Gcaud10032.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10032.t1
Unique Name	Gcaud10032.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	759

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_32_length_72862_cov_4.436877	contig	NODE_32_length_72862_cov_4.436877:46473..48749 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	946362.XP_004989364.1
PFAMs	NB-ARC,PNP_UDP_1,TPR_10,TPR_12,TPR_7,TPR_8
Max annot lvl	33154\|Opisthokonta
Evalue	3.92e-10
EggNOG OGs	COG0457@1\|root,KOG1840@2759\|Eukaryota,38C2F@33154\|Opisthokonta
Description	Nephrocystin-3
COG category	Z

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10032	Gcaud10032	Gracilaria caudata M_176_S67 male	gene	NODE_32_length_72862_cov_4.436877 46473..48749 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10032.t1.start1	Gcaud10032.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_32_length_72862_cov_4.436877 46473..46475 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10032.t1.CDS1	Gcaud10032.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_32_length_72862_cov_4.436877 46473..48749 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10032.t1.exon1	Gcaud10032.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_32_length_72862_cov_4.436877 46473..48749 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10032.t1.stop1	Gcaud10032.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_32_length_72862_cov_4.436877 48747..48749 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10032.t1	Gcaud10032.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_32_length_72862_cov_4.436877 46473..48749 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_32_length_72862_cov_4.436877:46473..48749+
coding sequence from alignment at NODE_32_length_72862_cov_4.436877:46473..48749+

mRNA sequence

>Gcaud10032.t1 ID=Gcaud10032.t1|Name=Gcaud10032.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=759bp
MESTSSATTMTDFDTWVESHNGAPSVSDQIQLAKELCDRAVSGESVHMRR
TSIAKLGGHPSFSAQAEFPLVSWKGVSARWFHRVFMETRELQMLRSFGCR
MWFVRNRCITEILRRRGVTSGGSVIDHMSKLSDQSHGNSQITTLNPESTT
AAVDGEADTTEEASCFISYTGEMPLAKFSELIEHESLANKRLWMDVICVC
QFSWTERKDEEMKQFKQGFLYELRNRIGSIGTTALLVSRWDDLMVTLGKI
WVLWEIFSTVNGEASLDVLFTKPEEARFIEDVVRTTGGLERIDDSVSKVD
ANNAWSFVPEDRSMILNLMEESDGVFNVNKTVLKCLRTWFVSKAEDFYNR
LEQQGENVDLYRGTLISLHMNFGDIATALRMGREKIESVANKFGESHELT
LTAMNQLALTLQYDGMPSSMNEAEMLLKDVLKKCEVQFGQDHDISVGALQ
HLASLMRQWRRNDEAESYIRQALSSQVRLHDSNHPDTLSIKEDLLEILSE
KDTISEDEVFQFRRLDELRARLGPKHPKTLEAMTSLANYLELEDKLSEAG
ALYREIMRTMTEQLGADNDLRLTAVKALASVLHREGKLDASERLFREAFA
IERTKLGEGHSTTLDTMDNLCTVLNDNGQLEEADKLSLKCVKCSENSLGK
DHQETLTFAHNRAQLLFGQERGQEAKQLLRDVVRRHSSILGNSHPDTIRV
SANLGLMIAELGDLADGLSIVEAAVRSATGSLEENHPMALYAEDIRKALS
EAIQKSDK*

