Gcaud10033.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10033.t1
Unique NameGcaud10033.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length507
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_32_length_72862_cov_4.436877contigNODE_32_length_72862_cov_4.436877:49744..51264 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708873.1
Preferred nameD2HGDH
PFAMsFAD-oxidase_C,FAD_binding_4
Max annot lvl2759|Eukaryota
KEGG rclassRC00044
KEGG koko:K18204,ko:K21618
KEGG ReactionR11593
KEGG Pathwayko00620,map00620
GOsGO:0000166,GO:0003674,GO:0003779,GO:0003824,GO:0004457,GO:0004458,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006089,GO:0006091,GO:0006103,GO:0006807,GO:0008092,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009853,GO:0009987,GO:0010035,GO:0010038,GO:0010042,GO:0010043,GO:0015980,GO:0016053,GO:0016054,GO:0016491,GO:0016614,GO:0016898,GO:0019249,GO:0019516,GO:0019538,GO:0019752,GO:0022900,GO:0022904,GO:0030447,GO:0031974,GO:0032025,GO:0032787,GO:0036094,GO:0040007,GO:0042221,GO:0043094,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046394,GO:0046395,GO:0047545,GO:0048037,GO:0050660,GO:0050662,GO:0050896,GO:0051186,GO:0051990,GO:0055114,GO:0070013,GO:0071704,GO:0071949,GO:0072329,GO:0072330,GO:0097159,GO:0099615,GO:1901265,GO:1901363,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901616,GO:1901617,GO:1903457
Evalue1.25e-163
EggNOG OGsCOG0277@1|root,KOG1232@2759|Eukaryota
EC1.1.99.39,1.1.99.40
DescriptionDehydrogenase
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10033Gcaud10033Gracilaria caudata M_176_S67 malegeneNODE_32_length_72862_cov_4.436877 49744..51264 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10033.t1.stop1Gcaud10033.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_32_length_72862_cov_4.436877 49744..49746 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10033.t1.CDS1Gcaud10033.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_32_length_72862_cov_4.436877 49744..51264 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10033.t1.exon1Gcaud10033.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_32_length_72862_cov_4.436877 49744..51264 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10033.t1.start1Gcaud10033.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_32_length_72862_cov_4.436877 51262..51264 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10033.t1Gcaud10033.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_32_length_72862_cov_4.436877 49744..51264 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10033.t1 ID=Gcaud10033.t1|Name=Gcaud10033.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=507bp
MMRASFPIRRCRHRLCFTRSFAQPAINRDTRFKQISASDINHFRQILGEA
AVITNQDDLQPYNVDWMHRFQGASSIALKPSTTEHVSQIMQYCNENQIAV
VPQGGNTGLVGGSVPVFDELIISLSAMNQIEHFDNNSGVVTTQAGVVLET
LDNYVGAAGYRVPLDLGAKGSCQIGGNVATNAGGSRFVRYGPLRASVVGL
EAVLPDGRVLDAMTRVRKDNTGYDVKQLMIGAEGTLGIITRLAIACPMKS
SSIDTMIVHVTNSDHVPPLLRLAKQSLGEVLSAIEFMDASSVHMADTHLS
HVSDPLSIPNDPQHSLVLIECAGSNAEHSREKLEAFLEAAFEQDLVSDGV
IAESETQSNELWELRESLPEAVLKAGSAATLKYDVSVPLAHFHEMIEVAR
GRVKDLSSVQVCGWGHIGDENLHLNVAVQDSAQKDAAQRCLEPWVYEFVS
GVGGSISAEHGLGVMKAGAIGYSKGDVAVDIMRTVKEVLDVNGICNPYKV
LPAHSP*
back to top

