Gcaud10021.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10021.t1
Unique Name	Gcaud10021.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	755

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_32_length_72862_cov_4.436877	contig	NODE_32_length_72862_cov_4.436877:20012..22276 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10021	Gcaud10021	Gracilaria caudata M_176_S67 male	gene	NODE_32_length_72862_cov_4.436877 20012..22276 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10021.t1.stop1	Gcaud10021.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_32_length_72862_cov_4.436877 20012..20014 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10021.t1.CDS1	Gcaud10021.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_32_length_72862_cov_4.436877 20012..22276 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10021.t1.exon1	Gcaud10021.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_32_length_72862_cov_4.436877 20012..22276 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10021.t1.start1	Gcaud10021.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_32_length_72862_cov_4.436877 22274..22276 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10021.t1	Gcaud10021.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_32_length_72862_cov_4.436877 20012..22276 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_32_length_72862_cov_4.436877:20012..22276-
coding sequence from alignment at NODE_32_length_72862_cov_4.436877:20012..22276-

mRNA sequence

>Gcaud10021.t1 ID=Gcaud10021.t1|Name=Gcaud10021.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=755bp
MVSSQLHAIPILLITLGTVVYAAPLQSHQSHHTKPLSHQLLNASAPYGFT
TRDKVNQTILLSNGAAENRITYILRLRQYEAITAIIHVSTDPTIITATSD
TRQQLLSESQNAINFTLLHEFDGRVGVATYSLLVFTNVTKYRGTGTYTVA
GIVLFSSEQRTPDSIASGINSPGLAFRPLSPENSTDGGTLRLQVEYQPVG
SDITGRPPSLNNVLSRAIVKVKDIMYGTNSTLITYDDSCSLTKSSTKSMD
NSRQPMRCGICFNDSDQSLSLTINPERSGTSVVQISVPDIEVDDEVFETD
IRVFVKKPPVVNPVVLIQPGTKFLLDYFGTEVIYLQMYNIIQPDQPINAT
DFIIDLEMNRYASADISLSSLEQPIQTIAFVVQPPGEEDQAVLNKIQAAL
MALKDSELDSPEQTPEILSTMEPVPTASIRTDQPFLPAKFSLGPFSVENT
NASWIYGEHPMVRMPQADISGPSPIEQLRIGSLPLHAVYVRMGNNEDYYE
SNVHVIIPPSTSLRTAKNVLNNPLLTMFAPNQTAVVSSISQQNESEQVLI
SLFLANYSIPTFSEHKSKQISSALSEAIGKKPDEHMMNGNLTILKANGTG
IQVTYAIPVLKDAEKIARDVQMNKTDVESQVAKAVWIPASRLILVNAMVY
DPSSPSIVDAVSSSGNVLGGLSGPLLAAIIVLVLVALIPLSALCIGYLTA
ATDAEQTQSSSRINGDTSASFARMPPVLRDTLGRATDEEDQDLYGMDDEM
HRNG*

