Gcaud10046.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10046.t1
Unique Name	Gcaud10046.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	462

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_369_length_28483_cov_4.246936	contig	NODE_369_length_28483_cov_4.246936:5062..6447 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703854.1
Preferred name	RBM39
PFAMs	RBM39linker,RRM_1
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K13091
GOs	GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0003674,GO:0003676,GO:0003712,GO:0003713,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005815,GO:0005856,GO:0006139,GO:0006351,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0015630,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0043021,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045292,GO:0045935,GO:0046483,GO:0048024,GO:0048518,GO:0048522,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065007,GO:0070013,GO:0070990,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1990446,GO:1990904,GO:2001141
Evalue	6.6e-51
EggNOG OGs	KOG0147@1\|root,KOG0147@2759\|Eukaryota
Description	mRNA processing
COG category	S
BRITE	ko00000,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10046	Gcaud10046	Gracilaria caudata M_176_S67 male	gene	NODE_369_length_28483_cov_4.246936 5062..6447 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10046.t1.start1	Gcaud10046.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_369_length_28483_cov_4.246936 5062..5064 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10046.t1.CDS1	Gcaud10046.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_369_length_28483_cov_4.246936 5062..6447 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10046.t1.exon1	Gcaud10046.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_369_length_28483_cov_4.246936 5062..6447 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10046.t1.stop1	Gcaud10046.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_369_length_28483_cov_4.246936 6445..6447 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10046.t1	Gcaud10046.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_369_length_28483_cov_4.246936 5062..6447 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_369_length_28483_cov_4.246936:5062..6447+
coding sequence from alignment at NODE_369_length_28483_cov_4.246936:5062..6447+

mRNA sequence

>Gcaud10046.t1 ID=Gcaud10046.t1|Name=Gcaud10046.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=462bp
LAKRVSAEHVFDLFSEAGRVRDVRLVMDRYSSRHKSAGYVEFYEQRAVER
ALNMNGINLCGVPVAIRRIAPPVAATAAASRIAGGDGDMHARERRARARA
HERGYEGGGTTVPSSNSIGWSTRRPIRAVDNQGAFGAPRSTLSAPGRELV
SIEELKRLLNPNKLPVAGVKTPLDSHHLGAQSGAPANGAEVGGHGGGANG
AHRRVYVGSIAYHVNESELRAVFEAYGAIQSVQLQREANGRSKGFAFVEF
VSAEDSRKALETNGVVVGGKALTVALAGQAHSRSGEGAGVAHGAPVGGGG
GGGGVVDRVPLPLVDVAGEIDEGREGGVAMNNAQRVMLMQQLSRGETMGN
KLRGDVQKLPSCARQTRSVVLCNMFDPANEEAGFEKELLEEVRDECVGKY
GKVVHLHVEIESHGIVYLRFGAVQEAVRAQNDLNGRWFGGKKIVAAFVDD
AQYSTRFPNGG*

spliced messenger RNA

>Gcaud10046.t1 ID=Gcaud10046.t1|Name=Gcaud10046.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1386bp|location=Sequence derived from alignment at NODE_369_length_28483_cov_4.246936:5062..6447+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
CTGGCGAAGAGAGTGAGTGCTGAACATGTGTTTGATTTGTTCTCCGAAGC
CGGACGCGTTCGAGATGTGCGACTGGTGATGGATCGCTACTCCAGTCGAC
ACAAGAGCGCCGGTTACGTGGAGTTTTACGAGCAACGAGCGGTGGAACGA
GCGCTCAACATGAACGGGATCAATCTGTGCGGCGTTCCTGTTGCCATTCG
TCGCATCGCGCCGCCCGTGGCTGCCACTGCTGCCGCCAGTCGTATcgcgg
gcggcgacggcgacatgcatgcgcgcgagcgtcgcgcgcgtgcgcgcgcg
cacgAACGAGGTTATGAGGGCGGTGGTACGACGGTGCCGAGTTCCAATTC
GATTGGATGGTCTACTCGACGACCGATTCGAGCGGTGGACAATCAGGGCG
CGTTTGGCGCGCCGCGGAGTACATTATCGGCGCCGGGACGAGAACTGGTG
TCCATCGAGGAGTTGAAGCGGCTGTTGAACCCGAACAAGCTGCCTGTGGC
GGGCGTGAAGACGCCGTTGGACAGCCACCATCTGGGCGCGCAAAGCGGAG
CGCCCGCAAACGGCGCGGAAGTGGGCGGCCATGGCGGCGGCGCGAACGGG
GCACACCGTCGTGTGTACGTGGGTTCTATTGCGTACCATGTGAATGAATC
GGAACTGCGCGCGGTTTTTGAGGCGTATGGGGCGATTCAATCGGTGCAGC
TGCAACGGGAGGCGAATGGAAGATCGAAGGGGTTTGCGTTTGTGGAGTTT
GTGAGCGCAGAGGACTCGAGAAAGGCGCTGGAGACCAATGGAGTGGTGGT
GGGTGGAAAGGCGCTGACGGTGGCGTTGGCTGGACAGGCGCATTCGCGGA
GCGGCGAGGGAGCGGGCGTCGCGCATGGCGCGCCTGTGggaggcggcggc
ggcggcggtggcgTGGTGGATCGTGTGCCGCTGCCGCTGGTGGACGTGGC
CGGAGAAATTGACGAGGGACGTGAGGGAGGTGTGGCCATGAACAACGCGC
AGCGCGTGATGCTGATGCAACAGCTGTCGCGCGGCGAGACAATGGGAAAC
AAACTGAGAGGCGACGTGCAAAAGCTGCCGAGCTGCGCGCGACAGACGCG
CTCGGTGGTGCTGTGCAACATGTTTGACCCGGCCAACGAGGAAGCGGGCT
TCGAGAAGGAGCTGTTGGAGGAGGTACGCGACGAGTGTGTGGGCAAGTAT
GGCAAGGTGGTGCATCTGCACGTGGAGATCGAGTCGCATGGCATTGTTTA
CTTGCGCTTCGGCGCGGTGCAGGAGGCGGTGCGCGCGCAGAACGACCTGA
ACGGGCGCTGGTTTGGCGGCAAGAAGATCGTGGCGGCGTTTGTAGACGAC
GCGCAGTACAGCACGCGCTTCCCCAACGGCGGGTAA

