Gcaud10065.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10065.t1
Unique Name	Gcaud10065.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	272

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_489_length_23951_cov_4.549455	contig	NODE_489_length_23951_cov_4.549455:12800..13615 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10065	Gcaud10065	Gracilaria caudata M_176_S67 male	gene	NODE_489_length_23951_cov_4.549455 12800..13771 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10065.t1.stop1	Gcaud10065.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_489_length_23951_cov_4.549455 12800..12802 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10065.t1.CDS1	Gcaud10065.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_489_length_23951_cov_4.549455 12800..13615 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10065.t1.exon1	Gcaud10065.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_489_length_23951_cov_4.549455 12800..13615 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10065.t1.start1	Gcaud10065.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_489_length_23951_cov_4.549455 13613..13615 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10065.t1	Gcaud10065.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_489_length_23951_cov_4.549455 12800..13615 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_489_length_23951_cov_4.549455:12800..13615-
coding sequence from alignment at NODE_489_length_23951_cov_4.549455:12800..13615-

mRNA sequence

>Gcaud10065.t1 ID=Gcaud10065.t1|Name=Gcaud10065.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=272bp
MSSAVFKPYYADPFADLEPDSTKEDSKATFISCEDSTMMVAKLVEQDAKE
WHGFIIKPSRIVSERVILSMTDGFEEAAEHLVRKVADKRVKFKSLSESFQ
RLYSADNWWRKKSLFLHLHNSLVNLGRSQCHKEDGSSEQKPGLQMLPSSM
AALVKLKIILLRWHSCVPSIWVASPISNLVFCDNMTINETEVVSWYYVSA
ISIGNRERRHYYLEVAPDETVRLWFRRREWVTAIQFTADKSFSTSVPRSV
LHAVDELMEELARSHRKPEDA*

spliced messenger RNA

>Gcaud10065.t1 ID=Gcaud10065.t1|Name=Gcaud10065.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=816bp|location=Sequence derived from alignment at NODE_489_length_23951_cov_4.549455:12800..13615- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCAGCTGTTTTCAAGCCGTACTATGCGGACCCTTTTGCAGATCT
TGAACCCGACAGTACTAAAGAGGATTCAAAAGCGACCTTTATCAGTTGCG
AAGACAGCACAATGATGGTCGCTAAGCTAGTCGAACAAGACGCGAAAGAA
TGGCACGGTTTCATTATAAAACCCTCCCGTATTGTCAGCGAGCGAGTGAT
TCTCTCGATGACTGACGGGTTTGAGGAAGCTGCGGAGCACCTCGTGCGGA
AGGTCGCCGACAAACGTGTGAAATTCAAGAGTCTCTCGGAAAGCTTCCAA
AGATTATACAGCGCAGACAACTGGTGGAGAAAAAAGTCTCTCTTTCTTCA
TTTACACAATAGTCTGGTTAATTTAGGAAGAAGTCAATGCCACAAAGAGG
ACGGTAGTTCAGAACAGAAGCCAGGTTTGCAAATGCTCCCTTCTAGCATG
GCAGCGTTGGTCAAGCTTAAGATCATTTTGCTTCGATGGCACTCTTGCGT
TCCATCAATATGGGTTGCATCCCCGATAAGCAACCTAGTGTTCTGCGACA
ATATGACCATTAACGAAACCGAAGTTGTTTCGTGGTACTATGTGTCGGCC
ATTTCCATTGGAAACCGCGAAAGAAGGCACTACTATCTTGAAGTGGCTCC
AGATGAAACGGTTCGACTGTGGTTCAGACGCCGTGAGTGGGTAACAGCAA
TACAGTTCACCGCTGACAAGTCCTTCTCGACGAGTGTGCCGAGGTCGGTA
CTCCACGCAGTAGATGAACTGATGGAGGAACTAGCCAGAAGCCACAGAAA
ACCCGAGGATGCGTAA

protein sequence of Gcaud10065.t1

>Gcaud10065.t1 ID=Gcaud10065.t1|Name=Gcaud10065.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=272bp
MSSAVFKPYYADPFADLEPDSTKEDSKATFISCEDSTMMVAKLVEQDAKE
WHGFIIKPSRIVSERVILSMTDGFEEAAEHLVRKVADKRVKFKSLSESFQ
RLYSADNWWRKKSLFLHLHNSLVNLGRSQCHKEDGSSEQKPGLQMLPSSM
AALVKLKIILLRWHSCVPSIWVASPISNLVFCDNMTINETEVVSWYYVSA
ISIGNRERRHYYLEVAPDETVRLWFRRREWVTAIQFTADKSFSTSVPRSV
LHAVDELMEELARSHRKPEDA*

