Gcaud10044.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10044.t1
Unique Name	Gcaud10044.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	582

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_369_length_28483_cov_4.246936	contig	NODE_369_length_28483_cov_4.246936:220..1965 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	5888.CAK64108
PFAMs	EF-hand_1,EF-hand_5,EF-hand_7,Pkinase
Max annot lvl	5878\|Ciliophora
KEGG ko	ko:K13412
KEGG Pathway	ko04626,ko05145,map04626,map05145
Evalue	6.86e-41
EggNOG OGs	KOG0032@1\|root,KOG0032@2759\|Eukaryota,3ZB73@5878\|Ciliophora
EC	2.7.11.1
Description	EF-hand domain pair
COG category	T
BRITE	ko00000,ko00001,ko01000,ko01001

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10044	Gcaud10044	Gracilaria caudata M_176_S67 male	gene	NODE_369_length_28483_cov_4.246936 220..1965 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10044.t1.start1	Gcaud10044.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_369_length_28483_cov_4.246936 220..222 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10044.t1.CDS1	Gcaud10044.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_369_length_28483_cov_4.246936 220..1965 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10044.t1.exon1	Gcaud10044.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_369_length_28483_cov_4.246936 220..1965 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10044.t1.stop1	Gcaud10044.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_369_length_28483_cov_4.246936 1963..1965 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10044.t1	Gcaud10044.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_369_length_28483_cov_4.246936 220..1965 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_369_length_28483_cov_4.246936:220..1965+
coding sequence from alignment at NODE_369_length_28483_cov_4.246936:220..1965+

mRNA sequence

>Gcaud10044.t1 ID=Gcaud10044.t1|Name=Gcaud10044.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=582bp
MHSPPPHPDQSHLTRASNDFQQLRPSRRLSVSPLQPQPLPSPLPTQLSSE
TTPEIHSPPAADSDSSLPFTMSSTRRKNDRHFSPSASESRPTNPTIPSLS
DRIGRRDHATRAQIAKRLRGASPISSSSISSLTELAASQQSSVSPTNNTL
AFGRHRRRASESVVPTTYLSPHKRQQQINSAPMPVQTKRCPLALDHFSLN
KMLGSGGTATVFRAEVVPSSLAASYIPTKELALKAVSKKGLTRRAQHYLA
REIAIHRNLQHPNIAALYEVFEDSAGIYLAMELLRGNDLYTALKRERRGF
PEALALQICAQVLDALRYMHSLGYAHRDVKPENIMFTEKPFYVDGKLAPI
KLIDFGLASARDPNAPDKEKLSSEKCGTVRYAAPEIVTETAYVPELCDMW
SVGIVLYSIIAHRNPYTGRTEREVLHQIANTPLSFNTPEWERVSNDTKQF
ICSCLSLKPSDRPNATRALEEVNRIMDVLAEKQVGDTFASKDHHTDMRYS
GKRGRHDMFREDVSGFSSHVTPDAGASNSRRRDGSTTGDANDTSPSNSGD
GSGHPTNFLDGLLAWFSGGSTPERNGSDSPQ*

