Gcaud10029.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10029.t1
Unique Name	Gcaud10029.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	234

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_32_length_72862_cov_4.436877	contig	NODE_32_length_72862_cov_4.436877:34122..34823 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005707833.1
PFAMs	zf-CCCH,zf-CCCH_2,zf-CCHC
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K14404
KEGG Pathway	ko03015,ko05164,map03015,map05164
Evalue	3.84e-59
EggNOG OGs	COG5084@1\|root,KOG1040@2759\|Eukaryota
Description	pre-mRNA cleavage required for polyadenylation
COG category	L
BRITE	ko00000,ko00001,ko03019,ko03021

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10029	Gcaud10029	Gracilaria caudata M_176_S67 male	gene	NODE_32_length_72862_cov_4.436877 34122..34823 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10029.t1.stop1	Gcaud10029.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_32_length_72862_cov_4.436877 34122..34124 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10029.t1.CDS1	Gcaud10029.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_32_length_72862_cov_4.436877 34122..34823 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10029.t1.exon1	Gcaud10029.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_32_length_72862_cov_4.436877 34122..34823 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10029.t1.start1	Gcaud10029.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_32_length_72862_cov_4.436877 34821..34823 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10029.t1	Gcaud10029.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_32_length_72862_cov_4.436877 34122..34823 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_32_length_72862_cov_4.436877:34122..34823-
coding sequence from alignment at NODE_32_length_72862_cov_4.436877:34122..34823-

mRNA sequence

>Gcaud10029.t1 ID=Gcaud10029.t1|Name=Gcaud10029.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=234bp
MPAPVAVPSALVPGESEIAPHGRQVFKFEVENGLDQVRRLDETAWGTSTD
LCPDFYSENGCTRGERCQWRHARNDRLIVCKHYLRGLCKKQDMCDYLHSV
DYLRMPECFFFSKYGECSNNECPYRHVDPEKKRNECPYYARGFCRHGPKC
RHRHVKKVACTNYLAGFCKDGPDCVFGHARFEIPRTADDEDMFSNGIDRF
GFGRSRGPAPRLITHENGMLATAAGTMPHGGRR*

spliced messenger RNA

>Gcaud10029.t1 ID=Gcaud10029.t1|Name=Gcaud10029.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=702bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:34122..34823- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGCCCCAGTCGCAGTTCCAAGTGCCCTAGTTCCCGGGGAATCAGA
GATAGCTCCACATGGAAGGCAAGTATTCAAGTTCGAAGTCGAAAACGGTC
TGGACCAAGTGCGCAGACTAGATGAAACAGCGTGGGGAACTTCCACAGAC
TTGTGTCCAGACTTCTACTCGGAAAACGGATGCACGCGTGGAGAGCGCTG
CCAATGGCGTCACGCGCGAAACGACCGTTTGATTGTCTGCAAACATTATT
TGAGGGGGCTGTGCAAGAAACAGGATATGTGTGATTATTTGCATTCCGTG
GATTATCTTAGAATGCCCGAATGCTTCTTCTTTTCAAAGTACGGCGAGTG
TTCGAATAACGAATGTCCGTATCGTCACGTTGACCCTGAGAAGAAGAGGA
ATGAATGCCCTTACTACGCGAGGGGATTTTGCAGACACGGTCCCAAATGT
CGCCATCGACACGTGAAGAAGGTCGCATGTACAAACTATCTGGCTGGGTT
CTGTAAGGACGGACCAGACTGCGTATTTGGGCACGCCCGCTTCGAGATTC
CCCGCACGGCTGATGACGAGGATATGTTCAGCAACGGTATAGATCGGTTT
GGATTTGGCAGATCGCGGGGCCCTGCCCCAAGACTCATCACTCACGAGAA
TGGAATGCTTGCTACTGCTGCCGGTACAATGCCGCATGGCGGCCGGAGAT
GA

