Gcaud10025.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10025.t1
Unique NameGcaud10025.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length255
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_32_length_72862_cov_4.436877contigNODE_32_length_72862_cov_4.436877:27335..28188 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704935.1
Preferred nameADK1
PFAMsADK,ADK_lid
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00939
KEGG ReactionR00127,R01547,R11319
KEGG Pathwayko00230,ko00730,ko01100,ko01110,ko01130,map00230,map00730,map01100,map01110,map01130
KEGG ModuleM00049
GOsGO:0000166,GO:0000287,GO:0001889,GO:0002244,GO:0002376,GO:0002520,GO:0002521,GO:0003674,GO:0003824,GO:0004017,GO:0005488,GO:0005507,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0005773,GO:0005774,GO:0005829,GO:0005929,GO:0006091,GO:0006119,GO:0006139,GO:0006144,GO:0006163,GO:0006164,GO:0006166,GO:0006172,GO:0006259,GO:0006260,GO:0006261,GO:0006270,GO:0006412,GO:0006518,GO:0006629,GO:0006644,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008144,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009112,GO:0009116,GO:0009117,GO:0009119,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009133,GO:0009135,GO:0009136,GO:0009141,GO:0009144,GO:0009150,GO:0009151,GO:0009152,GO:0009156,GO:0009161,GO:0009163,GO:0009165,GO:0009167,GO:0009168,GO:0009179,GO:0009180,GO:0009185,GO:0009188,GO:0009199,GO:0009200,GO:0009205,GO:0009215,GO:0009259,GO:0009260,GO:0009262,GO:0009394,GO:0009719,GO:0009725,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010467,GO:0010646,GO:0010648,GO:0015949,GO:0015950,GO:0015951,GO:0016020,GO:0016070,GO:0016208,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0017076,GO:0017144,GO:0018130,GO:0019205,GO:0019438,GO:0019538,GO:0019637,GO:0019692,GO:0019693,GO:0019866,GO:0023051,GO:0023057,GO:0030097,GO:0030154,GO:0030554,GO:0031090,GO:0031514,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032878,GO:0034404,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0036094,GO:0036126,GO:0042221,GO:0042278,GO:0042451,GO:0042455,GO:0042995,GO:0043043,GO:0043094,GO:0043101,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043174,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044437,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0046031,GO:0046033,GO:0046034,GO:0046060,GO:0046083,GO:0046128,GO:0046129,GO:0046390,GO:0046483,GO:0046686,GO:0046872,GO:0046914,GO:0046940,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048583,GO:0048585,GO:0048731,GO:0048732,GO:0048856,GO:0048863,GO:0048869,GO:0050145,GO:0050789,GO:0050794,GO:0050896,GO:0055086,GO:0060218,GO:0060322,GO:0061008,GO:0065007,GO:0070013,GO:0071704,GO:0072521,GO:0072522,GO:0090036,GO:0090038,GO:0090304,GO:0090407,GO:0097066,GO:0097159,GO:0097223,GO:0097226,GO:0097367,GO:0097729,GO:0098588,GO:0098805,GO:0120025,GO:0120038,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901657,GO:1901659,GO:1902531,GO:1902532,GO:2000114