spliced messenger RNA

>Gcaud10044.t1 ID=Gcaud10044.t1|Name=Gcaud10044.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1746bp|location=Sequence derived from alignment at NODE_369_length_28483_cov_4.246936:220..1965+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACTCGCCTCCGCCTCACCCGGACCAGAGCCACCTAACTCGAGCTTC
TAACGACTTCCAACAATTGCGTCCAAGCCGTCGACTCTCCGTCTCTCCAC
TCCAACCGCAACCTCTGCCGTCGCCGCTACCTACTCAATTATCGTCCGAA
ACCACCCCTGAAATTCATTCCCCGCCCGCCGCTGACTCCGATTCCTCTCT
GCCGTTCACAATGTCATCCACGCGCCGAAAAAACGACCGCCATTTCAGCC
CCTCCGCCTCAGAGTCCAGACCCACCAATCCTACTATCCCGTCGTTGTCG
GACCGAATCGGGCGCCGTGACCATGCCACCCGCGCTCAGATTGCCAAGCG
CTTGCGCGGCGCCTCTCCTATTTCGTCATCCTCCATTTCGTCACTCACGG
AGCTTGCTGCATCACAACAGTCTTCTGTCAGCCCTACGAACAATACGCTC
GCATTTGGACGCCACCGCCGGCGCGCCTCCGAGTCTGTCGTCCCCACCAC
ATACCTCTCTCCTCACAAACGTCAACAACAAATTAACTCCGCTCCGATGC
CGGTGCAAACCAAACGCTGTCCGCTTGCGCTTGACCACTTTTCCCTTAAC
AAAATGCTCGGCTCGGGCGGAACAGCCACTGTGTTTCGCGCCGAGGTTGT
TCCTTCTTCGCTCGCCGCATCCTACATTCCTACCAAGGAGCTTGCGCTCA
AGGCCGTGTCGAAAAAGGGCTTAACCCGTCGTGCTCAACATTACCTGGCG
AGGGAGATTGCAATTCATCGTAACTTGCAACATCCTAACATTGCTGCCTT
GTACGAGGTGTTCGAGGATTCGGCTGGCATTTACCTTGCAATGGAGTTGT
TGCGAGGGAATGATTTGTACACTGCTCTTAAGAGAGAGCGACGAGGCTTT
CCAGAGGCTCTTGCCTTGCAAATATGCGCTCAAGTACTCGACGCTTTGCG
CTACATGCATTCGCTTGGCTACGCCCACCGCGACGTCAAGCCAGAGAACA
TTATGTTCACGGAAAAGCCTTTCTACGTTGATGGCAAACTGGCGCCCATC
AAGCTCATTGACTTTGGCTTGGCTAGTGCTCGAGACCCCAATGCTCCTGA
TAAGGAGAAACTCAGCTCTGAAAAGTGCGGCACTGTGCGATATGCCGCCC
CGGAAATTGTGACCGAGACAGCGTATGTTCCAGAGCTGTGCGATATGTGG
AGCGTCGGTATTGTCCTATATTCCATTATCGCTCATCGAAACCCGTACAC
CGGACGTACGGAGAGAGAAGTGTTGCATCAGATTGCAAACACGCCGCTTT
CGTTCAATACCCCCGAGTGGGAGCGAGTCTCTAATGACACCAAGCAATTC
ATTTGCTCTTGCCTTTCTCTGAAACCTTCCGACAGACCGAATGCTACCCG
GGCATTGGAAGAGGTGAATCGCATTATGGACGTACTCGCTGAAAAGCAGG
TGGGTGATACGTTCGCAAGCAAGGATCATCACACTGATATGCGTTACTCT
GGGAAGAGAGGCCGACATGATATGTTCCGAGAGGATGTCTCTGGCTTTTC
CAGCCATGTCACTCCGGATGCCGGCGCAAGCAATAGTCGCCGTCGTGATG
GGAGCACTACTGGCGATGCAAATGATACGTCCCCGAGTAACAGCGGTGAC
GGAAGTGGCCATCCTACAAACTTTCTGGATGGTCTCCTTGCTTGGTTCAG
TGGTGGATCTACACCAGAACGAAACGGTTCGGACAGTCCGCAGTAG

protein sequence of Gcaud10044.t1

>Gcaud10044.t1 ID=Gcaud10044.t1|Name=Gcaud10044.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=582bp
MHSPPPHPDQSHLTRASNDFQQLRPSRRLSVSPLQPQPLPSPLPTQLSSE
TTPEIHSPPAADSDSSLPFTMSSTRRKNDRHFSPSASESRPTNPTIPSLS
DRIGRRDHATRAQIAKRLRGASPISSSSISSLTELAASQQSSVSPTNNTL
AFGRHRRRASESVVPTTYLSPHKRQQQINSAPMPVQTKRCPLALDHFSLN
KMLGSGGTATVFRAEVVPSSLAASYIPTKELALKAVSKKGLTRRAQHYLA
REIAIHRNLQHPNIAALYEVFEDSAGIYLAMELLRGNDLYTALKRERRGF
PEALALQICAQVLDALRYMHSLGYAHRDVKPENIMFTEKPFYVDGKLAPI
KLIDFGLASARDPNAPDKEKLSSEKCGTVRYAAPEIVTETAYVPELCDMW
SVGIVLYSIIAHRNPYTGRTEREVLHQIANTPLSFNTPEWERVSNDTKQF
ICSCLSLKPSDRPNATRALEEVNRIMDVLAEKQVGDTFASKDHHTDMRYS
GKRGRHDMFREDVSGFSSHVTPDAGASNSRRRDGSTTGDANDTSPSNSGD
GSGHPTNFLDGLLAWFSGGSTPERNGSDSPQ*