protein sequence of Gcaud10029.t1

>Gcaud10029.t1 ID=Gcaud10029.t1|Name=Gcaud10029.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=234bp
MPAPVAVPSALVPGESEIAPHGRQVFKFEVENGLDQVRRLDETAWGTSTD
LCPDFYSENGCTRGERCQWRHARNDRLIVCKHYLRGLCKKQDMCDYLHSV
DYLRMPECFFFSKYGECSNNECPYRHVDPEKKRNECPYYARGFCRHGPKC
RHRHVKKVACTNYLAGFCKDGPDCVFGHARFEIPRTADDEDMFSNGIDRF
GFGRSRGPAPRLITHENGMLATAAGTMPHGGRR*

mRNA from alignment at NODE_32_length_72862_cov_4.436877:34122..34823-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10029.t1 ID=Gcaud10029.t1|Name=Gcaud10029.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=702bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:34122..34823- (Gracilaria caudata M_176_S67 male)
ATGCCTGCCCCAGTCGCAGTTCCAAGTGCCCTAGTTCCCGGGGAATCAGA
GATAGCTCCACATGGAAGGCAAGTATTCAAGTTCGAAGTCGAAAACGGTC
TGGACCAAGTGCGCAGACTAGATGAAACAGCGTGGGGAACTTCCACAGAC
TTGTGTCCAGACTTCTACTCGGAAAACGGATGCACGCGTGGAGAGCGCTG
CCAATGGCGTCACGCGCGAAACGACCGTTTGATTGTCTGCAAACATTATT
TGAGGGGGCTGTGCAAGAAACAGGATATGTGTGATTATTTGCATTCCGTG
GATTATCTTAGAATGCCCGAATGCTTCTTCTTTTCAAAGTACGGCGAGTG
TTCGAATAACGAATGTCCGTATCGTCACGTTGACCCTGAGAAGAAGAGGA
ATGAATGCCCTTACTACGCGAGGGGATTTTGCAGACACGGTCCCAAATGT
CGCCATCGACACGTGAAGAAGGTCGCATGTACAAACTATCTGGCTGGGTT
CTGTAAGGACGGACCAGACTGCGTATTTGGGCACGCCCGCTTCGAGATTC
CCCGCACGGCTGATGACGAGGATATGTTCAGCAACGGTATAGATCGGTTT
GGATTTGGCAGATCGCGGGGCCCTGCCCCAAGACTCATCACTCACGAGAA
TGGAATGCTTGCTACTGCTGCCGGTACAATGCCGCATGGCGGCCGGAGAT
GA

Coding sequence (CDS) from alignment at NODE_32_length_72862_cov_4.436877:34122..34823-

>Gcaud10029.t1 ID=Gcaud10029.t1|Name=Gcaud10029.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=702bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:34122..34823- (Gracilaria caudata M_176_S67 male)
ATGCCTGCCCCAGTCGCAGTTCCAAGTGCCCTAGTTCCCGGGGAATCAGA
GATAGCTCCACATGGAAGGCAAGTATTCAAGTTCGAAGTCGAAAACGGTC
TGGACCAAGTGCGCAGACTAGATGAAACAGCGTGGGGAACTTCCACAGAC
TTGTGTCCAGACTTCTACTCGGAAAACGGATGCACGCGTGGAGAGCGCTG
CCAATGGCGTCACGCGCGAAACGACCGTTTGATTGTCTGCAAACATTATT
TGAGGGGGCTGTGCAAGAAACAGGATATGTGTGATTATTTGCATTCCGTG
GATTATCTTAGAATGCCCGAATGCTTCTTCTTTTCAAAGTACGGCGAGTG
TTCGAATAACGAATGTCCGTATCGTCACGTTGACCCTGAGAAGAAGAGGA
ATGAATGCCCTTACTACGCGAGGGGATTTTGCAGACACGGTCCCAAATGT
CGCCATCGACACGTGAAGAAGGTCGCATGTACAAACTATCTGGCTGGGTT
CTGTAAGGACGGACCAGACTGCGTATTTGGGCACGCCCGCTTCGAGATTC
CCCGCACGGCTGATGACGAGGATATGTTCAGCAACGGTATAGATCGGTTT
GGATTTGGCAGATCGCGGGGCCCTGCCCCAAGACTCATCACTCACGAGAA
TGGAATGCTTGCTACTGCTGCCGGTACAATGCCGCATGGCGGCCGGAGAT
GA