spliced messenger RNA

>Gcaud10021.t1 ID=Gcaud10021.t1|Name=Gcaud10021.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2265bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:20012..22276- (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTCTTCGCAACTCCATGCGATACCAATACTGCTCATCACTCTTGG
CACCGTTGTATACGCTGCACCACTTCAAAGTCACCAAAGTCACCACACTA
AACCTTTGTCCCACCAGCTGCTCAACGCGTCCGCCCCCTATGGCTTCACA
ACCCGCGACAAGGTCAACCAAACCATACTCTTAAGCAATGGCGCCGCCGA
AAATCGGATCACCTATATTCTTCGTTTACGGCAGTACGAAGCGATCACTG
CTATCATCCACGTTTCCACAGACCCAACAATCATCACCGCCACTTCAGAC
ACAAGACAGCAGCTGCTTAGTGAATCGCAGAACGCAATTAATTTCACTCT
GTTGCATGAGTTTGATGGGCGCGTTGGAGTTGCGACCTACAGCTTGCTTG
TCTTCACCAACGTCACCAAATATCGTGGCACGGGTACATATACAGTTGCT
GGCATCGTTTTATTTTCATCGGAACAGCGAACCCCCGATTCAATTGCATC
TGGTATCAATTCCCCGGGGCTTGCATTTAGACCACTATCGCCTGAGAACA
GTACTGATGGCGGAACCCTTCGACTTCAAGTTGAGTACCAGCCGGTTGGG
TCGGATATAACGGGAAGACCACCCTCATTGAATAATGTTCTTTCAAGGGC
TATCGTGAAGGTTAAAGACATCATGTATGGTACCAATTCCACACTCATAA
CCTACGATGACTCTTGCTCTCTCACCAAGTCATCCACGAAATCGATGGAT
AACTCTAGGCAACCCATGCGATGCGGAATCTGTTTTAATGACAGCGACCA
GAGCCTTAGTCTCACAATAAACCCGGAAAGAAGTGGTACCTCTGTCGTCC
AGATCTCGGTGCCAGACATTGAAGTGGACGATGAAGTCTTTGAAACTGAT
ATCAGGGTATTCGTGAAGAAGCCACCTGTGGTGAATCCAGTTGTTCTCAT
TCAGCCTGGTACGAAGTTCCTTCTTGATTACTTTGGTACAGAAGTTATAT
ATCTTCAAATGTACAATATCATACAACCGGATCAGCCGATCAACGCGACA
GACTTCATCATTGACTTGGAGATGAATCGATATGCATCTGCAGACATCTC
TTTGTCAAGCTTAGAGCAGCCCATTCAGACAATTGCTTTCGTCGTTCAGC
CCCCGGGAGAGGAGGACCAAGCAGTTTTGAACAAGATTCAGGCAGCTCTG
ATGGCTTTAAAGGATTCTGAATTAGATTCCCCTGAACAAACCCCGGAAAT
ACTTTCTACAATGGAACCGGTGCCAACTGCGAGTATTCGAACAGATCAAC
CATTTCTCCCCGCCAAGTTCTCGCTAGGTCCCTTTAGTGTCGAAAACACT
AACGCATCATGGATTTACGGCGAGCATCCAATGGTCCGTATGCCACAAGC
GGATATCAGTGGTCCCTCCCCAATCGAGCAGCTGAGAATAGGCTCCCTTC
CACTACATGCTGTGTATGTTCGAATGGGCAATAACGAAGATTACTACGAA
TCGAATGTGCATGTCATCATTCCTCCTTCCACCTCCTTACGAACAGCAAA
GAATGTTCTCAATAACCCTCTTTTGACAATGTTTGCGCCCAATCAAACAG
CTGTTGTTTCTTCAATATCTCAGCAGAATGAGTCAGAACAGGTTCTGATA
TCACTTTTTCTTGCCAACTACAGCATTCCAACATTCTCAGAACACAAATC
AAAACAGATTTCCTCTGCTCTCTCAGAAGCAATTGGAAAAAAGCCGGATG
AGCACATGATGAATGGGAATTTGACGATACTAAAAGCAAATGGTACGGGT
ATTCAAGTCACTTACGCTATTCCAGTCCTGAAAGATGCCGAGAAGATTGC
AAGGGATGTGCAGATGAACAAAACGGATGTCGAAAGCCAGGTGGCCAAAG
CAGTCTGGATTCCCGCCAGCCGATTGATACTGGTAAACGCGATGGTATAT
GATCCGTCATCGCCATCGATAGTTGATGCTGTCAGTAGTTCGGGAAACGT
ATTGGGGGGGCTAAGTGGTCCACTGCTGGCCGCAATTATCGTACTCGTGC
TCGTAGCACTTATACCGCTGTCGGCACTTTGTATCGGGTATCTGACAGCA
GCAACTGATGCAGAGCAGACACAATCATCTTCTCGTATCAATGGTGATAC
GAGCGCATCATTTGCGAGAATGCCACCTGTTCTGAGGGATACTTTAGGAA
GAGCAACAGACGAAGAGGATCAAGATTTGTACGGCATGGACGACGAAATG
CATAGAAATGGTTAA

