Gcaud10019.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10019.t1
Unique Name	Gcaud10019.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	712

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_32_length_72862_cov_4.436877	contig	NODE_32_length_72862_cov_4.436877:14098..16233 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3760.EMJ00131
Preferred name	TPC1
PFAMs	EF-hand_7,Ion_trans
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K16900
KEGG TC	1.A.1.11.13,1.A.1.11.26,1.A.1.11.30
GOs	GO:0000325,GO:0001508,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005245,GO:0005261,GO:0005262,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008324,GO:0009791,GO:0009845,GO:0009889,GO:0009987,GO:0010119,GO:0010565,GO:0010817,GO:0012505,GO:0015075,GO:0015085,GO:0015267,GO:0015318,GO:0016020,GO:0019216,GO:0019217,GO:0019222,GO:0019722,GO:0019932,GO:0022803,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022843,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0031090,GO:0031323,GO:0031326,GO:0032350,GO:0032501,GO:0032502,GO:0034220,GO:0035556,GO:0042304,GO:0042391,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046873,GO:0046885,GO:0046890,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051716,GO:0051899,GO:0055085,GO:0062012,GO:0065007,GO:0065008,GO:0070588,GO:0070838,GO:0071944,GO:0072511,GO:0080090,GO:0080140,GO:0080141,GO:0086010,GO:0090351,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098805
Evalue	5.14e-73
EggNOG OGs	KOG2301@1\|root,KOG2301@2759\|Eukaryota,37IZH@33090\|Viridiplantae,3GG0M@35493\|Streptophyta,4JGFX@91835\|fabids
Description	Two pore calcium channel protein
COG category	PT
BRITE	ko00000,ko04040

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10019	Gcaud10019	Gracilaria caudata M_176_S67 male	gene	NODE_32_length_72862_cov_4.436877 14098..16233 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10019.t1.start1	Gcaud10019.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_32_length_72862_cov_4.436877 14098..14100 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10019.t1.CDS1	Gcaud10019.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_32_length_72862_cov_4.436877 14098..16233 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10019.t1.exon1	Gcaud10019.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_32_length_72862_cov_4.436877 14098..16233 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10019.t1.stop1	Gcaud10019.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_32_length_72862_cov_4.436877 16231..16233 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10019.t1	Gcaud10019.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_32_length_72862_cov_4.436877 14098..16233 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_32_length_72862_cov_4.436877:14098..16233+
coding sequence from alignment at NODE_32_length_72862_cov_4.436877:14098..16233+

mRNA sequence

>Gcaud10019.t1 ID=Gcaud10019.t1|Name=Gcaud10019.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=712bp
MSETEPLVSELSLHERAAWIVDETTRGAAIYKRDAIPRTRLTRDRYLFVE
NTRYIRQAAVIALTLLSFFELPSYCSPQRQCVAPDGSSLFLSGVPYLSPV
MQALINLTLLSILIFFYVYDALYLPRVSLHVFPRGLLILFGALLVDMLYV
ALFSGYPPIRFAPFLRVLLPLFYFHSFRECTFAIYAVLNPFFDIVFIVTI
FTLVFGWIVTLVFHDVPEADRYFGNLTTGLYSAFTSLTTADWPMQIMAVL
DVSRPSSLLFLAFILIGVLMLLNVLLAVVYNAYTGHMEDLVVSKLRDRRN
SLSLAYDVLIEDDGVATLPDVKLLFDELRKNKKHSHIDDEQAQFLFTALD
SDGDETINREEFLGIVDALQLKFVLELESISPVERFFPSLYETESWQRLA
KYVRSKSFSYVIDMVMIANVAVVVFESTMDLREIDTPQSVLFYAGLECAF
SFVYILEMLLKTMSQGFDRYWRDYGNRFDFTVTWLLLAGAIYTLHPYTEN
DRTIVRYLVLLRCLRLFSLLAKLPRFRKLVQVFTILIPASAPLFSFFFLS
IYVFAAAGVELFGGLIYATNPALDPGNEFLVDAFVGNDYWALNFNDMAAG
WQMLFSSVIVAYMTEIPEAIASASRFGQWTKWFFILHFIVNTLIVSNCVL
AFVVDLFVMEDEDDDNELIISDIQSRYGSKRVKVLHNYSTAEYVYRTMFR
DRVQQVLAAAD*

