Gcaud10063.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10063.t1
Unique NameGcaud10063.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length195
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_489_length_23951_cov_4.549455contigNODE_489_length_23951_cov_4.549455:8842..9590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705980.1
Preferred namePXMP2
PFAMsMpv17_PMP22
Max annot lvl2759|Eukaryota
KEGG koko:K13347,ko:K13348
KEGG Pathwayko04146,map04146
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0006810,GO:0006811,GO:0006820,GO:0008150,GO:0015267,GO:0015711,GO:0015849,GO:0016020,GO:0016021,GO:0022803,GO:0022857,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031903,GO:0032991,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0046942,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0098588,GO:0098805
Evalue2.83e-58
EggNOG OGsKOG1944@1|root,KOG1944@2759|Eukaryota
DescriptionBelongs to the peroxisomal membrane protein PXMP2 4 family
COG categoryC
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10063Gcaud10063Gracilaria caudata M_176_S67 malegeneNODE_489_length_23951_cov_4.549455 8842..9590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10063.t1Gcaud10063.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_489_length_23951_cov_4.549455 8842..9590 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10063.t1.start1Gcaud10063.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_489_length_23951_cov_4.549455 8842..8844 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10063.t1.CDS1Gcaud10063.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_489_length_23951_cov_4.549455 8842..8949 +
Gcaud10063.t1.CDS2Gcaud10063.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_489_length_23951_cov_4.549455 9025..9140 +
Gcaud10063.t1.CDS3Gcaud10063.t1.CDS3Gracilaria caudata M_176_S67 maleCDSNODE_489_length_23951_cov_4.549455 9230..9590 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10063.t1.exon1Gcaud10063.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_489_length_23951_cov_4.549455 8842..8949 +
Gcaud10063.t1.exon2Gcaud10063.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_489_length_23951_cov_4.549455 9025..9140 +
Gcaud10063.t1.exon3Gcaud10063.t1.exon3Gracilaria caudata M_176_S67 maleexonNODE_489_length_23951_cov_4.549455 9230..9590 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10063.t1.intron1Gcaud10063.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_489_length_23951_cov_4.549455 8950..9024 +
Gcaud10063.t1.intron2Gcaud10063.t1.intron2Gracilaria caudata M_176_S67 maleintronNODE_489_length_23951_cov_4.549455 9141..9229 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10063.t1.stop1Gcaud10063.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_489_length_23951_cov_4.549455 9588..9590 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10063.t1 ID=Gcaud10063.t1|Name=Gcaud10063.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=195bp
MALLLVAPRLSLPATVLRLAWTSYLRKLQSDPLLTKSVTSALLSVVSELV
AKRLKGLPFKSSAAMHELTIGLILRGPVIHAFHNFLDGVVFKTANHTSPS
VVIAKLLIDQLLFAPVFTSLYFYLRALSEDRSVSYTTKRLKKELFAIMKS
NWMLWLPANLVNYMFVPLQLRVLFGSVVALFWNAYLMAYAAKAD*
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spliced messenger RNA

>Gcaud10063.t1 ID=Gcaud10063.t1|Name=Gcaud10063.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=585bp|location=Sequence derived from alignment at NODE_489_length_23951_cov_4.549455:8842..9590+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTTGTTGCTGGTGGCTCCGCGACTGTCGCTGCCGGCGACGGTGCT
ACGGCTGGCATGGACGTCGTATCTGCGCAAGTTGCAAAGCGATCCGTTGC
TCACCAAGTCGGTGACTTCGGCGCTTTTGTCGGTGGTTAGTGAGCTGGTG
GCGAAGCGGTTGAAGGGACTGCCTTTCAAGTCCAGTGCTGCAATGCATGA
GCTCACCATTGGTTTGATTTTGCGAGGACCAGTGATTCACGCGTTTCACA
ACTTTCTGGACGGCGTGGTGTTCAAGACAGCCAACCACACGTCGCCCTCG
GTGGTGATTGCCAAGCTATTAATCGATCAACTGCTGTTTGCTCCCGTGTT
CACGTCGCTGTACTTTTACCTTCGCGCTCTCAGCGAAGATCGCAGTGTGT
CATACACCACGAAGCGATTGAAGAAGGAGCTGTTTGCCATCATGAAGAGC
AACTGGATGCTGTGGTTACCGGCCAATCTGGTCAACTACATGTTTGTGCC
GCTGCAGCTGCGCGTACTGTTTGGAAGCGTGGTGGCGCTCTTCTGGAACG
CGTATCTGATGGCGTACGCCGCAAAGGCTGATTAA
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protein sequence of Gcaud10063.t1