protein sequence of Gcaud10021.t1

>Gcaud10021.t1 ID=Gcaud10021.t1|Name=Gcaud10021.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=755bp
MVSSQLHAIPILLITLGTVVYAAPLQSHQSHHTKPLSHQLLNASAPYGFT
TRDKVNQTILLSNGAAENRITYILRLRQYEAITAIIHVSTDPTIITATSD
TRQQLLSESQNAINFTLLHEFDGRVGVATYSLLVFTNVTKYRGTGTYTVA
GIVLFSSEQRTPDSIASGINSPGLAFRPLSPENSTDGGTLRLQVEYQPVG
SDITGRPPSLNNVLSRAIVKVKDIMYGTNSTLITYDDSCSLTKSSTKSMD
NSRQPMRCGICFNDSDQSLSLTINPERSGTSVVQISVPDIEVDDEVFETD
IRVFVKKPPVVNPVVLIQPGTKFLLDYFGTEVIYLQMYNIIQPDQPINAT
DFIIDLEMNRYASADISLSSLEQPIQTIAFVVQPPGEEDQAVLNKIQAAL
MALKDSELDSPEQTPEILSTMEPVPTASIRTDQPFLPAKFSLGPFSVENT
NASWIYGEHPMVRMPQADISGPSPIEQLRIGSLPLHAVYVRMGNNEDYYE
SNVHVIIPPSTSLRTAKNVLNNPLLTMFAPNQTAVVSSISQQNESEQVLI
SLFLANYSIPTFSEHKSKQISSALSEAIGKKPDEHMMNGNLTILKANGTG
IQVTYAIPVLKDAEKIARDVQMNKTDVESQVAKAVWIPASRLILVNAMVY
DPSSPSIVDAVSSSGNVLGGLSGPLLAAIIVLVLVALIPLSALCIGYLTA
ATDAEQTQSSSRINGDTSASFARMPPVLRDTLGRATDEEDQDLYGMDDEM
HRNG*