spliced messenger RNA

>Gcaud10019.t1 ID=Gcaud10019.t1|Name=Gcaud10019.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2136bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:14098..16233+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGAGACCGAGCCGCTTGTGTCGGAGCTCAGCCTTCATGAGCGAGC
TGCTTGGATTGTTGATGAGACCACGCGAGGCGCTGCTATCTACAAAAGAG
ATGCCATTCCGCGTACTCGGCTAACGAGGGATCGATATCTATTTGTTGAG
AACACACGTTACATTAGACAGGCCGCCGTTATTGCGTTGACGCTTCTATC
TTTCTTTGAGTTACCTTCCTATTGTTCGCCGCAACGACAATGCGTTGCTC
CAGATGGTTCTTCTCTGTTTCTATCCGGTGTTCCATATTTATCTCCCGTC
ATGCAGGCACTTATCAACTTGACATTATTGTCAATACTCATCTTCTTCTA
CGTATACGATGCCTTGTATCTGCCGCGTGTCTCTCTCCACGTGTTTCCGC
GTGGTCTGCTGATCCTGTTCGGTGCCTTGCTAGTGGACATGCTCTACGTC
GCCCTCTTTTCTGGTTATCCGCCCATTAGATTTGCGCCGTTTCTAAGGGT
TCTCTTACCCCTTTTCTACTTTCATTCGTTTCGGGAATGCACCTTTGCCA
TCTACGCTGTTCTCAATCCCTTCTTCGACATTGTCTTCATTGTTACGATC
TTCACGCTCGTCTTCGGGTGGATTGTTACATTAGTGTTTCATGATGTACC
GGAGGCTGATCGCTACTTTGGGAACCTCACGACGGGTTTATACTCTGCAT
TCACTTCTCTAACTACTGCTGATTGGCCTATGCAGATCATGGCGGTTCTA
GATGTTTCTCGTCCATCATCCTTGCTATTTCTCGCATTCATCCTTATCGG
AGTGCTTATGCTCTTGAATGTGTTGCTGGCCGTTGTGTACAACGCATACA
CCGGCCATATGGAGGACCTGGTCGTCTCCAAACTACGAGATCGTCGCAAC
AGTCTCAGTCTAGCGTACGACGTGCTCATAGAAGATGATGGTGTAGCTAC
TTTGCCTGATGTGAAATTGCTGTTTGATGAGCTGCGGAAGAACAAGAAGC
ATAGTCATATTGACGATGAACAAGCACAATTTCTGTTCACTGCCCTAGAT
AGTGACGGAGACGAAACTATAAATCGGGAGGAGTTCTTGGGTATAGTAGA
CGCTCTTCAACTCAAGTTTGTTTTGGAATTGGAGAGCATTTCGCCGGTGG
AACGCTTCTTTCCGTCTCTGTACGAAACCGAATCTTGGCAGCGACTCGCA
AAATATGTGCGTTCAAAGTCGTTTTCTTATGTGATCGATATGGTGATGAT
TGCGAACGTAGCTGTTGTTGTCTTTGAGAGTACAATGGATCTCAGAGAAA
TTGACACTCCTCAGAGCGTCCTATTCTATGCTGGTTTAGAATGCGCGTTC
TCCTTCGTTTACATTCTGGAAATGCTGCTGAAGACAATGAGTCAAGGTTT
CGACCGGTATTGGCGTGATTATGGGAATCGATTTGATTTCACTGTAACTT
GGCTTTTGCTGGCAGGGGCCATTTATACGCTACACCCGTACACAGAAAAC
GATCGCACAATTGTGCGTTACCTGGTCTTGTTACGGTGCCTCAGGTTGTT
TTCTTTGCTGGCCAAATTACCTCGGTTCCGAAAGCTTGTGCAGGTCTTCA
CTATTCTCATTCCTGCTTCGGCCCCTCTGTTCTCCTTTTTCTTTCTGTCA
ATATATGTCTTTGCAGCAGCGGGTGTTGAACTTTTCGGGGGTTTGATTTA
CGCAACGAACCCTGCTCTTGATCCCGGGAACGAGTTTCTGGTCGACGCAT
TCGTTGGAAATGATTATTGGGCTCTCAATTTCAATGATATGGCAGCTGGA
TGGCAAATGCTGTTCTCGTCAGTGATTGTGGCGTACATGACGGAGATTCC
GGAGGCAATTGCTTCCGCCTCTCGGTTTGGGCAATGGACAAAATGGTTCT
TTATCCTCCATTTTATCGTCAACACTCTCATTGTTTCTAATTGCGTGCTA
GCGTTTGTGGTTGATTTGTTTGTAATGGAAGATGAAGATGACGATAATGA
GTTGATTATTTCTGACATACAAAGTCGATATGGTTCGAAACGTGTGAAGG
TACTACATAACTATAGCACGGCAGAGTATGTGTACCGCACGATGTTCAGG
GATAGAGTTCAGCAGGTGCTTGCGGCTGCAGATTGA