mRNA from alignment at NODE_489_length_23951_cov_4.549455:12800..13615-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10065.t1 ID=Gcaud10065.t1|Name=Gcaud10065.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=816bp|location=Sequence derived from alignment at NODE_489_length_23951_cov_4.549455:12800..13615- (Gracilaria caudata M_176_S67 male)
ATGTCATCAGCTGTTTTCAAGCCGTACTATGCGGACCCTTTTGCAGATCT
TGAACCCGACAGTACTAAAGAGGATTCAAAAGCGACCTTTATCAGTTGCG
AAGACAGCACAATGATGGTCGCTAAGCTAGTCGAACAAGACGCGAAAGAA
TGGCACGGTTTCATTATAAAACCCTCCCGTATTGTCAGCGAGCGAGTGAT
TCTCTCGATGACTGACGGGTTTGAGGAAGCTGCGGAGCACCTCGTGCGGA
AGGTCGCCGACAAACGTGTGAAATTCAAGAGTCTCTCGGAAAGCTTCCAA
AGATTATACAGCGCAGACAACTGGTGGAGAAAAAAGTCTCTCTTTCTTCA
TTTACACAATAGTCTGGTTAATTTAGGAAGAAGTCAATGCCACAAAGAGG
ACGGTAGTTCAGAACAGAAGCCAGGTTTGCAAATGCTCCCTTCTAGCATG
GCAGCGTTGGTCAAGCTTAAGATCATTTTGCTTCGATGGCACTCTTGCGT
TCCATCAATATGGGTTGCATCCCCGATAAGCAACCTAGTGTTCTGCGACA
ATATGACCATTAACGAAACCGAAGTTGTTTCGTGGTACTATGTGTCGGCC
ATTTCCATTGGAAACCGCGAAAGAAGGCACTACTATCTTGAAGTGGCTCC
AGATGAAACGGTTCGACTGTGGTTCAGACGCCGTGAGTGGGTAACAGCAA
TACAGTTCACCGCTGACAAGTCCTTCTCGACGAGTGTGCCGAGGTCGGTA
CTCCACGCAGTAGATGAACTGATGGAGGAACTAGCCAGAAGCCACAGAAA
ACCCGAGGATGCGTAA

Coding sequence (CDS) from alignment at NODE_489_length_23951_cov_4.549455:12800..13615-

>Gcaud10065.t1 ID=Gcaud10065.t1|Name=Gcaud10065.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=816bp|location=Sequence derived from alignment at NODE_489_length_23951_cov_4.549455:12800..13615- (Gracilaria caudata M_176_S67 male)
ATGTCATCAGCTGTTTTCAAGCCGTACTATGCGGACCCTTTTGCAGATCT
TGAACCCGACAGTACTAAAGAGGATTCAAAAGCGACCTTTATCAGTTGCG
AAGACAGCACAATGATGGTCGCTAAGCTAGTCGAACAAGACGCGAAAGAA
TGGCACGGTTTCATTATAAAACCCTCCCGTATTGTCAGCGAGCGAGTGAT
TCTCTCGATGACTGACGGGTTTGAGGAAGCTGCGGAGCACCTCGTGCGGA
AGGTCGCCGACAAACGTGTGAAATTCAAGAGTCTCTCGGAAAGCTTCCAA
AGATTATACAGCGCAGACAACTGGTGGAGAAAAAAGTCTCTCTTTCTTCA
TTTACACAATAGTCTGGTTAATTTAGGAAGAAGTCAATGCCACAAAGAGG
ACGGTAGTTCAGAACAGAAGCCAGGTTTGCAAATGCTCCCTTCTAGCATG
GCAGCGTTGGTCAAGCTTAAGATCATTTTGCTTCGATGGCACTCTTGCGT
TCCATCAATATGGGTTGCATCCCCGATAAGCAACCTAGTGTTCTGCGACA
ATATGACCATTAACGAAACCGAAGTTGTTTCGTGGTACTATGTGTCGGCC
ATTTCCATTGGAAACCGCGAAAGAAGGCACTACTATCTTGAAGTGGCTCC
AGATGAAACGGTTCGACTGTGGTTCAGACGCCGTGAGTGGGTAACAGCAA
TACAGTTCACCGCTGACAAGTCCTTCTCGACGAGTGTGCCGAGGTCGGTA
CTCCACGCAGTAGATGAACTGATGGAGGAACTAGCCAGAAGCCACAGAAA
ACCCGAGGATGCGTAA