>Gcaud10063.t1 ID=Gcaud10063.t1|Name=Gcaud10063.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=195bp
MALLLVAPRLSLPATVLRLAWTSYLRKLQSDPLLTKSVTSALLSVVSELV
AKRLKGLPFKSSAAMHELTIGLILRGPVIHAFHNFLDGVVFKTANHTSPS
VVIAKLLIDQLLFAPVFTSLYFYLRALSEDRSVSYTTKRLKKELFAIMKS
NWMLWLPANLVNYMFVPLQLRVLFGSVVALFWNAYLMAYAAKAD*
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mRNA from alignment at NODE_489_length_23951_cov_4.549455:8842..9590+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10063.t1 ID=Gcaud10063.t1|Name=Gcaud10063.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=749bp|location=Sequence derived from alignment at NODE_489_length_23951_cov_4.549455:8842..9590+ (Gracilaria caudata M_176_S67 male)
ATGGCGTTGTTGCTGGTGGCTCCGCGACTGTCGCTGCCGGCGACGGTGCT
ACGGCTGGCATGGACGTCGTATCTGCGCAAGTTGCAAAGCGATCCGTTGC
TCACCAAGGTACGTGATGTGTGTACGGGGCTGCGTTTTCGTTTCGTGCGG
CTGACttttttttttgttttttttttttGCTAGTCGGTGACTTCGGCGCT
TTTGTCGGTGGTTAGTGAGCTGGTGGCGAAGCGGTTGAAGGGACTGCCTT
TCAAGTCCAGTGCTGCAATGCATGAGCTCACCATTGGTTTGATTTTGCGG
TACGTGCACGCTCGTTGCTTACGCGCGCTTCTGAACCAAAGTATTAATCG
CTCGTGTTGTGTGTGTGTACGTGGTGCATGGCGCGTAGAGGACCAGTGAT
TCACGCGTTTCACAACTTTCTGGACGGCGTGGTGTTCAAGACAGCCAACC
ACACGTCGCCCTCGGTGGTGATTGCCAAGCTATTAATCGATCAACTGCTG
TTTGCTCCCGTGTTCACGTCGCTGTACTTTTACCTTCGCGCTCTCAGCGA
AGATCGCAGTGTGTCATACACCACGAAGCGATTGAAGAAGGAGCTGTTTG
CCATCATGAAGAGCAACTGGATGCTGTGGTTACCGGCCAATCTGGTCAAC
TACATGTTTGTGCCGCTGCAGCTGCGCGTACTGTTTGGAAGCGTGGTGGC
GCTCTTCTGGAACGCGTATCTGATGGCGTACGCCGCAAAGGCTGATTAA
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Coding sequence (CDS) from alignment at NODE_489_length_23951_cov_4.549455:8842..9590+

>Gcaud10063.t1 ID=Gcaud10063.t1|Name=Gcaud10063.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=585bp|location=Sequence derived from alignment at NODE_489_length_23951_cov_4.549455:8842..9590+ (Gracilaria caudata M_176_S67 male)
ATGGCGTTGTTGCTGGTGGCTCCGCGACTGTCGCTGCCGGCGACGGTGCT
ACGGCTGGCATGGACGTCGTATCTGCGCAAGTTGCAAAGCGATCCGTTGC
TCACCAAGTCGGTGACTTCGGCGCTTTTGTCGGTGGTTAGTGAGCTGGTG
GCGAAGCGGTTGAAGGGACTGCCTTTCAAGTCCAGTGCTGCAATGCATGA
GCTCACCATTGGTTTGATTTTGCGAGGACCAGTGATTCACGCGTTTCACA
ACTTTCTGGACGGCGTGGTGTTCAAGACAGCCAACCACACGTCGCCCTCG
GTGGTGATTGCCAAGCTATTAATCGATCAACTGCTGTTTGCTCCCGTGTT
CACGTCGCTGTACTTTTACCTTCGCGCTCTCAGCGAAGATCGCAGTGTGT
CATACACCACGAAGCGATTGAAGAAGGAGCTGTTTGCCATCATGAAGAGC
AACTGGATGCTGTGGTTACCGGCCAATCTGGTCAACTACATGTTTGTGCC
GCTGCAGCTGCGCGTACTGTTTGGAAGCGTGGTGGCGCTCTTCTGGAACG
CGTATCTGATGGCGTACGCCGCAAAGGCTGATTAA
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