Gcaud10041.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10041.t1
Unique NameGcaud10041.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length548
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_32_length_72862_cov_4.436877contigNODE_32_length_72862_cov_4.436877:69229..70872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7165.AGAP000184-PB
Preferred nameME1
PFAMsMalic_M,malic
Max annot lvl33208|Metazoa
KEGG rclassRC00105
KEGG koko:K00027,ko:K00029
KEGG ReactionR00214,R00216
KEGG Pathwayko00620,ko00710,ko01100,ko01120,ko01200,ko02020,map00620,map00710,map01100,map01120,map01200,map02020
KEGG ModuleM00169,M00172
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004470,GO:0004471,GO:0004473,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005975,GO:0006082,GO:0006090,GO:0006091,GO:0006099,GO:0006101,GO:0006108,GO:0006139,GO:0006140,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006741,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0009055,GO:0009058,GO:0009060,GO:0009108,GO:0009117,GO:0009165,GO:0009719,GO:0009725,GO:0009743,GO:0009987,GO:0010033,GO:0010259,GO:0010941,GO:0015980,GO:0016043,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017076,GO:0017144,GO:0018130,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019752,GO:0022607,GO:0022900,GO:0030145,GO:0030431,GO:0030554,GO:0031323,GO:0031974,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0034641,GO:0034654,GO:0036094,GO:0042221,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043531,GO:0043648,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046483,GO:0046496,GO:0046872,GO:0046914,GO:0048037,GO:0048856,GO:0050661,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051174,GO:0051186,GO:0051188,GO:0051193,GO:0051196,GO:0051259,GO:0051262,GO:0051287,GO:0055086,GO:0055114,GO:0062012,GO:0065003,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0072350,GO:0072524,GO:0072525,GO:0072592,GO:0080090,GO:0090407,GO:0097159,GO:0097367,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1902031
Evalue1.18e-173
EggNOG OGsCOG0281@1|root,KOG1257@2759|Eukaryota,38DJY@33154|Opisthokonta,3BA84@33208|Metazoa,3CSHT@33213|Bilateria,41VHQ@6656|Arthropoda,3SKJ7@50557|Insecta,450CX@7147|Diptera,45H3U@7148|Nematocera
EC1.1.1.38,1.1.1.40
DescriptionMalic enzyme, NAD binding domain
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10041Gcaud10041Gracilaria caudata M_176_S67 malegeneNODE_32_length_72862_cov_4.436877 69229..70872 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10041.t1.stop1Gcaud10041.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_32_length_72862_cov_4.436877 69229..69231 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10041.t1.CDS1Gcaud10041.