Gcaud10053.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10053.t1
Unique Name	Gcaud10053.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	384

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_702_length_19356_cov_4.467117	contig	NODE_702_length_19356_cov_4.467117:2208..3359 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10053	Gcaud10053	Gracilaria caudata M_176_S67 male	gene	NODE_702_length_19356_cov_4.467117 2208..3359 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10053.t1.stop1	Gcaud10053.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_702_length_19356_cov_4.467117 2208..2210 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10053.t1.CDS1	Gcaud10053.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_702_length_19356_cov_4.467117 2208..3359 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10053.t1.exon1	Gcaud10053.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_702_length_19356_cov_4.467117 2208..3359 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10053.t1.start1	Gcaud10053.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_702_length_19356_cov_4.467117 3357..3359 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10053.t1	Gcaud10053.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_702_length_19356_cov_4.467117 2208..3359 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_702_length_19356_cov_4.467117:2208..3359-
coding sequence from alignment at NODE_702_length_19356_cov_4.467117:2208..3359-

mRNA sequence

>Gcaud10053.t1 ID=Gcaud10053.t1|Name=Gcaud10053.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=384bp
MTSLPGPVPQGRSDARDAGPVPQGTSGARDAASPLSSIEITVVEEALENT
IQLADATEARSLRRSRRRRFVEDRAPPAMDLETIEVGSGSMRRRPRPRGR
DASRDSSDVLDDTLPRVPRRGGALQRMAPQENESRSGSSVVEICGPRARA
RNHRVEGQGREQHEENDDGHPEQQNEEIEENVHTQQSEEPSTQSNGCAII
GYKFPTQTGYGHGCVVCKKMVHMNCVRQVVGMTINDSDDPLYCTEHYNSV
YLSRAVPEEEEAGEDRTPARNPGEGTVPENTRTPGAREGTLTANARTSAG
EGTRTENAPTPACEGTLAENSHKEQNVKKMEKALEALREIGTLRLALGNE
EKCVLDDYKEVVHEIESATSKWLTLVEKYRNTN*

spliced messenger RNA

>Gcaud10053.t1 ID=Gcaud10053.t1|Name=Gcaud10053.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1152bp|location=Sequence derived from alignment at NODE_702_length_19356_cov_4.467117:2208..3359- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTTCGTTGCCTGGCCCAGTCCCGCAAGGAAGATCTGATGCGCGCGA
TGCTGGCCCAGTCCCGCAAGGTACATCTGGTGCGCGCGATGCTGCTTCCC
CTCTTTCTTCTATTGAGATCACTGTTGTTGAAGAGGCTCTTGAGAATACT
ATCCAGCTTGCAGATGCAACGGAGGCCCGGAGTTTGCGCAGAAGCAGAAG
AAGAAGATTTGTTGAGGATCGTGCACCACCCGCTATGGACTTGGAAACTA
TCGAAGTAGGGTCAGGGTCTATGCGACGAAGACCCCGACCCCGGGGGAGA
GATGCATCCAGAGATTCATCCGATGTTTTGGACGACACACTTCCCCGTGT
TCCTCGTCGTGGAGGTGCTCTCCAACGTATGGCTCCCCAAGAGAATGAGT
CACGGTCAGGATCAAGCGTTGTTGAAATTTGTGGGCCGAGGGCCAGGGCA
CGCAATCATCGTGTAGAAGGGCAAGGGCGCGAACAACATGAAGAGAATGA
TGATGGTCATCCGGAGCAACAAAACGAGGAAATCGAGGAAAACGTGCACA
CTCAGCAAAGTGAAGAACCATCAACCCAAAGTAATGGTTGTGCGATAATA
GGCTACAAATTCCCTACTCAAACGGGTTATGGGCATGGTTGCGTTGTGTG
CAAAAAGATGGTGCATATGAATTGTGTGAGGCAGGTAGTGGGGATGACTA
TCAACGACAGTGATGACCCGCTATATTGTACGGAGCATTACAACAGTGTG
TACTTGAGTAGGGCGGTTCCGGAAGAGGAAGAAGCTGGGGAAGACCGCAC
CCCTGCACGGAACCCGGGTGAAGGAACTGTGCCTGAGAATACCCGGACCC
CTGGTGCTCGTGAAGGGACTCTGACTGCGAATGCGCGGACCTCTGCTGGT
GAAGGGACTCGGACTGAGAATGCCCCGACCCCTGCTTGTGAAGGGACTTT
GGCTGAGAATTCGCACAAAGAGCAAAATGTGAAGAAAATGGAGAAGGCAT
TGGAAGCGCTAAGGGAGATAGGGACGTTGAGGTTGGCTTTGGGAAATGAG
GAAAAATGTGTCTTGGACGACTACAAGGAAGTAGTTCATGAGATAGAGTC
TGCGACATCGAAGTGGTTAACTCTAGTAGAGAAGTATCGGAATACAAATT
GA

