Gcaud10034.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10034.t1
Unique Name	Gcaud10034.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	388

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_32_length_72862_cov_4.436877	contig	NODE_32_length_72862_cov_4.436877:51840..53173 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1405.DJ92_497
PFAMs	Bestrophin
Max annot lvl	1239\|Firmicutes
Evalue	3.15e-21
EggNOG OGs	COG3781@1\|root,COG3781@2\|Bacteria,1VWFE@1239\|Firmicutes
Description	Bestrophin, RFP-TM, chloride channel
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10034	Gcaud10034	Gracilaria caudata M_176_S67 male	gene	NODE_32_length_72862_cov_4.436877 51840..53173 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10034.t1	Gcaud10034.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_32_length_72862_cov_4.436877 51840..53173 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10034.t1.stop1	Gcaud10034.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_32_length_72862_cov_4.436877 51840..51842 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10034.t1.CDS1	Gcaud10034.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_32_length_72862_cov_4.436877 51840..52417 -
Gcaud10034.t1.CDS2	Gcaud10034.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_32_length_72862_cov_4.436877 52504..52932 -
Gcaud10034.t1.CDS3	Gcaud10034.t1.CDS3	Gracilaria caudata M_176_S67 male	CDS	NODE_32_length_72862_cov_4.436877 53017..53173 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10034.t1.exon1	Gcaud10034.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_32_length_72862_cov_4.436877 51840..52417 -
Gcaud10034.t1.exon2	Gcaud10034.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_32_length_72862_cov_4.436877 52504..52932 -
Gcaud10034.t1.exon3	Gcaud10034.t1.exon3	Gracilaria caudata M_176_S67 male	exon	NODE_32_length_72862_cov_4.436877 53017..53173 -

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10034.t1.intron1	Gcaud10034.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_32_length_72862_cov_4.436877 52418..52503 -
Gcaud10034.t1.intron2	Gcaud10034.t1.intron2	Gracilaria caudata M_176_S67 male	intron	NODE_32_length_72862_cov_4.436877 52933..53016 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10034.t1.start1	Gcaud10034.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_32_length_72862_cov_4.436877 53171..53173 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_32_length_72862_cov_4.436877:51840..53173-
coding sequence from alignment at NODE_32_length_72862_cov_4.436877:51840..53173-

mRNA sequence

>Gcaud10034.t1 ID=Gcaud10034.t1|Name=Gcaud10034.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=388bp
MDGQSYEAVPPEEEQSPNESYVTITVDEENRNKPTLGPPGMKLKRNAQIE
YNPFDWRRTVLVIKGRPVISSAFYVVCALGTILVILSGMAGVGVDENRTC
RAWCSRFALGSQPHAYIGFILFLLMSFRTQQSYKNYVSGQKSFYQIQTRV
RSFVHFFLDVVPREDVSKEHRARILAHLIAFPYALTAEVRKDREFNEEGL
DKILTEDDMQRIRDSASRPLFVLETIGQMLLTYCGKVHPKMYFKLHSELI
GLYTPYSEVERINLNPMGFAYVVHLRLLLMTYLTTLPLALVEQMGYSTIP
VFWVIAYSLMSLEMLAVEVENPFGYMGSDLRLFTFHTLLRDTVMESWRWW
LNNTAAEHNNPHLEQQYENFGVEDEDEDAMSDLFCYW*