spliced messenger RNA

>Gcaud10032.t1 ID=Gcaud10032.t1|Name=Gcaud10032.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2277bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:46473..48749+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATCCACTTCCTCTGCAACTACAATGACGGACTTCGACACATGGGT
GGAAAGCCACAACGGGGCGCCCTCAGTCTCTGACCAGATCCAACTCGCCA
AAGAACTCTGTGACCGGGCGGTTTCGGGCGAGAGTGTGCATATGCGCCGC
ACCTCCATTGCGAAACTTGGGGGTCATCCAAGTTTTAGTGCTCAGGCAGA
ATTCCCGCTTGTTTCGTGGAAAGGCGTTAGTGCGCGTTGGTTTCATCGAG
TGTTCATGGAAACAAGAGAACTGCAGATGTTGCGGTCGTTTGGATGTCGT
ATGTGGTTCGTGCGCAATCGGTGCATTACCGAGATACTTCGCCGTCGTGG
AGTGACGTCGGGTGGGTCGGTCATAGATCACATGTCCAAACTGAGCGATC
AATCCCATGGCAACTCGCAAATTACCACCTTAAACCCCGAATCCACCACC
GCAGCTGTGGATGGCGAAGCTGACACAACAGAAGAGGCATCCTGCTTCAT
TTCATACACTGGTGAGATGCCATTGGCGAAGTTTAGCGAACTGATCGAGC
ACGAAAGCCTCGCCAATAAGCGGTTGTGGATGGATGTGATCTGTGTATGT
CAGTTTTCGTGGACTGAGCGGAAGGATGAGGAAATGAAGCAGTTCAAACA
GGGATTTCTGTACGAACTACGCAATCGGATAGGCTCCATCGGAACGACTG
CGCTCCTGGTGAGCCGCTGGGATGACTTGATGGTTACACTCGGTAAGATA
TGGGTACTATGGGAGATCTTTTCGACCGTCAATGGCGAGGCGTCGCTTGA
CGTACTGTTCACTAAGCCGGAAGAGGCACGGTTCATCGAAGACGTCGTGC
GAACGACTGGCGGGCTGGAGAGAATCGATGACTCCGTTTCGAAAGTGGAT
GCAAACAACGCGTGGTCGTTTGTGCCAGAGGACAGAAGCATGATCCTCAA
CCTGATGGAGGAGAGCGACGGTGTGTTCAACGTGAACAAGACGGTTCTGA
AATGTTTACGCACATGGTTTGTCAGCAAGGCGGAAGATTTCTACAATCGC
CTGGAGCAACAAGGGGAAAACGTCGACCTGTACCGTGGTACTCTCATCTC
GTTGCACATGAACTTCGGTGACATTGCGACTGCATTGCGGATGGGACGTG
AAAAAATTGAGAGTGTCGCCAACAAGTTTGGGGAATCACATGAACTTACG
TTAACAGCCATGAACCAACTGGCGCTCACGCTGCAATACGATGGGATGCC
ATCGAGCATGAACGAGGCTGAGATGCTGCTGAAAGACGTGCTGAAGAAAT
GTGAAGTACAGTTCGGCCAGGACCATGACATCTCCGTGGGAGCTCTTCAA
CATCTGGCTTCTCTGATGCGGCAGTGGAGGCGTAACGATGAGGCTGAATC
GTACATTCGCCAGGCGCTATCGTCACAAGTGCGGCTGCACGATAGCAATC
ACCCGGACACGTTATCAATCAAAGAAGACCTTCTAGAGATTCTATCCGAA
AAGGATACTATTTCTGAGGACGAGGTCTTTCAGTTCCGAAGACTCGACGA
GCTGCGGGCTCGGCTCGGGCCGAAGCACCCCAAAACACTGGAGGCCATGA
CCTCTCTCGCGAACTATCTGGAGCTAGAGGACAAGCTGTCGGAAGCCGGA
GCACTTTACCGTGAGATCATGCGCACGATGACAGAGCAGTTAGGAGCTGA
TAATGATCTGAGGCTGACAGCTGTCAAAGCTCTGGCGTCAGTTCTTCACC
GCGAAGGCAAGCTGGACGCTTCCGAACGCTTATTCCGCGAGGCGTTTGCC
ATTGAAAGAACGAAGCTCGGTGAAGGGCACTCTACCACACTGGACACGAT
GGATAATTTATGTACCGTGCTCAACGATAACGGGCAGCTGGAAGAGGCCG
ACAAGCTTTCTCTGAAATGTGTAAAGTGCAGTGAAAACAGTCTAGGCAAG
GATCATCAGGAAACGTTGACGTTTGCTCACAATAGAGCACAGCTGCTTTT
CGGACAGGAAAGAGGACAAGAGGCTAAACAACTCCTGCGTGACGTAGTGC
GTCGTCATAGCTCCATACTCGGCAATTCACACCCTGATACAATCCGAGTT
TCAGCCAACCTGGGGTTGATGATAGCGGAGCTCGGTGACTTGGCCGATGG
ACTCTCAATTGTTGAGGCAGCGGTCCGCAGTGCAACTGGTTCTCTAGAGG
AAAACCATCCAATGGCTCTTTACGCGGAAGACATTCGCAAAGCATTGAGT
GAAGCCATTCAGAAATCGGACAAATGA