spliced messenger RNA

>Gcaud10033.t1 ID=Gcaud10033.t1|Name=Gcaud10033.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:49744..51264- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCGAGCCTCATTTCCAATCAGACGCTGCAGACACCGCCTTTGTTT
CACCAGATCTTTTGCGCAACCAGCAATTAATAGAGACACCCGGTTTAAAC
AGATCTCCGCCTCAGACATCAATCATTTCCGTCAGATACTAGGCGAAGCC
GCGGTAATCACCAATCAGGACGATCTTCAACCGTACAATGTCGATTGGAT
GCACCGTTTTCAGGGCGCTAGCAGTATTGCATTAAAGCCATCCACCACCG
AGCACGTATCCCAAATCATGCAATACTGCAATGAGAATCAAATTGCGGTC
GTACCACAAGGTGGTAATACAGGTCTTGTAGGCGGAAGTGTTCCGGTCTT
CGATGAGCTTATAATATCGCTCTCTGCAATGAATCAGATTGAGCATTTTG
ACAACAACTCTGGCGTTGTCACAACCCAAGCTGGTGTTGTCTTGGAAACC
CTCGACAATTACGTGGGTGCTGCAGGGTATCGTGTTCCTCTTGATCTAGG
TGCCAAGGGAAGCTGTCAAATTGGAGGAAACGTCGCTACAAATGCAGGAG
GCTCCAGGTTTGTCAGATATGGTCCACTGCGCGCCAGCGTCGTCGGACTG
GAGGCTGTCTTGCCAGATGGTCGCGTATTGGATGCCATGACCCGCGTTAG
AAAAGACAACACTGGATATGATGTGAAACAACTTATGATCGGTGCTGAAG
GAACTCTTGGGATCATAACCCGTCTGGCCATCGCCTGTCCAATGAAGAGT
TCTTCCATTGACACCATGATTGTGCACGTCACCAATTCAGATCATGTTCC
ACCGTTGCTACGATTGGCGAAGCAATCCCTCGGCGAAGTTCTTTCTGCGA
TTGAGTTCATGGATGCATCTAGCGTACATATGGCAGACACTCATCTTTCC
CATGTATCAGATCCTCTCAGCATACCAAACGACCCTCAACATTCTCTTGT
ACTAATTGAGTGTGCCGGAAGTAATGCTGAACACAGTCGTGAAAAGCTGG
AAGCATTTCTGGAGGCTGCCTTCGAACAAGATCTCGTTTCCGACGGCGTC
ATAGCAGAGAGCGAGACACAAAGCAACGAACTGTGGGAATTGCGCGAAAG
TTTACCAGAGGCGGTTCTCAAGGCTGGCTCAGCTGCAACGCTAAAGTATG
ACGTCAGTGTGCCCCTTGCACATTTTCACGAGATGATTGAAGTGGCTAGA
GGGCGTGTAAAGGACCTCAGCTCTGTGCAAGTTTGTGGATGGGGTCACAT
TGGGGACGAGAACCTCCACCTCAATGTCGCCGTTCAAGACAGCGCCCAAA
AGGATGCAGCACAACGGTGTTTAGAACCTTGGGTTTACGAATTTGTCTCT
GGCGTTGGAGGAAGCATTAGTGCGGAACACGGTCTTGGGGTTATGAAGGC
TGGGGCCATTGGATATTCGAAGGGTGACGTTGCGGTGGACATTATGCGTA
CTGTTAAGGAAGTCCTCGACGTGAATGGTATTTGCAATCCTTACAAAGTT
CTACCCGCTCATTCACCATAA
back to top

protein sequence of Gcaud10033.t1

>Gcaud10033.t1 ID=Gcaud10033.t1|Name=Gcaud10033.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=507bp
MMRASFPIRRCRHRLCFTRSFAQPAINRDTRFKQISASDINHFRQILGEA
AVITNQDDLQPYNVDWMHRFQGASSIALKPSTTEHVSQIMQYCNENQIAV
VPQGGNTGLVGGSVPVFDELIISLSAMNQIEHFDNNSGVVTTQAGVVLET
LDNYVGAAGYRVPLDLGAKGSCQIGGNVATNAGGSRFVRYGPLRASVVGL
EAVLPDGRVLDAMTRVRKDNTGYDVKQLMIGAEGTLGIITRLAIACPMKS
SSIDTMIVHVTNSDHVPPLLRLAKQSLGEVLSAIEFMDASSVHMADTHLS
HVSDPLSIPNDPQHSLVLIECAGSNAEHSREKLEAFLEAAFEQDLVSDGV
IAESETQSNELWELRESLPEAVLKAGSAATLKYDVSVPLAHFHEMIEVAR
GRVKDLSSVQVCGWGHIGDENLHLNVAVQDSAQKDAAQRCLEPWVYEFVS
GVGGSISAEHGLGVMKAGAIGYSKGDVAVDIMRTVKEVLDVNGICNPYKV
LPAHSP*
back to top