protein sequence of Gcaud10053.t1

>Gcaud10053.t1 ID=Gcaud10053.t1|Name=Gcaud10053.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=384bp
MTSLPGPVPQGRSDARDAGPVPQGTSGARDAASPLSSIEITVVEEALENT
IQLADATEARSLRRSRRRRFVEDRAPPAMDLETIEVGSGSMRRRPRPRGR
DASRDSSDVLDDTLPRVPRRGGALQRMAPQENESRSGSSVVEICGPRARA
RNHRVEGQGREQHEENDDGHPEQQNEEIEENVHTQQSEEPSTQSNGCAII
GYKFPTQTGYGHGCVVCKKMVHMNCVRQVVGMTINDSDDPLYCTEHYNSV
YLSRAVPEEEEAGEDRTPARNPGEGTVPENTRTPGAREGTLTANARTSAG
EGTRTENAPTPACEGTLAENSHKEQNVKKMEKALEALREIGTLRLALGNE
EKCVLDDYKEVVHEIESATSKWLTLVEKYRNTN*

mRNA from alignment at NODE_702_length_19356_cov_4.467117:2208..3359-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10053.t1 ID=Gcaud10053.t1|Name=Gcaud10053.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1152bp|location=Sequence derived from alignment at NODE_702_length_19356_cov_4.467117:2208..3359- (Gracilaria caudata M_176_S67 male)
ATGACTTCGTTGCCTGGCCCAGTCCCGCAAGGAAGATCTGATGCGCGCGA
TGCTGGCCCAGTCCCGCAAGGTACATCTGGTGCGCGCGATGCTGCTTCCC
CTCTTTCTTCTATTGAGATCACTGTTGTTGAAGAGGCTCTTGAGAATACT
ATCCAGCTTGCAGATGCAACGGAGGCCCGGAGTTTGCGCAGAAGCAGAAG
AAGAAGATTTGTTGAGGATCGTGCACCACCCGCTATGGACTTGGAAACTA
TCGAAGTAGGGTCAGGGTCTATGCGACGAAGACCCCGACCCCGGGGGAGA
GATGCATCCAGAGATTCATCCGATGTTTTGGACGACACACTTCCCCGTGT
TCCTCGTCGTGGAGGTGCTCTCCAACGTATGGCTCCCCAAGAGAATGAGT
CACGGTCAGGATCAAGCGTTGTTGAAATTTGTGGGCCGAGGGCCAGGGCA
CGCAATCATCGTGTAGAAGGGCAAGGGCGCGAACAACATGAAGAGAATGA
TGATGGTCATCCGGAGCAACAAAACGAGGAAATCGAGGAAAACGTGCACA
CTCAGCAAAGTGAAGAACCATCAACCCAAAGTAATGGTTGTGCGATAATA
GGCTACAAATTCCCTACTCAAACGGGTTATGGGCATGGTTGCGTTGTGTG
CAAAAAGATGGTGCATATGAATTGTGTGAGGCAGGTAGTGGGGATGACTA
TCAACGACAGTGATGACCCGCTATATTGTACGGAGCATTACAACAGTGTG
TACTTGAGTAGGGCGGTTCCGGAAGAGGAAGAAGCTGGGGAAGACCGCAC
CCCTGCACGGAACCCGGGTGAAGGAACTGTGCCTGAGAATACCCGGACCC
CTGGTGCTCGTGAAGGGACTCTGACTGCGAATGCGCGGACCTCTGCTGGT
GAAGGGACTCGGACTGAGAATGCCCCGACCCCTGCTTGTGAAGGGACTTT
GGCTGAGAATTCGCACAAAGAGCAAAATGTGAAGAAAATGGAGAAGGCAT
TGGAAGCGCTAAGGGAGATAGGGACGTTGAGGTTGGCTTTGGGAAATGAG
GAAAAATGTGTCTTGGACGACTACAAGGAAGTAGTTCATGAGATAGAGTC
TGCGACATCGAAGTGGTTAACTCTAGTAGAGAAGTATCGGAATACAAATT
GA