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_32_length_72862_cov_4.436877 69229..70872 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10041.t1.exon1Gcaud10041.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_32_length_72862_cov_4.436877 69229..70872 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10041.t1.start1Gcaud10041.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_32_length_72862_cov_4.436877 70870..70872 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10041.t1Gcaud10041.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_32_length_72862_cov_4.436877 69229..70872 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10041.t1 ID=Gcaud10041.t1|Name=Gcaud10041.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=548bp
MSHPVLSSARANRTRRFSHAERENNNLTGLVHPANPRTLQHEIHRLVKAL
QELPNSLSRYQFLMHVLANDEQLFFAAVQNNVRKLLPMIYTPTVGEACQR
YSDLHIPLRGLWIGIDQRGRVDQVLANWPETDVRAIVVSDCERILGLGDL
GANGMGIPVGKLLLYSACGGIRPEHCLPVVLDVGCNTPSVRNNENYIGLD
CDRVTGEQYDDFVEEFMDAAVKRFGKSCLIQFEDFGNSNALRLLKKYQND
VCCFNDDIQGTAAVGLAGILTALRVDGVPSSLEDHRFLFLGAGSAGIGIA
RLIVLALKREGIKEEEALKKCWFVDSKGLIYNGREHISEAKRDFAHEVSS
DVAKVGKNGLLEVVEAIKPTALIGVSTIAGSFTEDVIREMADINERPIIF
ALSNPTSKSECTAEEAYKYSDARAIFASGSPFPSVKLADGRKMIPGQGNN
AYIFPGVGLGVLLSQTTSIPESMLLAAADTLSKLVEVEQINTGCMYPDLS
SLLDISAAIAKAVCDEAQRLGLNQAELSGLDVKEIRHGMYEPGRLLN*
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spliced messenger RNA

>Gcaud10041.t1 ID=Gcaud10041.t1|Name=Gcaud10041.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1644bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:69229..70872- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCCACCCGGTACTCTCCAGCGCCCGTGCCAACCGTACGCGCCGCTT
CTCGCACGCAGAGCGGGAGAACAACAACTTGACCGGTCTCGTACATCCCG
CAAACCCTCGTACTCTACAGCATGAGATCCATCGTCTCGTAAAAGCGCTG
CAAGAGCTGCCCAACTCCCTTTCTCGCTACCAGTTTCTCATGCATGTGCT
GGCAAATGATGAGCAGCTCTTCTTTGCCGCCGTGCAGAATAACGTGCGAA
AGCTGTTGCCTATGATCTACACCCCCACCGTTGGTGAGGCTTGCCAGCGA
TATTCTGACCTGCATATTCCTCTGCGCGGCTTGTGGATTGGTATTGATCA
GCGCGGCAGAGTTGATCAGGTGCTAGCCAACTGGCCTGAAACTGATGTGA
GGGCTATTGTTGTCTCCGATTGTGAGCGCATTCTCGGTCTTGGCGATCTT
GGAGCAAACGGTATGGGTATTCCCGTCGGAAAGCTATTGCTGTACTCCGC
ATGCGGTGGTATTCGACCAGAGCATTGCTTGCCTGTCGTGCTTGACGTTG
GATGCAACACTCCGTCAGTTCGAAACAATGAAAATTACATTGGCCTCGAT
TGTGATCGCGTCACCGGCGAGCAGTATGATGACTTTGTGGAAGAGTTTAT
GGACGCGGCGGTGAAACGTTTTGGAAAGAGCTGTCTAATCCAGTTCGAAG
ACTTTGGAAACTCCAATGCCTTGCGTTTGCTCAAGAAGTATCAAAATGAC
GTGTGTTGCTTCAACGACGATATACAGGGCACTGCTGCCGTTGGACTTGC
TGGCATTCTCACCGCCTTGCGTGTCGATGGTGTGCCTTCTTCTTTGGAGG
ACCACAGATTCCTTTTCTTGGGTGCCGGAAGCGCAGGTATTGGTATCGCT
AGATTGATCGTTTTGGCACTGAAGAGGGAAGGGATAAAGGAAGAGGAAGC
GCTGAAAAAGTGCTGGTTCGTGGACTCCAAGGGTCTTATTTACAATGGAC
GAGAGCATATCAGCGAGGCGAAACGAGACTTTGCGCACGAAGTCAGCTCT
GACGTCGCTAAAGTGGGCAAGAACGGTTTGCTTGAAGTCGTCGAGGCTAT