mRNA from alignment at NODE_32_length_72862_cov_4.436877:49744..51264-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10033.t1 ID=Gcaud10033.t1|Name=Gcaud10033.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1521bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:49744..51264- (Gracilaria caudata M_176_S67 male)
ATGATGCGAGCCTCATTTCCAATCAGACGCTGCAGACACCGCCTTTGTTT
CACCAGATCTTTTGCGCAACCAGCAATTAATAGAGACACCCGGTTTAAAC
AGATCTCCGCCTCAGACATCAATCATTTCCGTCAGATACTAGGCGAAGCC
GCGGTAATCACCAATCAGGACGATCTTCAACCGTACAATGTCGATTGGAT
GCACCGTTTTCAGGGCGCTAGCAGTATTGCATTAAAGCCATCCACCACCG
AGCACGTATCCCAAATCATGCAATACTGCAATGAGAATCAAATTGCGGTC
GTACCACAAGGTGGTAATACAGGTCTTGTAGGCGGAAGTGTTCCGGTCTT
CGATGAGCTTATAATATCGCTCTCTGCAATGAATCAGATTGAGCATTTTG
ACAACAACTCTGGCGTTGTCACAACCCAAGCTGGTGTTGTCTTGGAAACC
CTCGACAATTACGTGGGTGCTGCAGGGTATCGTGTTCCTCTTGATCTAGG
TGCCAAGGGAAGCTGTCAAATTGGAGGAAACGTCGCTACAAATGCAGGAG
GCTCCAGGTTTGTCAGATATGGTCCACTGCGCGCCAGCGTCGTCGGACTG
GAGGCTGTCTTGCCAGATGGTCGCGTATTGGATGCCATGACCCGCGTTAG
AAAAGACAACACTGGATATGATGTGAAACAACTTATGATCGGTGCTGAAG
GAACTCTTGGGATCATAACCCGTCTGGCCATCGCCTGTCCAATGAAGAGT
TCTTCCATTGACACCATGATTGTGCACGTCACCAATTCAGATCATGTTCC
ACCGTTGCTACGATTGGCGAAGCAATCCCTCGGCGAAGTTCTTTCTGCGA
TTGAGTTCATGGATGCATCTAGCGTACATATGGCAGACACTCATCTTTCC
CATGTATCAGATCCTCTCAGCATACCAAACGACCCTCAACATTCTCTTGT
ACTAATTGAGTGTGCCGGAAGTAATGCTGAACACAGTCGTGAAAAGCTGG
AAGCATTTCTGGAGGCTGCCTTCGAACAAGATCTCGTTTCCGACGGCGTC
ATAGCAGAGAGCGAGACACAAAGCAACGAACTGTGGGAATTGCGCGAAAG
TTTACCAGAGGCGGTTCTCAAGGCTGGCTCAGCTGCAACGCTAAAGTATG
ACGTCAGTGTGCCCCTTGCACATTTTCACGAGATGATTGAAGTGGCTAGA
GGGCGTGTAAAGGACCTCAGCTCTGTGCAAGTTTGTGGATGGGGTCACAT
TGGGGACGAGAACCTCCACCTCAATGTCGCCGTTCAAGACAGCGCCCAAA
AGGATGCAGCACAACGGTGTTTAGAACCTTGGGTTTACGAATTTGTCTCT
GGCGTTGGAGGAAGCATTAGTGCGGAACACGGTCTTGGGGTTATGAAGGC
TGGGGCCATTGGATATTCGAAGGGTGACGTTGCGGTGGACATTATGCGTA
CTGTTAAGGAAGTCCTCGACGTGAATGGTATTTGCAATCCTTACAAAGTT
CTACCCGCTCATTCACCATAA
back to top