spliced messenger RNA

>Gcaud10034.t1 ID=Gcaud10034.t1|Name=Gcaud10034.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1164bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:51840..53173- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGGTCAAAGTTATGAAGCCGTTCCTCCCGAAGAAGAACAATCCCC
TAATGAGTCGTACGTAACGATTACAGTCGATGAAGAGAATAGAAACAAGC
CCACTTTGGGACCTCCTGGAATGAAACTGAAGCGCAATGCCCAAATTGAA
TACAATCCGTTCGACTGGCGTCGAACAGTGTTGGTGATCAAAGGACGACC
AGTGATCAGCAGCGCGTTTTATGTTGTTTGTGCACTGGGCACGATACTCG
TTATTCTCTCAGGCATGGCTGGAGTCGGAGTAGATGAAAACCGTACGTGT
CGAGCTTGGTGTTCTCGCTTCGCACTTGGCTCTCAGCCTCACGCGTATAT
CGGTTTCATTCTGTTTTTGCTGATGTCGTTTCGCACGCAGCAGAGTTACA
AGAATTACGTCTCTGGACAGAAGTCGTTTTATCAGATTCAGACTCGAGTA
AGAAGCTTTGTCCACTTCTTTTTGGATGTTGTCCCACGTGAGGATGTAAG
CAAGGAACATAGGGCTCGCATCTTGGCTCATCTCATCGCATTCCCTTATG
CACTGACGGCGGAAGTGCGAAAGGACCGCGAGTTCAACGAGGAAGGTTTG
GACAAGATCCTGACGGAAGATGATATGCAACGGATTCGTGATTCAGCCTC
TCGCCCTCTGTTCGTTCTAGAAACAATAGGTCAGATGCTGCTTACGTATT
GTGGGAAGGTGCACCCTAAGATGTACTTCAAATTGCACTCTGAACTTATC
GGATTATACACACCGTACAGTGAGGTAGAACGAATCAATCTGAATCCCAT
GGGCTTTGCGTATGTGGTTCATCTTCGGTTACTGCTCATGACATATCTGA
CAACTCTACCTTTGGCTCTTGTAGAACAAATGGGCTATTCGACAATCCCT
GTTTTTTGGGTAATTGCGTACTCTTTGATGTCACTTGAGATGCTGGCTGT
GGAAGTTGAAAACCCGTTCGGGTACATGGGCTCTGACCTGAGACTGTTTA
CATTCCACACATTGTTGAGAGACACGGTTATGGAGAGCTGGCGCTGGTGG
CTGAACAACACTGCCGCAGAGCATAACAATCCGCATCTAGAGCAGCAGTA
CGAAAACTTTGGTGTCGAAGACGAGGACGAAGATGCAATGTCAGACTTGT
TCTGCTACTGGTAG

protein sequence of Gcaud10034.t1

>Gcaud10034.t1 ID=Gcaud10034.t1|Name=Gcaud10034.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=388bp
MDGQSYEAVPPEEEQSPNESYVTITVDEENRNKPTLGPPGMKLKRNAQIE
YNPFDWRRTVLVIKGRPVISSAFYVVCALGTILVILSGMAGVGVDENRTC
RAWCSRFALGSQPHAYIGFILFLLMSFRTQQSYKNYVSGQKSFYQIQTRV
RSFVHFFLDVVPREDVSKEHRARILAHLIAFPYALTAEVRKDREFNEEGL
DKILTEDDMQRIRDSASRPLFVLETIGQMLLTYCGKVHPKMYFKLHSELI
GLYTPYSEVERINLNPMGFAYVVHLRLLLMTYLTTLPLALVEQMGYSTIP
VFWVIAYSLMSLEMLAVEVENPFGYMGSDLRLFTFHTLLRDTVMESWRWW
LNNTAAEHNNPHLEQQYENFGVEDEDEDAMSDLFCYW*

mRNA from alignment at NODE_32_length_72862_cov_4.436877:51840..53173-

Legend: polypeptideCDSexonstart_codonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10034.t1 ID=Gcaud10034.t1|Name=Gcaud10034.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1334bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:51840..53173- (Gracilaria caudata M_176_S67 male)
ATGGATGGTCAAAGTTATGAAGCCGTTCCTCCCGAAGAAGAACAATCCCC
TAATGAGTCGTACGTAACGATTACAGTCGATGAAGAGAATAGAAACAAGC
CCACTTTGGGACCTCCTGGAATGAAACTGAAGCGCAATGCCCAAATTGAA
TACAATCGTAAGTTTATCTCAGCATGAAACTGGTTTCCTTTCGGTTGAAC
TGACTTTCCTAATTGATGATGATACTCGAAAACTAAAACAGCGTTCGACT
GGCGTCGAACAGTGTTGGTGATCAAAGGACGACCAGTGATCAGCAGCGCG
TTTTATGTTGTTTGTGCACTGGGCACGATACTCGTTATTCTCTCAGGCAT
GGCTGGAGTCGGAGTAGATGAAAACCGTACGTGTCGAGCTTGGTGTTCTC
GCTTCGCACTTGGCTCTCAGCCTCACGCGTATATCGGTTTCATTCTGTTT
TTGCTGATGTCGTTTCGCACGCAGCAGAGTTACAAGAATTACGTCTCTGG
ACAGAAGTCGTTTTATCAGATTCAGACTCGAGTAAGAAGCTTTGTCCACT
TCTTTTTGGATGTTGTCCCACGTGAGGATGTAAGCAAGGAACATAGGGCT
CGCATCTTGGCTCATCTCATCGCATTCCCTTATGCACTGACGGCGGAAGT
GCGAAAGGACCGCGAGTTCAGTACGTCTAAGCAAGCATTGAAAGCCGACA
ACGTGCGTGATGATGAAGAGAGCTAACGCGAACTGAAATGTTTCTTGATT
GAGCAGACGAGGAAGGTTTGGACAAGATCCTGACGGAAGATGATATGCAA
CGGATTCGTGATTCAGCCTCTCGCCCTCTGTTCGTTCTAGAAACAATAGG
TCAGATGCTGCTTACGTATTGTGGGAAGGTGCACCCTAAGATGTACTTCA
AATTGCACTCTGAACTTATCGGATTATACACACCGTACAGTGAGGTAGAA
CGAATCAATCTGAATCCCATGGGCTTTGCGTATGTGGTTCATCTTCGGTT
ACTGCTCATGACATATCTGACAACTCTACCTTTGGCTCTTGTAGAACAAA
TGGGCTATTCGACAATCCCTGTTTTTTGGGTAATTGCGTACTCTTTGATG
TCACTTGAGATGCTGGCTGTGGAAGTTGAAAACCCGTTCGGGTACATGGG
CTCTGACCTGAGACTGTTTACATTCCACACATTGTTGAGAGACACGGTTA
TGGAGAGCTGGCGCTGGTGGCTGAACAACACTGCCGCAGAGCATAACAAT
CCGCATCTAGAGCAGCAGTACGAAAACTTTGGTGTCGAAGACGAGGACGA
AGATGCAATGTCAGACTTGTTCTGCTACTGGTAG