protein sequence of Gcaud10032.t1

>Gcaud10032.t1 ID=Gcaud10032.t1|Name=Gcaud10032.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=759bp
MESTSSATTMTDFDTWVESHNGAPSVSDQIQLAKELCDRAVSGESVHMRR
TSIAKLGGHPSFSAQAEFPLVSWKGVSARWFHRVFMETRELQMLRSFGCR
MWFVRNRCITEILRRRGVTSGGSVIDHMSKLSDQSHGNSQITTLNPESTT
AAVDGEADTTEEASCFISYTGEMPLAKFSELIEHESLANKRLWMDVICVC
QFSWTERKDEEMKQFKQGFLYELRNRIGSIGTTALLVSRWDDLMVTLGKI
WVLWEIFSTVNGEASLDVLFTKPEEARFIEDVVRTTGGLERIDDSVSKVD
ANNAWSFVPEDRSMILNLMEESDGVFNVNKTVLKCLRTWFVSKAEDFYNR
LEQQGENVDLYRGTLISLHMNFGDIATALRMGREKIESVANKFGESHELT
LTAMNQLALTLQYDGMPSSMNEAEMLLKDVLKKCEVQFGQDHDISVGALQ
HLASLMRQWRRNDEAESYIRQALSSQVRLHDSNHPDTLSIKEDLLEILSE
KDTISEDEVFQFRRLDELRARLGPKHPKTLEAMTSLANYLELEDKLSEAG
ALYREIMRTMTEQLGADNDLRLTAVKALASVLHREGKLDASERLFREAFA
IERTKLGEGHSTTLDTMDNLCTVLNDNGQLEEADKLSLKCVKCSENSLGK
DHQETLTFAHNRAQLLFGQERGQEAKQLLRDVVRRHSSILGNSHPDTIRV
SANLGLMIAELGDLADGLSIVEAAVRSATGSLEENHPMALYAEDIRKALS
EAIQKSDK*