mRNA from alignment at NODE_369_length_28483_cov_4.246936:220..1965+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10044.t1 ID=Gcaud10044.t1|Name=Gcaud10044.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1746bp|location=Sequence derived from alignment at NODE_369_length_28483_cov_4.246936:220..1965+ (Gracilaria caudata M_176_S67 male)
ATGCACTCGCCTCCGCCTCACCCGGACCAGAGCCACCTAACTCGAGCTTC
TAACGACTTCCAACAATTGCGTCCAAGCCGTCGACTCTCCGTCTCTCCAC
TCCAACCGCAACCTCTGCCGTCGCCGCTACCTACTCAATTATCGTCCGAA
ACCACCCCTGAAATTCATTCCCCGCCCGCCGCTGACTCCGATTCCTCTCT
GCCGTTCACAATGTCATCCACGCGCCGAAAAAACGACCGCCATTTCAGCC
CCTCCGCCTCAGAGTCCAGACCCACCAATCCTACTATCCCGTCGTTGTCG
GACCGAATCGGGCGCCGTGACCATGCCACCCGCGCTCAGATTGCCAAGCG
CTTGCGCGGCGCCTCTCCTATTTCGTCATCCTCCATTTCGTCACTCACGG
AGCTTGCTGCATCACAACAGTCTTCTGTCAGCCCTACGAACAATACGCTC
GCATTTGGACGCCACCGCCGGCGCGCCTCCGAGTCTGTCGTCCCCACCAC
ATACCTCTCTCCTCACAAACGTCAACAACAAATTAACTCCGCTCCGATGC
CGGTGCAAACCAAACGCTGTCCGCTTGCGCTTGACCACTTTTCCCTTAAC
AAAATGCTCGGCTCGGGCGGAACAGCCACTGTGTTTCGCGCCGAGGTTGT
TCCTTCTTCGCTCGCCGCATCCTACATTCCTACCAAGGAGCTTGCGCTCA
AGGCCGTGTCGAAAAAGGGCTTAACCCGTCGTGCTCAACATTACCTGGCG
AGGGAGATTGCAATTCATCGTAACTTGCAACATCCTAACATTGCTGCCTT
GTACGAGGTGTTCGAGGATTCGGCTGGCATTTACCTTGCAATGGAGTTGT
TGCGAGGGAATGATTTGTACACTGCTCTTAAGAGAGAGCGACGAGGCTTT
CCAGAGGCTCTTGCCTTGCAAATATGCGCTCAAGTACTCGACGCTTTGCG
CTACATGCATTCGCTTGGCTACGCCCACCGCGACGTCAAGCCAGAGAACA
TTATGTTCACGGAAAAGCCTTTCTACGTTGATGGCAAACTGGCGCCCATC
AAGCTCATTGACTTTGGCTTGGCTAGTGCTCGAGACCCCAATGCTCCTGA
TAAGGAGAAACTCAGCTCTGAAAAGTGCGGCACTGTGCGATATGCCGCCC
CGGAAATTGTGACCGAGACAGCGTATGTTCCAGAGCTGTGCGATATGTGG
AGCGTCGGTATTGTCCTATATTCCATTATCGCTCATCGAAACCCGTACAC
CGGACGTACGGAGAGAGAAGTGTTGCATCAGATTGCAAACACGCCGCTTT
CGTTCAATACCCCCGAGTGGGAGCGAGTCTCTAATGACACCAAGCAATTC
ATTTGCTCTTGCCTTTCTCTGAAACCTTCCGACAGACCGAATGCTACCCG
GGCATTGGAAGAGGTGAATCGCATTATGGACGTACTCGCTGAAAAGCAGG
TGGGTGATACGTTCGCAAGCAAGGATCATCACACTGATATGCGTTACTCT
GGGAAGAGAGGCCGACATGATATGTTCCGAGAGGATGTCTCTGGCTTTTC
CAGCCATGTCACTCCGGATGCCGGCGCAAGCAATAGTCGCCGTCGTGATG
GGAGCACTACTGGCGATGCAAATGATACGTCCCCGAGTAACAGCGGTGAC
GGAAGTGGCCATCCTACAAACTTTCTGGATGGTCTCCTTGCTTGGTTCAG
TGGTGGATCTACACCAGAACGAAACGGTTCGGACAGTCCGCAGTAG