mRNA from alignment at NODE_32_length_72862_cov_4.436877:20012..22276-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10021.t1 ID=Gcaud10021.t1|Name=Gcaud10021.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2265bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:20012..22276- (Gracilaria caudata M_176_S67 male)
ATGGTTTCTTCGCAACTCCATGCGATACCAATACTGCTCATCACTCTTGG
CACCGTTGTATACGCTGCACCACTTCAAAGTCACCAAAGTCACCACACTA
AACCTTTGTCCCACCAGCTGCTCAACGCGTCCGCCCCCTATGGCTTCACA
ACCCGCGACAAGGTCAACCAAACCATACTCTTAAGCAATGGCGCCGCCGA
AAATCGGATCACCTATATTCTTCGTTTACGGCAGTACGAAGCGATCACTG
CTATCATCCACGTTTCCACAGACCCAACAATCATCACCGCCACTTCAGAC
ACAAGACAGCAGCTGCTTAGTGAATCGCAGAACGCAATTAATTTCACTCT
GTTGCATGAGTTTGATGGGCGCGTTGGAGTTGCGACCTACAGCTTGCTTG
TCTTCACCAACGTCACCAAATATCGTGGCACGGGTACATATACAGTTGCT
GGCATCGTTTTATTTTCATCGGAACAGCGAACCCCCGATTCAATTGCATC
TGGTATCAATTCCCCGGGGCTTGCATTTAGACCACTATCGCCTGAGAACA
GTACTGATGGCGGAACCCTTCGACTTCAAGTTGAGTACCAGCCGGTTGGG
TCGGATATAACGGGAAGACCACCCTCATTGAATAATGTTCTTTCAAGGGC
TATCGTGAAGGTTAAAGACATCATGTATGGTACCAATTCCACACTCATAA
CCTACGATGACTCTTGCTCTCTCACCAAGTCATCCACGAAATCGATGGAT
AACTCTAGGCAACCCATGCGATGCGGAATCTGTTTTAATGACAGCGACCA
GAGCCTTAGTCTCACAATAAACCCGGAAAGAAGTGGTACCTCTGTCGTCC
AGATCTCGGTGCCAGACATTGAAGTGGACGATGAAGTCTTTGAAACTGAT
ATCAGGGTATTCGTGAAGAAGCCACCTGTGGTGAATCCAGTTGTTCTCAT
TCAGCCTGGTACGAAGTTCCTTCTTGATTACTTTGGTACAGAAGTTATAT
ATCTTCAAATGTACAATATCATACAACCGGATCAGCCGATCAACGCGACA
GACTTCATCATTGACTTGGAGATGAATCGATATGCATCTGCAGACATCTC
TTTGTCAAGCTTAGAGCAGCCCATTCAGACAATTGCTTTCGTCGTTCAGC
CCCCGGGAGAGGAGGACCAAGCAGTTTTGAACAAGATTCAGGCAGCTCTG
ATGGCTTTAAAGGATTCTGAATTAGATTCCCCTGAACAAACCCCGGAAAT
ACTTTCTACAATGGAACCGGTGCCAACTGCGAGTATTCGAACAGATCAAC
CATTTCTCCCCGCCAAGTTCTCGCTAGGTCCCTTTAGTGTCGAAAACACT
AACGCATCATGGATTTACGGCGAGCATCCAATGGTCCGTATGCCACAAGC
GGATATCAGTGGTCCCTCCCCAATCGAGCAGCTGAGAATAGGCTCCCTTC
CACTACATGCTGTGTATGTTCGAATGGGCAATAACGAAGATTACTACGAA
TCGAATGTGCATGTCATCATTCCTCCTTCCACCTCCTTACGAACAGCAAA
GAATGTTCTCAATAACCCTCTTTTGACAATGTTTGCGCCCAATCAAACAG
CTGTTGTTTCTTCAATATCTCAGCAGAATGAGTCAGAACAGGTTCTGATA
TCACTTTTTCTTGCCAACTACAGCATTCCAACATTCTCAGAACACAAATC
AAAACAGATTTCCTCTGCTCTCTCAGAAGCAATTGGAAAAAAGCCGGATG
AGCACATGATGAATGGGAATTTGACGATACTAAAAGCAAATGGTACGGGT
ATTCAAGTCACTTACGCTATTCCAGTCCTGAAAGATGCCGAGAAGATTGC
AAGGGATGTGCAGATGAACAAAACGGATGTCGAAAGCCAGGTGGCCAAAG
CAGTCTGGATTCCCGCCAGCCGATTGATACTGGTAAACGCGATGGTATAT
GATCCGTCATCGCCATCGATAGTTGATGCTGTCAGTAGTTCGGGAAACGT
ATTGGGGGGGCTAAGTGGTCCACTGCTGGCCGCAATTATCGTACTCGTGC
TCGTAGCACTTATACCGCTGTCGGCACTTTGTATCGGGTATCTGACAGCA
GCAACTGATGCAGAGCAGACACAATCATCTTCTCGTATCAATGGTGATAC
GAGCGCATCATTTGCGAGAATGCCACCTGTTCTGAGGGATACTTTAGGAA
GAGCAACAGACGAAGAGGATCAAGATTTGTACGGCATGGACGACGAAATG
CATAGAAATGGTTAA

Coding sequence (CDS) from alignment at NODE_32_length_72862_cov_4.436877:20012..22276-