CAAACCAACTGCTTTGATTGGGGTGAGTACAATTGCAGGTTCGTTTACTG
AGGATGTGATTCGTGAGATGGCGGACATAAACGAGAGACCGATCATATTT
GCGTTGAGCAATCCGACAAGTAAGTCCGAGTGTACTGCAGAAGAGGCTTA
CAAGTACAGCGACGCTCGAGCCATTTTCGCGTCGGGATCGCCGTTTCCAT
CCGTCAAACTGGCAGATGGACGCAAGATGATACCCGGGCAAGGCAACAAC
GCGTATATATTCCCTGGCGTCGGTTTGGGAGTTCTGCTTTCACAAACAAC
GAGCATTCCAGAGTCGATGCTCCTTGCTGCCGCAGATACGTTGAGCAAGT
TGGTCGAGGTCGAACAGATAAACACTGGATGCATGTATCCAGACTTGTCA
TCGTTGCTGGACATTTCGGCGGCCATTGCGAAAGCGGTTTGTGACGAGGC
ACAACGGCTGGGTCTCAACCAGGCCGAATTATCTGGTTTAGACGTGAAGG
AGATCCGCCATGGCATGTATGAACCGGGAAGGCTTCTGAACTAG
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protein sequence of Gcaud10041.t1

>Gcaud10041.t1 ID=Gcaud10041.t1|Name=Gcaud10041.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=548bp
MSHPVLSSARANRTRRFSHAERENNNLTGLVHPANPRTLQHEIHRLVKAL
QELPNSLSRYQFLMHVLANDEQLFFAAVQNNVRKLLPMIYTPTVGEACQR
YSDLHIPLRGLWIGIDQRGRVDQVLANWPETDVRAIVVSDCERILGLGDL
GANGMGIPVGKLLLYSACGGIRPEHCLPVVLDVGCNTPSVRNNENYIGLD
CDRVTGEQYDDFVEEFMDAAVKRFGKSCLIQFEDFGNSNALRLLKKYQND
VCCFNDDIQGTAAVGLAGILTALRVDGVPSSLEDHRFLFLGAGSAGIGIA
RLIVLALKREGIKEEEALKKCWFVDSKGLIYNGREHISEAKRDFAHEVSS
DVAKVGKNGLLEVVEAIKPTALIGVSTIAGSFTEDVIREMADINERPIIF
ALSNPTSKSECTAEEAYKYSDARAIFASGSPFPSVKLADGRKMIPGQGNN
AYIFPGVGLGVLLSQTTSIPESMLLAAADTLSKLVEVEQINTGCMYPDLS
SLLDISAAIAKAVCDEAQRLGLNQAELSGLDVKEIRHGMYEPGRLLN*
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mRNA from alignment at NODE_32_length_72862_cov_4.436877:69229..70872-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10041.t1 ID=Gcaud10041.t1|Name=Gcaud10041.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1644bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:69229..70872- (Gracilaria caudata M_176_S67 male)
ATGTCCCACCCGGTACTCTCCAGCGCCCGTGCCAACCGTACGCGCCGCTT
CTCGCACGCAGAGCGGGAGAACAACAACTTGACCGGTCTCGTACATCCCG
CAAACCCTCGTACTCTACAGCATGAGATCCATCGTCTCGTAAAAGCGCTG
CAAGAGCTGCCCAACTCCCTTTCTCGCTACCAGTTTCTCATGCATGTGCT
GGCAAATGATGAGCAGCTCTTCTTTGCCGCCGTGCAGAATAACGTGCGAA
AGCTGTTGCCTATGATCTACACCCCCACCGTTGGTGAGGCTTGCCAGCGA
TATTCTGACCTGCATATTCCTCTGCGCGGCTTGTGGATTGGTATTGATCA
GCGCGGCAGAGTTGATCAGGTGCTAGCCAACTGGCCTGAAACTGATGTGA
GGGCTATTGTTGTCTCCGATTGTGAGCGCATTCTCGGTCTTGGCGATCTT
GGAGCAAACGGTATGGGTATTCCCGTCGGAAAGCTATTGCTGTACTCCGC
ATGCGGTGGTATTCGACCAGAGCATTGCTTGCCTGTCGTGCTTGACGTTG
GATGCAACACTCCGTCAGTTCGAAACAATGAAAATTACATTGGCCTCGAT
TGTGATCGCGTCACCGGCGAGCAGTATGATGACTTTGTGGAAGAGTTTAT
GGACGCGGCGGTGAAACGTTTTGGAAAGAGCTGTCTAATCCAGTTCGAAG
ACTTTGGAAACTCCAATGCCTTGCGTTTGCTCAAGAAGTATCAAAATGAC
GTGTGTTGCTTCAACGACGATATACAGGGCACTGCTGCCGTTGGACTTGC
TGGCATTCTCACCGCCTTGCGTGTCGATGGTGTGCCTTCTTCTTTGGAGG
ACCACAGATTCCTTTTCTTGGGTGCCGGAAGCGCAGGTATTGGTATCGCT
AGATTGATCGTTTTGGCACTGAAGAGGGAAGGGATAAAGGAAGAGGAAGC
GCTGAAAAAGTGCTGGTTCGTGGACTCCAAGGGTCTTATTTACAATGGAC