Coding sequence (CDS) from alignment at NODE_32_length_72862_cov_4.436877:49744..51264-

>Gcaud10033.t1 ID=Gcaud10033.t1|Name=Gcaud10033.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1521bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:49744..51264- (Gracilaria caudata M_176_S67 male)
ATGATGCGAGCCTCATTTCCAATCAGACGCTGCAGACACCGCCTTTGTTT
CACCAGATCTTTTGCGCAACCAGCAATTAATAGAGACACCCGGTTTAAAC
AGATCTCCGCCTCAGACATCAATCATTTCCGTCAGATACTAGGCGAAGCC
GCGGTAATCACCAATCAGGACGATCTTCAACCGTACAATGTCGATTGGAT
GCACCGTTTTCAGGGCGCTAGCAGTATTGCATTAAAGCCATCCACCACCG
AGCACGTATCCCAAATCATGCAATACTGCAATGAGAATCAAATTGCGGTC
GTACCACAAGGTGGTAATACAGGTCTTGTAGGCGGAAGTGTTCCGGTCTT
CGATGAGCTTATAATATCGCTCTCTGCAATGAATCAGATTGAGCATTTTG
ACAACAACTCTGGCGTTGTCACAACCCAAGCTGGTGTTGTCTTGGAAACC
CTCGACAATTACGTGGGTGCTGCAGGGTATCGTGTTCCTCTTGATCTAGG
TGCCAAGGGAAGCTGTCAAATTGGAGGAAACGTCGCTACAAATGCAGGAG
GCTCCAGGTTTGTCAGATATGGTCCACTGCGCGCCAGCGTCGTCGGACTG
GAGGCTGTCTTGCCAGATGGTCGCGTATTGGATGCCATGACCCGCGTTAG
AAAAGACAACACTGGATATGATGTGAAACAACTTATGATCGGTGCTGAAG
GAACTCTTGGGATCATAACCCGTCTGGCCATCGCCTGTCCAATGAAGAGT
TCTTCCATTGACACCATGATTGTGCACGTCACCAATTCAGATCATGTTCC
ACCGTTGCTACGATTGGCGAAGCAATCCCTCGGCGAAGTTCTTTCTGCGA
TTGAGTTCATGGATGCATCTAGCGTACATATGGCAGACACTCATCTTTCC
CATGTATCAGATCCTCTCAGCATACCAAACGACCCTCAACATTCTCTTGT
ACTAATTGAGTGTGCCGGAAGTAATGCTGAACACAGTCGTGAAAAGCTGG
AAGCATTTCTGGAGGCTGCCTTCGAACAAGATCTCGTTTCCGACGGCGTC
ATAGCAGAGAGCGAGACACAAAGCAACGAACTGTGGGAATTGCGCGAAAG
TTTACCAGAGGCGGTTCTCAAGGCTGGCTCAGCTGCAACGCTAAAGTATG
ACGTCAGTGTGCCCCTTGCACATTTTCACGAGATGATTGAAGTGGCTAGA
GGGCGTGTAAAGGACCTCAGCTCTGTGCAAGTTTGTGGATGGGGTCACAT
TGGGGACGAGAACCTCCACCTCAATGTCGCCGTTCAAGACAGCGCCCAAA
AGGATGCAGCACAACGGTGTTTAGAACCTTGGGTTTACGAATTTGTCTCT
GGCGTTGGAGGAAGCATTAGTGCGGAACACGGTCTTGGGGTTATGAAGGC
TGGGGCCATTGGATATTCGAAGGGTGACGTTGCGGTGGACATTATGCGTA
CTGTTAAGGAAGTCCTCGACGTGAATGGTATTTGCAATCCTTACAAAGTT
CTACCCGCTCATTCACCATAA
back to top