>Gcaud10021.t1 ID=Gcaud10021.t1|Name=Gcaud10021.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2265bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:20012..22276- (Gracilaria caudata M_176_S67 male)
ATGGTTTCTTCGCAACTCCATGCGATACCAATACTGCTCATCACTCTTGG
CACCGTTGTATACGCTGCACCACTTCAAAGTCACCAAAGTCACCACACTA
AACCTTTGTCCCACCAGCTGCTCAACGCGTCCGCCCCCTATGGCTTCACA
ACCCGCGACAAGGTCAACCAAACCATACTCTTAAGCAATGGCGCCGCCGA
AAATCGGATCACCTATATTCTTCGTTTACGGCAGTACGAAGCGATCACTG
CTATCATCCACGTTTCCACAGACCCAACAATCATCACCGCCACTTCAGAC
ACAAGACAGCAGCTGCTTAGTGAATCGCAGAACGCAATTAATTTCACTCT
GTTGCATGAGTTTGATGGGCGCGTTGGAGTTGCGACCTACAGCTTGCTTG
TCTTCACCAACGTCACCAAATATCGTGGCACGGGTACATATACAGTTGCT
GGCATCGTTTTATTTTCATCGGAACAGCGAACCCCCGATTCAATTGCATC
TGGTATCAATTCCCCGGGGCTTGCATTTAGACCACTATCGCCTGAGAACA
GTACTGATGGCGGAACCCTTCGACTTCAAGTTGAGTACCAGCCGGTTGGG
TCGGATATAACGGGAAGACCACCCTCATTGAATAATGTTCTTTCAAGGGC
TATCGTGAAGGTTAAAGACATCATGTATGGTACCAATTCCACACTCATAA
CCTACGATGACTCTTGCTCTCTCACCAAGTCATCCACGAAATCGATGGAT
AACTCTAGGCAACCCATGCGATGCGGAATCTGTTTTAATGACAGCGACCA
GAGCCTTAGTCTCACAATAAACCCGGAAAGAAGTGGTACCTCTGTCGTCC
AGATCTCGGTGCCAGACATTGAAGTGGACGATGAAGTCTTTGAAACTGAT
ATCAGGGTATTCGTGAAGAAGCCACCTGTGGTGAATCCAGTTGTTCTCAT
TCAGCCTGGTACGAAGTTCCTTCTTGATTACTTTGGTACAGAAGTTATAT
ATCTTCAAATGTACAATATCATACAACCGGATCAGCCGATCAACGCGACA
GACTTCATCATTGACTTGGAGATGAATCGATATGCATCTGCAGACATCTC
TTTGTCAAGCTTAGAGCAGCCCATTCAGACAATTGCTTTCGTCGTTCAGC
CCCCGGGAGAGGAGGACCAAGCAGTTTTGAACAAGATTCAGGCAGCTCTG
ATGGCTTTAAAGGATTCTGAATTAGATTCCCCTGAACAAACCCCGGAAAT
ACTTTCTACAATGGAACCGGTGCCAACTGCGAGTATTCGAACAGATCAAC
CATTTCTCCCCGCCAAGTTCTCGCTAGGTCCCTTTAGTGTCGAAAACACT
AACGCATCATGGATTTACGGCGAGCATCCAATGGTCCGTATGCCACAAGC
GGATATCAGTGGTCCCTCCCCAATCGAGCAGCTGAGAATAGGCTCCCTTC
CACTACATGCTGTGTATGTTCGAATGGGCAATAACGAAGATTACTACGAA
TCGAATGTGCATGTCATCATTCCTCCTTCCACCTCCTTACGAACAGCAAA
GAATGTTCTCAATAACCCTCTTTTGACAATGTTTGCGCCCAATCAAACAG
CTGTTGTTTCTTCAATATCTCAGCAGAATGAGTCAGAACAGGTTCTGATA
TCACTTTTTCTTGCCAACTACAGCATTCCAACATTCTCAGAACACAAATC
AAAACAGATTTCCTCTGCTCTCTCAGAAGCAATTGGAAAAAAGCCGGATG
AGCACATGATGAATGGGAATTTGACGATACTAAAAGCAAATGGTACGGGT
ATTCAAGTCACTTACGCTATTCCAGTCCTGAAAGATGCCGAGAAGATTGC
AAGGGATGTGCAGATGAACAAAACGGATGTCGAAAGCCAGGTGGCCAAAG
CAGTCTGGATTCCCGCCAGCCGATTGATACTGGTAAACGCGATGGTATAT
GATCCGTCATCGCCATCGATAGTTGATGCTGTCAGTAGTTCGGGAAACGT
ATTGGGGGGGCTAAGTGGTCCACTGCTGGCCGCAATTATCGTACTCGTGC
TCGTAGCACTTATACCGCTGTCGGCACTTTGTATCGGGTATCTGACAGCA
GCAACTGATGCAGAGCAGACACAATCATCTTCTCGTATCAATGGTGATAC
GAGCGCATCATTTGCGAGAATGCCACCTGTTCTGAGGGATACTTTAGGAA
GAGCAACAGACGAAGAGGATCAAGATTTGTACGGCATGGACGACGAAATG
CATAGAAATGGTTAA