Evalue1.29e-102
EggNOG OGsCOG0563@1|root,KOG3078@2759|Eukaryota
EC2.7.4.3
Descriptionadenylate kinase activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10025Gcaud10025Gracilaria caudata M_176_S67 malegeneNODE_32_length_72862_cov_4.436877 27335..28188 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10025.t1Gcaud10025.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_32_length_72862_cov_4.436877 27335..28188 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10025.t1.stop1Gcaud10025.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_32_length_72862_cov_4.436877 27335..27337 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10025.t1.CDS1Gcaud10025.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_32_length_72862_cov_4.436877 27335..27361 -
Gcaud10025.t1.CDS2Gcaud10025.t1.CDS2Gracilaria caudata M_176_S67 maleCDSNODE_32_length_72862_cov_4.436877 27451..28188 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10025.t1.exon1Gcaud10025.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_32_length_72862_cov_4.436877 27335..27361 -
Gcaud10025.t1.exon2Gcaud10025.t1.exon2Gracilaria caudata M_176_S67 maleexonNODE_32_length_72862_cov_4.436877 27451..28188 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10025.t1.intron1Gcaud10025.t1.intron1Gracilaria caudata M_176_S67 maleintronNODE_32_length_72862_cov_4.436877 27362..27450 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10025.t1.start1Gcaud10025.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_32_length_72862_cov_4.436877 28186..28188 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10025.t1 ID=Gcaud10025.t1|Name=Gcaud10025.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=255bp
MDQVAPESVLNGVLQQLPTPMLVAEIERRLAQSKPDERKHIILIGPPGSG
KGTQAPRLQEEHCLCHLATGDMLRAAVKAGTELGKQAKKVMDAGELVSDE
IVVGLIKENISTKACNKGFILDGFPRTVEQAKKLDSMLQDNGMKGVDSVI
NFQIEDELLVKRITGRLFHPASGRSYHAEFNPPKSPMKDDITGEDLIRRS
DDNEETLKKRLDAFHVKTLPVLDYYKSAGILHAIDASRPIAEVNQLFCDK
ALRK*
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spliced messenger RNA

>Gcaud10025.t1 ID=Gcaud10025.t1|Name=Gcaud10025.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=765bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:27335..28188- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCAAGTGGCACCAGAATCGGTTCTCAATGGCGTTCTGCAGCAGTT
GCCCACGCCCATGTTAGTAGCGGAGATCGAACGTCGTCTCGCCCAGTCCA
AACCGGACGAGAGAAAGCACATCATTTTAATTGGTCCTCCAGGGTCTGGA
AAGGGTACTCAGGCGCCTCGTCTCCAGGAGGAGCATTGTCTTTGTCACTT
GGCAACTGGCGATATGCTCCGTGCGGCTGTGAAGGCTGGTACCGAACTCG
GAAAGCAAGCGAAGAAAGTTATGGATGCGGGTGAGCTTGTGTCCGACGAA
ATCGTGGTTGGACTGATCAAGGAGAACATCAGCACCAAAGCCTGTAATAA
GGGATTCATTCTTGATGGCTTCCCAAGGACCGTAGAGCAGGCAAAGAAAC
TTGACAGCATGCTTCAGGATAATGGCATGAAGGGTGTTGACTCCGTAATC
AACTTTCAGATCGAAGACGAGTTGTTAGTTAAGAGGATTACAGGTCGCCT
TTTCCATCCGGCGAGCGGTAGAAGTTATCACGCTGAATTCAACCCGCCCA
AGTCTCCAATGAAGGATGACATTACTGGAGAAGATCTCATCCGAAGGAGC
GATGACAATGAAGAAACACTGAAGAAAAGGTTGGACGCATTCCATGTCAA
GACATTGCCTGTTTTGGATTACTACAAGAGCGCAGGTATTCTACATGCCA
