Gcaud10066.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10066.t1
Unique NameGcaud10066.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_489_length_23951_cov_4.549455contigNODE_489_length_23951_cov_4.549455:16257..16816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog42345.XP_008809952.1
PFAMsL51_S25_CI-B8
Max annot lvl35493|Streptophyta
KEGG koko:K03946
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00146
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0008137,GO:0008150,GO:0008152,GO:0016020,GO:0016491,GO:0016651,GO:0016655,GO:0019866,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0050136,GO:0055114,GO:0070469,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1902494,GO:1990204
Evalue8.14e-21
EggNOG OGsKOG3446@1|root,KOG3446@2759|Eukaryota,37VKE@33090|Viridiplantae,3GJRS@35493|Streptophyta,3M0EG@4447|Liliopsida
DescriptionMitochondrial ribosomal protein L51 / S25 / CI-B8 domain
COG categoryC
BRITEko00000,ko00001,ko00002
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10066Gcaud10066Gracilaria caudata M_176_S67 malegeneNODE_489_length_23951_cov_4.549455 16257..16816 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10066.t1Gcaud10066.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_489_length_23951_cov_4.549455 16257..16816 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10066.t1.start1Gcaud10066.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_489_length_23951_cov_4.549455 16257..16259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10066.t1.CDS1Gcaud10066.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_489_length_23951_cov_4.549455 16257..16342 +
Gcaud10066.t1.CDS2Gcaud10066.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_489_length_23951_cov_4.549455 16476..16582 +
Gcaud10066.t1.CDS3Gcaud10066.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_489_length_23951_cov_4.549455 16662..16816 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10066.t1.exon1Gcaud10066.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_489_length_23951_cov_4.549455 16257..16342 +
Gcaud10066.t1.exon2Gcaud10066.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_489_length_23951_cov_4.549455 16476..16582 +
Gcaud10066.t1.exon3Gcaud10066.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_489_length_23951_cov_4.549455 16662..16816 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10066.t1.intron1Gcaud10066.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_489_length_23951_cov_4.549455 16343..16475 +
Gcaud10066.t1.intron2Gcaud10066.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_489_length_23951_cov_4.549455 16583..16661 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10066.t1.stop1Gcaud10066.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_489_length_23951_cov_4.549455 16814..16816 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10066.t1 ID=Gcaud10066.t1|Name=Gcaud10066.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=116bp
MSWRARLSTCLNELRVVYCANSPSSVGTREFLKNNYADLKALNPGLPIYA
RPADGVEPHIAARYARGVYDVKRTSNMTADQVLGIVKEFEAAATVINSRV
GSGIGGDSFKLADVV*
back to top

spliced messenger RNA

>Gcaud10066.t1 ID=Gcaud10066.t1|Name=Gcaud10066.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=348bp|location=Sequence derived from alignment at NODE_489_length_23951_cov_4.549455:16257..16816+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTGGCGAGCAAGACTATCCACTTGCCTAAACGAATTGCGTGTCGT
TTACTGCGCAAACTCCCCATCAAGCGTCGGCACACGGGAGTTTCTTAAGA
ACAACTACGCTGACCTCAAAGCGCTGAATCCCGGTCTCCCCATATATGCC
AGACCCGCGGACGGCGTTGAGCCTCATATTGCAGCCCGATACGCTCGTGG
CGTATACGATGTAAAACGAACGTCGAATATGACTGCGGATCAGGTTTTGG
GCATTGTGAAGGAGTTTGAGGCCGCTGCAACTGTGATCAATAGTAGAGTT
GGAAGTGGAATCGGTGGAGATAGCTTTAAGCTTGCTGATGTCGTTTAA
back to top

protein sequence of Gcaud10066.t1

>Gcaud10066.t1 ID=Gcaud10066.t1|Name=Gcaud10066.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=116bp
MSWRARLSTCLNELRVVYCANSPSSVGTREFLKNNYADLKALNPGLPIYA
RPADGVEPHIAARYARGVYDVKRTSNMTADQVLGIVKEFEAAATVINSRV
GSGIGGDSFKLADVV*
back to top

mRNA from alignment at NODE_489_length_23951_cov_4.549455:16257..16816+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10066.t1 ID=Gcaud10066.t1|Name=Gcaud10066.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=560bp|location=Sequence derived from alignment at NODE_489_length_23951_cov_4.549455:16257..16816+ (Gracilaria caudata M_176_S67 male)
ATGAGCTGGCGAGCAAGACTATCCACTTGCCTAAACGAATTGCGTGTCGT
TTACTGCGCAAACTCCCCATCAAGCGTCGGCACACGGTAAGAATCCGCCT
TCAGATTCAGAGGAACGTAAACCAAGCTCCTTTGCCTGTTTATTCCCCTG
GAGAACATCATGAATGCCAAAGACGCATGCTGACAGAAAGCGGATTTGTT
AACTTGCGGTGCACGTTAGGGAGTTTCTTAAGAACAACTACGCTGACCTC
AAAGCGCTGAATCCCGGTCTCCCCATATATGCCAGACCCGCGGACGGCGT
TGAGCCTCATATTGCAGCCCGATACGGTAAGTAGAAACACCTGCAAAGAG
TTCATCAGCTCTGGATTCGGCATTACAGGGTCTAATTCATTGTTCTCTTT
GGCAGCTCGTGGCGTATACGATGTAAAACGAACGTCGAATATGACTGCGG
ATCAGGTTTTGGGCATTGTGAAGGAGTTTGAGGCCGCTGCAACTGTGATC
AATAGTAGAGTTGGAAGTGGAATCGGTGGAGATAGCTTTAAGCTTGCTGA
TGTCGTTTAA
back to top

Coding sequence (CDS) from alignment at NODE_489_length_23951_cov_4.549455:16257..16816+

>Gcaud10066.t1 ID=Gcaud10066.t1|Name=Gcaud10066.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=348bp|location=Sequence derived from alignment at NODE_489_length_23951_cov_4.549455:16257..16816+ (Gracilaria caudata M_176_S67 male)
ATGAGCTGGCGAGCAAGACTATCCACTTGCCTAAACGAATTGCGTGTCGT
TTACTGCGCAAACTCCCCATCAAGCGTCGGCACACGGGAGTTTCTTAAGA
ACAACTACGCTGACCTCAAAGCGCTGAATCCCGGTCTCCCCATATATGCC
AGACCCGCGGACGGCGTTGAGCCTCATATTGCAGCCCGATACGCTCGTGG
CGTATACGATGTAAAACGAACGTCGAATATGACTGCGGATCAGGTTTTGG
GCATTGTGAAGGAGTTTGAGGCCGCTGCAACTGTGATCAATAGTAGAGTT
GGAAGTGGAATCGGTGGAGATAGCTTTAAGCTTGCTGATGTCGTTTAA
back to top