Coding sequence (CDS) from alignment at NODE_369_length_28483_cov_4.246936:220..1965+

>Gcaud10044.t1 ID=Gcaud10044.t1|Name=Gcaud10044.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1746bp|location=Sequence derived from alignment at NODE_369_length_28483_cov_4.246936:220..1965+ (Gracilaria caudata M_176_S67 male)
ATGCACTCGCCTCCGCCTCACCCGGACCAGAGCCACCTAACTCGAGCTTC
TAACGACTTCCAACAATTGCGTCCAAGCCGTCGACTCTCCGTCTCTCCAC
TCCAACCGCAACCTCTGCCGTCGCCGCTACCTACTCAATTATCGTCCGAA
ACCACCCCTGAAATTCATTCCCCGCCCGCCGCTGACTCCGATTCCTCTCT
GCCGTTCACAATGTCATCCACGCGCCGAAAAAACGACCGCCATTTCAGCC
CCTCCGCCTCAGAGTCCAGACCCACCAATCCTACTATCCCGTCGTTGTCG
GACCGAATCGGGCGCCGTGACCATGCCACCCGCGCTCAGATTGCCAAGCG
CTTGCGCGGCGCCTCTCCTATTTCGTCATCCTCCATTTCGTCACTCACGG
AGCTTGCTGCATCACAACAGTCTTCTGTCAGCCCTACGAACAATACGCTC
GCATTTGGACGCCACCGCCGGCGCGCCTCCGAGTCTGTCGTCCCCACCAC
ATACCTCTCTCCTCACAAACGTCAACAACAAATTAACTCCGCTCCGATGC
CGGTGCAAACCAAACGCTGTCCGCTTGCGCTTGACCACTTTTCCCTTAAC
AAAATGCTCGGCTCGGGCGGAACAGCCACTGTGTTTCGCGCCGAGGTTGT
TCCTTCTTCGCTCGCCGCATCCTACATTCCTACCAAGGAGCTTGCGCTCA
AGGCCGTGTCGAAAAAGGGCTTAACCCGTCGTGCTCAACATTACCTGGCG
AGGGAGATTGCAATTCATCGTAACTTGCAACATCCTAACATTGCTGCCTT
GTACGAGGTGTTCGAGGATTCGGCTGGCATTTACCTTGCAATGGAGTTGT
TGCGAGGGAATGATTTGTACACTGCTCTTAAGAGAGAGCGACGAGGCTTT
CCAGAGGCTCTTGCCTTGCAAATATGCGCTCAAGTACTCGACGCTTTGCG
CTACATGCATTCGCTTGGCTACGCCCACCGCGACGTCAAGCCAGAGAACA
TTATGTTCACGGAAAAGCCTTTCTACGTTGATGGCAAACTGGCGCCCATC
AAGCTCATTGACTTTGGCTTGGCTAGTGCTCGAGACCCCAATGCTCCTGA
TAAGGAGAAACTCAGCTCTGAAAAGTGCGGCACTGTGCGATATGCCGCCC
CGGAAATTGTGACCGAGACAGCGTATGTTCCAGAGCTGTGCGATATGTGG
AGCGTCGGTATTGTCCTATATTCCATTATCGCTCATCGAAACCCGTACAC
CGGACGTACGGAGAGAGAAGTGTTGCATCAGATTGCAAACACGCCGCTTT
CGTTCAATACCCCCGAGTGGGAGCGAGTCTCTAATGACACCAAGCAATTC
ATTTGCTCTTGCCTTTCTCTGAAACCTTCCGACAGACCGAATGCTACCCG
GGCATTGGAAGAGGTGAATCGCATTATGGACGTACTCGCTGAAAAGCAGG
TGGGTGATACGTTCGCAAGCAAGGATCATCACACTGATATGCGTTACTCT
GGGAAGAGAGGCCGACATGATATGTTCCGAGAGGATGTCTCTGGCTTTTC
CAGCCATGTCACTCCGGATGCCGGCGCAAGCAATAGTCGCCGTCGTGATG
GGAGCACTACTGGCGATGCAAATGATACGTCCCCGAGTAACAGCGGTGAC
GGAAGTGGCCATCCTACAAACTTTCTGGATGGTCTCCTTGCTTGGTTCAG
TGGTGGATCTACACCAGAACGAAACGGTTCGGACAGTCCGCAGTAG