mRNA from alignment at NODE_32_length_72862_cov_4.436877:46473..48749+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10032.t1 ID=Gcaud10032.t1|Name=Gcaud10032.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2277bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:46473..48749+ (Gracilaria caudata M_176_S67 male)
ATGGAATCCACTTCCTCTGCAACTACAATGACGGACTTCGACACATGGGT
GGAAAGCCACAACGGGGCGCCCTCAGTCTCTGACCAGATCCAACTCGCCA
AAGAACTCTGTGACCGGGCGGTTTCGGGCGAGAGTGTGCATATGCGCCGC
ACCTCCATTGCGAAACTTGGGGGTCATCCAAGTTTTAGTGCTCAGGCAGA
ATTCCCGCTTGTTTCGTGGAAAGGCGTTAGTGCGCGTTGGTTTCATCGAG
TGTTCATGGAAACAAGAGAACTGCAGATGTTGCGGTCGTTTGGATGTCGT
ATGTGGTTCGTGCGCAATCGGTGCATTACCGAGATACTTCGCCGTCGTGG
AGTGACGTCGGGTGGGTCGGTCATAGATCACATGTCCAAACTGAGCGATC
AATCCCATGGCAACTCGCAAATTACCACCTTAAACCCCGAATCCACCACC
GCAGCTGTGGATGGCGAAGCTGACACAACAGAAGAGGCATCCTGCTTCAT
TTCATACACTGGTGAGATGCCATTGGCGAAGTTTAGCGAACTGATCGAGC
ACGAAAGCCTCGCCAATAAGCGGTTGTGGATGGATGTGATCTGTGTATGT
CAGTTTTCGTGGACTGAGCGGAAGGATGAGGAAATGAAGCAGTTCAAACA
GGGATTTCTGTACGAACTACGCAATCGGATAGGCTCCATCGGAACGACTG
CGCTCCTGGTGAGCCGCTGGGATGACTTGATGGTTACACTCGGTAAGATA
TGGGTACTATGGGAGATCTTTTCGACCGTCAATGGCGAGGCGTCGCTTGA
CGTACTGTTCACTAAGCCGGAAGAGGCACGGTTCATCGAAGACGTCGTGC
GAACGACTGGCGGGCTGGAGAGAATCGATGACTCCGTTTCGAAAGTGGAT
GCAAACAACGCGTGGTCGTTTGTGCCAGAGGACAGAAGCATGATCCTCAA
CCTGATGGAGGAGAGCGACGGTGTGTTCAACGTGAACAAGACGGTTCTGA
AATGTTTACGCACATGGTTTGTCAGCAAGGCGGAAGATTTCTACAATCGC
CTGGAGCAACAAGGGGAAAACGTCGACCTGTACCGTGGTACTCTCATCTC
GTTGCACATGAACTTCGGTGACATTGCGACTGCATTGCGGATGGGACGTG
AAAAAATTGAGAGTGTCGCCAACAAGTTTGGGGAATCACATGAACTTACG
TTAACAGCCATGAACCAACTGGCGCTCACGCTGCAATACGATGGGATGCC
ATCGAGCATGAACGAGGCTGAGATGCTGCTGAAAGACGTGCTGAAGAAAT
GTGAAGTACAGTTCGGCCAGGACCATGACATCTCCGTGGGAGCTCTTCAA
CATCTGGCTTCTCTGATGCGGCAGTGGAGGCGTAACGATGAGGCTGAATC
GTACATTCGCCAGGCGCTATCGTCACAAGTGCGGCTGCACGATAGCAATC
ACCCGGACACGTTATCAATCAAAGAAGACCTTCTAGAGATTCTATCCGAA
AAGGATACTATTTCTGAGGACGAGGTCTTTCAGTTCCGAAGACTCGACGA
GCTGCGGGCTCGGCTCGGGCCGAAGCACCCCAAAACACTGGAGGCCATGA
CCTCTCTCGCGAACTATCTGGAGCTAGAGGACAAGCTGTCGGAAGCCGGA
GCACTTTACCGTGAGATCATGCGCACGATGACAGAGCAGTTAGGAGCTGA
TAATGATCTGAGGCTGACAGCTGTCAAAGCTCTGGCGTCAGTTCTTCACC
GCGAAGGCAAGCTGGACGCTTCCGAACGCTTATTCCGCGAGGCGTTTGCC
ATTGAAAGAACGAAGCTCGGTGAAGGGCACTCTACCACACTGGACACGAT
GGATAATTTATGTACCGTGCTCAACGATAACGGGCAGCTGGAAGAGGCCG
ACAAGCTTTCTCTGAAATGTGTAAAGTGCAGTGAAAACAGTCTAGGCAAG
GATCATCAGGAAACGTTGACGTTTGCTCACAATAGAGCACAGCTGCTTTT
CGGACAGGAAAGAGGACAAGAGGCTAAACAACTCCTGCGTGACGTAGTGC
GTCGTCATAGCTCCATACTCGGCAATTCACACCCTGATACAATCCGAGTT
TCAGCCAACCTGGGGTTGATGATAGCGGAGCTCGGTGACTTGGCCGATGG
ACTCTCAATTGTTGAGGCAGCGGTCCGCAGTGCAACTGGTTCTCTAGAGG
AAAACCATCCAATGGCTCTTTACGCGGAAGACATTCGCAAAGCATTGAGT
GAAGCCATTCAGAAATCGGACAAATGA

Coding sequence (CDS) from alignment at NODE_32_length_72862_cov_4.436877:46473..48749+