protein sequence of Gcaud10046.t1

>Gcaud10046.t1 ID=Gcaud10046.t1|Name=Gcaud10046.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=462bp
LAKRVSAEHVFDLFSEAGRVRDVRLVMDRYSSRHKSAGYVEFYEQRAVER
ALNMNGINLCGVPVAIRRIAPPVAATAAASRIAGGDGDMHARERRARARA
HERGYEGGGTTVPSSNSIGWSTRRPIRAVDNQGAFGAPRSTLSAPGRELV
SIEELKRLLNPNKLPVAGVKTPLDSHHLGAQSGAPANGAEVGGHGGGANG
AHRRVYVGSIAYHVNESELRAVFEAYGAIQSVQLQREANGRSKGFAFVEF
VSAEDSRKALETNGVVVGGKALTVALAGQAHSRSGEGAGVAHGAPVGGGG
GGGGVVDRVPLPLVDVAGEIDEGREGGVAMNNAQRVMLMQQLSRGETMGN
KLRGDVQKLPSCARQTRSVVLCNMFDPANEEAGFEKELLEEVRDECVGKY
GKVVHLHVEIESHGIVYLRFGAVQEAVRAQNDLNGRWFGGKKIVAAFVDD
AQYSTRFPNGG*

mRNA from alignment at NODE_369_length_28483_cov_4.246936:5062..6447+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10046.t1 ID=Gcaud10046.t1|Name=Gcaud10046.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1386bp|location=Sequence derived from alignment at NODE_369_length_28483_cov_4.246936:5062..6447+ (Gracilaria caudata M_176_S67 male)
CTGGCGAAGAGAGTGAGTGCTGAACATGTGTTTGATTTGTTCTCCGAAGC
CGGACGCGTTCGAGATGTGCGACTGGTGATGGATCGCTACTCCAGTCGAC
ACAAGAGCGCCGGTTACGTGGAGTTTTACGAGCAACGAGCGGTGGAACGA
GCGCTCAACATGAACGGGATCAATCTGTGCGGCGTTCCTGTTGCCATTCG
TCGCATCGCGCCGCCCGTGGCTGCCACTGCTGCCGCCAGTCGTATcgcgg
gcggcgacggcgacatgcatgcgcgcgagcgtcgcgcgcgtgcgcgcgcg
cacgAACGAGGTTATGAGGGCGGTGGTACGACGGTGCCGAGTTCCAATTC
GATTGGATGGTCTACTCGACGACCGATTCGAGCGGTGGACAATCAGGGCG
CGTTTGGCGCGCCGCGGAGTACATTATCGGCGCCGGGACGAGAACTGGTG
TCCATCGAGGAGTTGAAGCGGCTGTTGAACCCGAACAAGCTGCCTGTGGC
GGGCGTGAAGACGCCGTTGGACAGCCACCATCTGGGCGCGCAAAGCGGAG
CGCCCGCAAACGGCGCGGAAGTGGGCGGCCATGGCGGCGGCGCGAACGGG
GCACACCGTCGTGTGTACGTGGGTTCTATTGCGTACCATGTGAATGAATC
GGAACTGCGCGCGGTTTTTGAGGCGTATGGGGCGATTCAATCGGTGCAGC
TGCAACGGGAGGCGAATGGAAGATCGAAGGGGTTTGCGTTTGTGGAGTTT
GTGAGCGCAGAGGACTCGAGAAAGGCGCTGGAGACCAATGGAGTGGTGGT
GGGTGGAAAGGCGCTGACGGTGGCGTTGGCTGGACAGGCGCATTCGCGGA
GCGGCGAGGGAGCGGGCGTCGCGCATGGCGCGCCTGTGggaggcggcggc
ggcggcggtggcgTGGTGGATCGTGTGCCGCTGCCGCTGGTGGACGTGGC
CGGAGAAATTGACGAGGGACGTGAGGGAGGTGTGGCCATGAACAACGCGC
AGCGCGTGATGCTGATGCAACAGCTGTCGCGCGGCGAGACAATGGGAAAC
AAACTGAGAGGCGACGTGCAAAAGCTGCCGAGCTGCGCGCGACAGACGCG
CTCGGTGGTGCTGTGCAACATGTTTGACCCGGCCAACGAGGAAGCGGGCT
TCGAGAAGGAGCTGTTGGAGGAGGTACGCGACGAGTGTGTGGGCAAGTAT
GGCAAGGTGGTGCATCTGCACGTGGAGATCGAGTCGCATGGCATTGTTTA
CTTGCGCTTCGGCGCGGTGCAGGAGGCGGTGCGCGCGCAGAACGACCTGA
ACGGGCGCTGGTTTGGCGGCAAGAAGATCGTGGCGGCGTTTGTAGACGAC
GCGCAGTACAGCACGCGCTTCCCCAACGGCGGGTAA