GAGAGCATATCAGCGAGGCGAAACGAGACTTTGCGCACGAAGTCAGCTCT
GACGTCGCTAAAGTGGGCAAGAACGGTTTGCTTGAAGTCGTCGAGGCTAT
CAAACCAACTGCTTTGATTGGGGTGAGTACAATTGCAGGTTCGTTTACTG
AGGATGTGATTCGTGAGATGGCGGACATAAACGAGAGACCGATCATATTT
GCGTTGAGCAATCCGACAAGTAAGTCCGAGTGTACTGCAGAAGAGGCTTA
CAAGTACAGCGACGCTCGAGCCATTTTCGCGTCGGGATCGCCGTTTCCAT
CCGTCAAACTGGCAGATGGACGCAAGATGATACCCGGGCAAGGCAACAAC
GCGTATATATTCCCTGGCGTCGGTTTGGGAGTTCTGCTTTCACAAACAAC
GAGCATTCCAGAGTCGATGCTCCTTGCTGCCGCAGATACGTTGAGCAAGT
TGGTCGAGGTCGAACAGATAAACACTGGATGCATGTATCCAGACTTGTCA
TCGTTGCTGGACATTTCGGCGGCCATTGCGAAAGCGGTTTGTGACGAGGC
ACAACGGCTGGGTCTCAACCAGGCCGAATTATCTGGTTTAGACGTGAAGG
AGATCCGCCATGGCATGTATGAACCGGGAAGGCTTCTGAACTAG
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Coding sequence (CDS) from alignment at NODE_32_length_72862_cov_4.436877:69229..70872-

>Gcaud10041.t1 ID=Gcaud10041.t1|Name=Gcaud10041.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1644bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:69229..70872- (Gracilaria caudata M_176_S67 male)
ATGTCCCACCCGGTACTCTCCAGCGCCCGTGCCAACCGTACGCGCCGCTT
CTCGCACGCAGAGCGGGAGAACAACAACTTGACCGGTCTCGTACATCCCG
CAAACCCTCGTACTCTACAGCATGAGATCCATCGTCTCGTAAAAGCGCTG
CAAGAGCTGCCCAACTCCCTTTCTCGCTACCAGTTTCTCATGCATGTGCT
GGCAAATGATGAGCAGCTCTTCTTTGCCGCCGTGCAGAATAACGTGCGAA
AGCTGTTGCCTATGATCTACACCCCCACCGTTGGTGAGGCTTGCCAGCGA
TATTCTGACCTGCATATTCCTCTGCGCGGCTTGTGGATTGGTATTGATCA
GCGCGGCAGAGTTGATCAGGTGCTAGCCAACTGGCCTGAAACTGATGTGA
GGGCTATTGTTGTCTCCGATTGTGAGCGCATTCTCGGTCTTGGCGATCTT
GGAGCAAACGGTATGGGTATTCCCGTCGGAAAGCTATTGCTGTACTCCGC
ATGCGGTGGTATTCGACCAGAGCATTGCTTGCCTGTCGTGCTTGACGTTG
GATGCAACACTCCGTCAGTTCGAAACAATGAAAATTACATTGGCCTCGAT
TGTGATCGCGTCACCGGCGAGCAGTATGATGACTTTGTGGAAGAGTTTAT
GGACGCGGCGGTGAAACGTTTTGGAAAGAGCTGTCTAATCCAGTTCGAAG
ACTTTGGAAACTCCAATGCCTTGCGTTTGCTCAAGAAGTATCAAAATGAC
GTGTGTTGCTTCAACGACGATATACAGGGCACTGCTGCCGTTGGACTTGC
TGGCATTCTCACCGCCTTGCGTGTCGATGGTGTGCCTTCTTCTTTGGAGG
ACCACAGATTCCTTTTCTTGGGTGCCGGAAGCGCAGGTATTGGTATCGCT
AGATTGATCGTTTTGGCACTGAAGAGGGAAGGGATAAAGGAAGAGGAAGC
GCTGAAAAAGTGCTGGTTCGTGGACTCCAAGGGTCTTATTTACAATGGAC
GAGAGCATATCAGCGAGGCGAAACGAGACTTTGCGCACGAAGTCAGCTCT
GACGTCGCTAAAGTGGGCAAGAACGGTTTGCTTGAAGTCGTCGAGGCTAT
CAAACCAACTGCTTTGATTGGGGTGAGTACAATTGCAGGTTCGTTTACTG
AGGATGTGATTCGTGAGATGGCGGACATAAACGAGAGACCGATCATATTT
GCGTTGAGCAATCCGACAAGTAAGTCCGAGTGTACTGCAGAAGAGGCTTA
CAAGTACAGCGACGCTCGAGCCATTTTCGCGTCGGGATCGCCGTTTCCAT
CCGTCAAACTGGCAGATGGACGCAAGATGATACCCGGGCAAGGCAACAAC
GCGTATATATTCCCTGGCGTCGGTTTGGGAGTTCTGCTTTCACAAACAAC
GAGCATTCCAGAGTCGATGCTCCTTGCTGCCGCAGATACGTTGAGCAAGT
TGGTCGAGGTCGAACAGATAAACACTGGATGCATGTATCCAGACTTGTCA
TCGTTGCTGGACATTTCGGCGGCCATTGCGAAAGCGGTTTGTGACGAGGC
ACAACGGCTGGGTCTCAACCAGGCCGAATTATCTGGTTTAGACGTGAAGG
AGATCCGCCATGGCATGTATGAACCGGGAAGGCTTCTGAACTAG
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