Coding sequence (CDS) from alignment at NODE_702_length_19356_cov_4.467117:2208..3359-

>Gcaud10053.t1 ID=Gcaud10053.t1|Name=Gcaud10053.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1152bp|location=Sequence derived from alignment at NODE_702_length_19356_cov_4.467117:2208..3359- (Gracilaria caudata M_176_S67 male)
ATGACTTCGTTGCCTGGCCCAGTCCCGCAAGGAAGATCTGATGCGCGCGA
TGCTGGCCCAGTCCCGCAAGGTACATCTGGTGCGCGCGATGCTGCTTCCC
CTCTTTCTTCTATTGAGATCACTGTTGTTGAAGAGGCTCTTGAGAATACT
ATCCAGCTTGCAGATGCAACGGAGGCCCGGAGTTTGCGCAGAAGCAGAAG
AAGAAGATTTGTTGAGGATCGTGCACCACCCGCTATGGACTTGGAAACTA
TCGAAGTAGGGTCAGGGTCTATGCGACGAAGACCCCGACCCCGGGGGAGA
GATGCATCCAGAGATTCATCCGATGTTTTGGACGACACACTTCCCCGTGT
TCCTCGTCGTGGAGGTGCTCTCCAACGTATGGCTCCCCAAGAGAATGAGT
CACGGTCAGGATCAAGCGTTGTTGAAATTTGTGGGCCGAGGGCCAGGGCA
CGCAATCATCGTGTAGAAGGGCAAGGGCGCGAACAACATGAAGAGAATGA
TGATGGTCATCCGGAGCAACAAAACGAGGAAATCGAGGAAAACGTGCACA
CTCAGCAAAGTGAAGAACCATCAACCCAAAGTAATGGTTGTGCGATAATA
GGCTACAAATTCCCTACTCAAACGGGTTATGGGCATGGTTGCGTTGTGTG
CAAAAAGATGGTGCATATGAATTGTGTGAGGCAGGTAGTGGGGATGACTA
TCAACGACAGTGATGACCCGCTATATTGTACGGAGCATTACAACAGTGTG
TACTTGAGTAGGGCGGTTCCGGAAGAGGAAGAAGCTGGGGAAGACCGCAC
CCCTGCACGGAACCCGGGTGAAGGAACTGTGCCTGAGAATACCCGGACCC
CTGGTGCTCGTGAAGGGACTCTGACTGCGAATGCGCGGACCTCTGCTGGT
GAAGGGACTCGGACTGAGAATGCCCCGACCCCTGCTTGTGAAGGGACTTT
GGCTGAGAATTCGCACAAAGAGCAAAATGTGAAGAAAATGGAGAAGGCAT
TGGAAGCGCTAAGGGAGATAGGGACGTTGAGGTTGGCTTTGGGAAATGAG
GAAAAATGTGTCTTGGACGACTACAAGGAAGTAGTTCATGAGATAGAGTC
TGCGACATCGAAGTGGTTAACTCTAGTAGAGAAGTATCGGAATACAAATT
GA