>Gcaud10032.t1 ID=Gcaud10032.t1|Name=Gcaud10032.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2277bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:46473..48749+ (Gracilaria caudata M_176_S67 male)
ATGGAATCCACTTCCTCTGCAACTACAATGACGGACTTCGACACATGGGT
GGAAAGCCACAACGGGGCGCCCTCAGTCTCTGACCAGATCCAACTCGCCA
AAGAACTCTGTGACCGGGCGGTTTCGGGCGAGAGTGTGCATATGCGCCGC
ACCTCCATTGCGAAACTTGGGGGTCATCCAAGTTTTAGTGCTCAGGCAGA
ATTCCCGCTTGTTTCGTGGAAAGGCGTTAGTGCGCGTTGGTTTCATCGAG
TGTTCATGGAAACAAGAGAACTGCAGATGTTGCGGTCGTTTGGATGTCGT
ATGTGGTTCGTGCGCAATCGGTGCATTACCGAGATACTTCGCCGTCGTGG
AGTGACGTCGGGTGGGTCGGTCATAGATCACATGTCCAAACTGAGCGATC
AATCCCATGGCAACTCGCAAATTACCACCTTAAACCCCGAATCCACCACC
GCAGCTGTGGATGGCGAAGCTGACACAACAGAAGAGGCATCCTGCTTCAT
TTCATACACTGGTGAGATGCCATTGGCGAAGTTTAGCGAACTGATCGAGC
ACGAAAGCCTCGCCAATAAGCGGTTGTGGATGGATGTGATCTGTGTATGT
CAGTTTTCGTGGACTGAGCGGAAGGATGAGGAAATGAAGCAGTTCAAACA
GGGATTTCTGTACGAACTACGCAATCGGATAGGCTCCATCGGAACGACTG
CGCTCCTGGTGAGCCGCTGGGATGACTTGATGGTTACACTCGGTAAGATA
TGGGTACTATGGGAGATCTTTTCGACCGTCAATGGCGAGGCGTCGCTTGA
CGTACTGTTCACTAAGCCGGAAGAGGCACGGTTCATCGAAGACGTCGTGC
GAACGACTGGCGGGCTGGAGAGAATCGATGACTCCGTTTCGAAAGTGGAT
GCAAACAACGCGTGGTCGTTTGTGCCAGAGGACAGAAGCATGATCCTCAA
CCTGATGGAGGAGAGCGACGGTGTGTTCAACGTGAACAAGACGGTTCTGA
AATGTTTACGCACATGGTTTGTCAGCAAGGCGGAAGATTTCTACAATCGC
CTGGAGCAACAAGGGGAAAACGTCGACCTGTACCGTGGTACTCTCATCTC
GTTGCACATGAACTTCGGTGACATTGCGACTGCATTGCGGATGGGACGTG
AAAAAATTGAGAGTGTCGCCAACAAGTTTGGGGAATCACATGAACTTACG
TTAACAGCCATGAACCAACTGGCGCTCACGCTGCAATACGATGGGATGCC
ATCGAGCATGAACGAGGCTGAGATGCTGCTGAAAGACGTGCTGAAGAAAT
GTGAAGTACAGTTCGGCCAGGACCATGACATCTCCGTGGGAGCTCTTCAA
CATCTGGCTTCTCTGATGCGGCAGTGGAGGCGTAACGATGAGGCTGAATC
GTACATTCGCCAGGCGCTATCGTCACAAGTGCGGCTGCACGATAGCAATC
ACCCGGACACGTTATCAATCAAAGAAGACCTTCTAGAGATTCTATCCGAA
AAGGATACTATTTCTGAGGACGAGGTCTTTCAGTTCCGAAGACTCGACGA
GCTGCGGGCTCGGCTCGGGCCGAAGCACCCCAAAACACTGGAGGCCATGA
CCTCTCTCGCGAACTATCTGGAGCTAGAGGACAAGCTGTCGGAAGCCGGA
GCACTTTACCGTGAGATCATGCGCACGATGACAGAGCAGTTAGGAGCTGA
TAATGATCTGAGGCTGACAGCTGTCAAAGCTCTGGCGTCAGTTCTTCACC
GCGAAGGCAAGCTGGACGCTTCCGAACGCTTATTCCGCGAGGCGTTTGCC
ATTGAAAGAACGAAGCTCGGTGAAGGGCACTCTACCACACTGGACACGAT
GGATAATTTATGTACCGTGCTCAACGATAACGGGCAGCTGGAAGAGGCCG
ACAAGCTTTCTCTGAAATGTGTAAAGTGCAGTGAAAACAGTCTAGGCAAG
GATCATCAGGAAACGTTGACGTTTGCTCACAATAGAGCACAGCTGCTTTT
CGGACAGGAAAGAGGACAAGAGGCTAAACAACTCCTGCGTGACGTAGTGC
GTCGTCATAGCTCCATACTCGGCAATTCACACCCTGATACAATCCGAGTT
TCAGCCAACCTGGGGTTGATGATAGCGGAGCTCGGTGACTTGGCCGATGG
ACTCTCAATTGTTGAGGCAGCGGTCCGCAGTGCAACTGGTTCTCTAGAGG
AAAACCATCCAATGGCTCTTTACGCGGAAGACATTCGCAAAGCATTGAGT
GAAGCCATTCAGAAATCGGACAAATGA