPKTQNFISSTVLDVYGTMVLPRQALGID
PLPGASSSSALTV*

mRNA from alignment at NODE_489_length_23951_cov_4.549455:21598..22389+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10070.t1 ID=Gcaud10070.t1|Name=Gcaud10070.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=792bp|location=Sequence derived from alignment at NODE_489_length_23951_cov_4.549455:21598..22389+ (Gracilaria caudata M_176_S67 male)
ATGTGCGCCTTCATTCCTCAGACCGCGCTCTCCGCGTTCACCGGAAACCG
TCTTAACCATGCCTCCGCCGTAGCGCCGCTCCGGCCGCGCTCCTCCGAAG
CGCTCGCGCGCGCTCCGCTTCGAATGGTGGCATACCCGTACACCGGCAGC
GGGTACGGCGCGGCGGGCGTTCCATATGGATCCGATCGTTTTGGACAGTC
GTTCAAGCAAACCACGGCGATGGATGTCGTCGACACAGCGGCGGCAGTGC
CGCTATTCTCCACGCTGGTGGCGTTGTTGAAGGAGACTGGTCTGGACTAT
GAGTTGGCCAAAGGTGGTCCTTTTACTGTGCTTGCGCCTACCGACTCTGC
GTTTGCGGCGCTGCTTGAACCGCATGGCTTCTCTGTGTTGAGCGGTCTGT
TGCGCCCCGAGAATCGCCAAGAACTGCGCAAGGTTTTGTCGTATCATGTT
GTGAAGGGTAACGTGTCATCTGGTGCAGTGGCTGCGGCTGGAAAGATTAC
TGGCGAGACGCTTGCTGGCGACACCATAACGCTTATGGGATATAACAAGA
AACTTTCTGCGGGTACCGCTCGAATCATCAAGACAGACGTACCTTGTTCG
AATGGCGTTATTCATGTGATTGGGTCCGTGTTGATACCAAACTCATTCAC
ACCACAACCGACCGGGCCGAAGACACAGAACTTCATTAGCTCTACGGTAC
TTGATGTGTATGGTACGATGGTTCTGCCACGCCAGGCATTGGGAATTGAC
CCGTTGCCTGGGGCAAGCTCGTCTTCGGCGCTCACAGTTTAA

Coding sequence (CDS) from alignment at NODE_489_length_23951_cov_4.549455:21598..22389+

>Gcaud10070.t1 ID=Gcaud10070.t1|Name=Gcaud10070.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=792bp|location=Sequence derived from alignment at NODE_489_length_23951_cov_4.549455:21598..22389+ (Gracilaria caudata M_176_S67 male)
ATGTGCGCCTTCATTCCTCAGACCGCGCTCTCCGCGTTCACCGGAAACCG
TCTTAACCATGCCTCCGCCGTAGCGCCGCTCCGGCCGCGCTCCTCCGAAG
CGCTCGCGCGCGCTCCGCTTCGAATGGTGGCATACCCGTACACCGGCAGC
GGGTACGGCGCGGCGGGCGTTCCATATGGATCCGATCGTTTTGGACAGTC
GTTCAAGCAAACCACGGCGATGGATGTCGTCGACACAGCGGCGGCAGTGC
CGCTATTCTCCACGCTGGTGGCGTTGTTGAAGGAGACTGGTCTGGACTAT
GAGTTGGCCAAAGGTGGTCCTTTTACTGTGCTTGCGCCTACCGACTCTGC
GTTTGCGGCGCTGCTTGAACCGCATGGCTTCTCTGTGTTGAGCGGTCTGT
TGCGCCCCGAGAATCGCCAAGAACTGCGCAAGGTTTTGTCGTATCATGTT
GTGAAGGGTAACGTGTCATCTGGTGCAGTGGCTGCGGCTGGAAAGATTAC
TGGCGAGACGCTTGCTGGCGACACCATAACGCTTATGGGATATAACAAGA
AACTTTCTGCGGGTACCGCTCGAATCATCAAGACAGACGTACCTTGTTCG
AATGGCGTTATTCATGTGATTGGGTCCGTGTTGATACCAAACTCATTCAC
ACCACAACCGACCGGGCCGAAGACACAGAACTTCATTAGCTCTACGGTAC
TTGATGTGTATGGTACGATGGTTCTGCCACGCCAGGCATTGGGAATTGAC
CCGTTGCCTGGGGCAAGCTCGTCTTCGGCGCTCACAGTTTAA