TTGATGCTTCGCGACCTATTGCTGAGGTTAACCAATTGTTTTGCGACAAG
GCTTTACGTAAGTAA
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protein sequence of Gcaud10025.t1

>Gcaud10025.t1 ID=Gcaud10025.t1|Name=Gcaud10025.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=255bp
MDQVAPESVLNGVLQQLPTPMLVAEIERRLAQSKPDERKHIILIGPPGSG
KGTQAPRLQEEHCLCHLATGDMLRAAVKAGTELGKQAKKVMDAGELVSDE
IVVGLIKENISTKACNKGFILDGFPRTVEQAKKLDSMLQDNGMKGVDSVI
NFQIEDELLVKRITGRLFHPASGRSYHAEFNPPKSPMKDDITGEDLIRRS
DDNEETLKKRLDAFHVKTLPVLDYYKSAGILHAIDASRPIAEVNQLFCDK
ALRK*
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mRNA from alignment at NODE_32_length_72862_cov_4.436877:27335..28188-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10025.t1 ID=Gcaud10025.t1|Name=Gcaud10025.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=854bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:27335..28188- (Gracilaria caudata M_176_S67 male)
ATGGATCAAGTGGCACCAGAATCGGTTCTCAATGGCGTTCTGCAGCAGTT
GCCCACGCCCATGTTAGTAGCGGAGATCGAACGTCGTCTCGCCCAGTCCA
AACCGGACGAGAGAAAGCACATCATTTTAATTGGTCCTCCAGGGTCTGGA
AAGGGTACTCAGGCGCCTCGTCTCCAGGAGGAGCATTGTCTTTGTCACTT
GGCAACTGGCGATATGCTCCGTGCGGCTGTGAAGGCTGGTACCGAACTCG
GAAAGCAAGCGAAGAAAGTTATGGATGCGGGTGAGCTTGTGTCCGACGAA
ATCGTGGTTGGACTGATCAAGGAGAACATCAGCACCAAAGCCTGTAATAA
GGGATTCATTCTTGATGGCTTCCCAAGGACCGTAGAGCAGGCAAAGAAAC
TTGACAGCATGCTTCAGGATAATGGCATGAAGGGTGTTGACTCCGTAATC
AACTTTCAGATCGAAGACGAGTTGTTAGTTAAGAGGATTACAGGTCGCCT
TTTCCATCCGGCGAGCGGTAGAAGTTATCACGCTGAATTCAACCCGCCCA
AGTCTCCAATGAAGGATGACATTACTGGAGAAGATCTCATCCGAAGGAGC
GATGACAATGAAGAAACACTGAAGAAAAGGTTGGACGCATTCCATGTCAA
GACATTGCCTGTTTTGGATTACTACAAGAGCGCAGGTATTCTACATGCCA
TTGATGCTTCGCGACCTATTGCTGAGGTTAACCAATTGGTAAGGCAAGCC
GCTGAACAAAAATAGAAGGCTTCGCTCTAGGTATGGGCTCTTTTGGAAGC
TAAGATATTGTTTTATCTGTCAAACAGTTTTGCGACAAGGCTTTACGTAA
GTAA
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Coding sequence (CDS) from alignment at NODE_32_length_72862_cov_4.436877:27335..28188-

>Gcaud10025.t1 ID=Gcaud10025.t1|Name=Gcaud10025.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=765bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:27335..28188- (Gracilaria caudata M_176_S67 male)
ATGGATCAAGTGGCACCAGAATCGGTTCTCAATGGCGTTCTGCAGCAGTT
GCCCACGCCCATGTTAGTAGCGGAGATCGAACGTCGTCTCGCCCAGTCCA
AACCGGACGAGAGAAAGCACATCATTTTAATTGGTCCTCCAGGGTCTGGA
AAGGGTACTCAGGCGCCTCGTCTCCAGGAGGAGCATTGTCTTTGTCACTT
GGCAACTGGCGATATGCTCCGTGCGGCTGTGAAGGCTGGTACCGAACTCG
GAAAGCAAGCGAAGAAAGTTATGGATGCGGGTGAGCTTGTGTCCGACGAA
ATCGTGGTTGGACTGATCAAGGAGAACATCAGCACCAAAGCCTGTAATAA
GGGATTCATTCTTGATGGCTTCCCAAGGACCGTAGAGCAGGCAAAGAAAC
TTGACAGCATGCTTCAGGATAATGGCATGAAGGGTGTTGACTCCGTAATC
AACTTTCAGATCGAAGACGAGTTGTTAGTTAAGAGGATTACAGGTCGCCT
TTTCCATCCGGCGAGCGGTAGAAGTTATCACGCTGAATTCAACCCGCCCA
AGTCTCCAATGAAGGATGACATTACTGGAGAAGATCTCATCCGAAGGAGC
GATGACAATGAAGAAACACTGAAGAAAAGGTTGGACGCATTCCATGTCAA
GACATTGCCTGTTTTGGATTACTACAAGAGCGCAGGTATTCTACATGCCA
TTGATGCTTCGCGACCTATTGCTGAGGTTAACCAATTGTTTTGCGACAAG
GCTTTACGTAAGTAA
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