Coding sequence (CDS) from alignment at NODE_369_length_28483_cov_4.246936:5062..6447+

>Gcaud10046.t1 ID=Gcaud10046.t1|Name=Gcaud10046.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1386bp|location=Sequence derived from alignment at NODE_369_length_28483_cov_4.246936:5062..6447+ (Gracilaria caudata M_176_S67 male)
CTGGCGAAGAGAGTGAGTGCTGAACATGTGTTTGATTTGTTCTCCGAAGC
CGGACGCGTTCGAGATGTGCGACTGGTGATGGATCGCTACTCCAGTCGAC
ACAAGAGCGCCGGTTACGTGGAGTTTTACGAGCAACGAGCGGTGGAACGA
GCGCTCAACATGAACGGGATCAATCTGTGCGGCGTTCCTGTTGCCATTCG
TCGCATCGCGCCGCCCGTGGCTGCCACTGCTGCCGCCAGTCGTATcgcgg
gcggcgacggcgacatgcatgcgcgcgagcgtcgcgcgcgtgcgcgcgcg
cacgAACGAGGTTATGAGGGCGGTGGTACGACGGTGCCGAGTTCCAATTC
GATTGGATGGTCTACTCGACGACCGATTCGAGCGGTGGACAATCAGGGCG
CGTTTGGCGCGCCGCGGAGTACATTATCGGCGCCGGGACGAGAACTGGTG
TCCATCGAGGAGTTGAAGCGGCTGTTGAACCCGAACAAGCTGCCTGTGGC
GGGCGTGAAGACGCCGTTGGACAGCCACCATCTGGGCGCGCAAAGCGGAG
CGCCCGCAAACGGCGCGGAAGTGGGCGGCCATGGCGGCGGCGCGAACGGG
GCACACCGTCGTGTGTACGTGGGTTCTATTGCGTACCATGTGAATGAATC
GGAACTGCGCGCGGTTTTTGAGGCGTATGGGGCGATTCAATCGGTGCAGC
TGCAACGGGAGGCGAATGGAAGATCGAAGGGGTTTGCGTTTGTGGAGTTT
GTGAGCGCAGAGGACTCGAGAAAGGCGCTGGAGACCAATGGAGTGGTGGT
GGGTGGAAAGGCGCTGACGGTGGCGTTGGCTGGACAGGCGCATTCGCGGA
GCGGCGAGGGAGCGGGCGTCGCGCATGGCGCGCCTGTGggaggcggcggc
ggcggcggtggcgTGGTGGATCGTGTGCCGCTGCCGCTGGTGGACGTGGC
CGGAGAAATTGACGAGGGACGTGAGGGAGGTGTGGCCATGAACAACGCGC
AGCGCGTGATGCTGATGCAACAGCTGTCGCGCGGCGAGACAATGGGAAAC
AAACTGAGAGGCGACGTGCAAAAGCTGCCGAGCTGCGCGCGACAGACGCG
CTCGGTGGTGCTGTGCAACATGTTTGACCCGGCCAACGAGGAAGCGGGCT
TCGAGAAGGAGCTGTTGGAGGAGGTACGCGACGAGTGTGTGGGCAAGTAT
GGCAAGGTGGTGCATCTGCACGTGGAGATCGAGTCGCATGGCATTGTTTA
CTTGCGCTTCGGCGCGGTGCAGGAGGCGGTGCGCGCGCAGAACGACCTGA
ACGGGCGCTGGTTTGGCGGCAAGAAGATCGTGGCGGCGTTTGTAGACGAC
GCGCAGTACAGCACGCGCTTCCCCAACGGCGGGTAA