Coding sequence (CDS) from alignment at NODE_32_length_72862_cov_4.436877:51840..53173-

>Gcaud10034.t1 ID=Gcaud10034.t1|Name=Gcaud10034.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1164bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:51840..53173- (Gracilaria caudata M_176_S67 male)
ATGGATGGTCAAAGTTATGAAGCCGTTCCTCCCGAAGAAGAACAATCCCC
TAATGAGTCGTACGTAACGATTACAGTCGATGAAGAGAATAGAAACAAGC
CCACTTTGGGACCTCCTGGAATGAAACTGAAGCGCAATGCCCAAATTGAA
TACAATCCGTTCGACTGGCGTCGAACAGTGTTGGTGATCAAAGGACGACC
AGTGATCAGCAGCGCGTTTTATGTTGTTTGTGCACTGGGCACGATACTCG
TTATTCTCTCAGGCATGGCTGGAGTCGGAGTAGATGAAAACCGTACGTGT
CGAGCTTGGTGTTCTCGCTTCGCACTTGGCTCTCAGCCTCACGCGTATAT
CGGTTTCATTCTGTTTTTGCTGATGTCGTTTCGCACGCAGCAGAGTTACA
AGAATTACGTCTCTGGACAGAAGTCGTTTTATCAGATTCAGACTCGAGTA
AGAAGCTTTGTCCACTTCTTTTTGGATGTTGTCCCACGTGAGGATGTAAG
CAAGGAACATAGGGCTCGCATCTTGGCTCATCTCATCGCATTCCCTTATG
CACTGACGGCGGAAGTGCGAAAGGACCGCGAGTTCAACGAGGAAGGTTTG
GACAAGATCCTGACGGAAGATGATATGCAACGGATTCGTGATTCAGCCTC
TCGCCCTCTGTTCGTTCTAGAAACAATAGGTCAGATGCTGCTTACGTATT
GTGGGAAGGTGCACCCTAAGATGTACTTCAAATTGCACTCTGAACTTATC
GGATTATACACACCGTACAGTGAGGTAGAACGAATCAATCTGAATCCCAT
GGGCTTTGCGTATGTGGTTCATCTTCGGTTACTGCTCATGACATATCTGA
CAACTCTACCTTTGGCTCTTGTAGAACAAATGGGCTATTCGACAATCCCT
GTTTTTTGGGTAATTGCGTACTCTTTGATGTCACTTGAGATGCTGGCTGT
GGAAGTTGAAAACCCGTTCGGGTACATGGGCTCTGACCTGAGACTGTTTA
CATTCCACACATTGTTGAGAGACACGGTTATGGAGAGCTGGCGCTGGTGG
CTGAACAACACTGCCGCAGAGCATAACAATCCGCATCTAGAGCAGCAGTA
CGAAAACTTTGGTGTCGAAGACGAGGACGAAGATGCAATGTCAGACTTGT
TCTGCTACTGGTAG