protein sequence of Gcaud10019.t1

>Gcaud10019.t1 ID=Gcaud10019.t1|Name=Gcaud10019.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=712bp
MSETEPLVSELSLHERAAWIVDETTRGAAIYKRDAIPRTRLTRDRYLFVE
NTRYIRQAAVIALTLLSFFELPSYCSPQRQCVAPDGSSLFLSGVPYLSPV
MQALINLTLLSILIFFYVYDALYLPRVSLHVFPRGLLILFGALLVDMLYV
ALFSGYPPIRFAPFLRVLLPLFYFHSFRECTFAIYAVLNPFFDIVFIVTI
FTLVFGWIVTLVFHDVPEADRYFGNLTTGLYSAFTSLTTADWPMQIMAVL
DVSRPSSLLFLAFILIGVLMLLNVLLAVVYNAYTGHMEDLVVSKLRDRRN
SLSLAYDVLIEDDGVATLPDVKLLFDELRKNKKHSHIDDEQAQFLFTALD
SDGDETINREEFLGIVDALQLKFVLELESISPVERFFPSLYETESWQRLA
KYVRSKSFSYVIDMVMIANVAVVVFESTMDLREIDTPQSVLFYAGLECAF
SFVYILEMLLKTMSQGFDRYWRDYGNRFDFTVTWLLLAGAIYTLHPYTEN
DRTIVRYLVLLRCLRLFSLLAKLPRFRKLVQVFTILIPASAPLFSFFFLS
IYVFAAAGVELFGGLIYATNPALDPGNEFLVDAFVGNDYWALNFNDMAAG
WQMLFSSVIVAYMTEIPEAIASASRFGQWTKWFFILHFIVNTLIVSNCVL
AFVVDLFVMEDEDDDNELIISDIQSRYGSKRVKVLHNYSTAEYVYRTMFR
DRVQQVLAAAD*

mRNA from alignment at NODE_32_length_72862_cov_4.436877:14098..16233+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10019.t1 ID=Gcaud10019.t1|Name=Gcaud10019.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=2136bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:14098..16233+ (Gracilaria caudata M_176_S67 male)
ATGAGCGAGACCGAGCCGCTTGTGTCGGAGCTCAGCCTTCATGAGCGAGC
TGCTTGGATTGTTGATGAGACCACGCGAGGCGCTGCTATCTACAAAAGAG
ATGCCATTCCGCGTACTCGGCTAACGAGGGATCGATATCTATTTGTTGAG
AACACACGTTACATTAGACAGGCCGCCGTTATTGCGTTGACGCTTCTATC
TTTCTTTGAGTTACCTTCCTATTGTTCGCCGCAACGACAATGCGTTGCTC
CAGATGGTTCTTCTCTGTTTCTATCCGGTGTTCCATATTTATCTCCCGTC
ATGCAGGCACTTATCAACTTGACATTATTGTCAATACTCATCTTCTTCTA
CGTATACGATGCCTTGTATCTGCCGCGTGTCTCTCTCCACGTGTTTCCGC
GTGGTCTGCTGATCCTGTTCGGTGCCTTGCTAGTGGACATGCTCTACGTC
GCCCTCTTTTCTGGTTATCCGCCCATTAGATTTGCGCCGTTTCTAAGGGT
TCTCTTACCCCTTTTCTACTTTCATTCGTTTCGGGAATGCACCTTTGCCA
TCTACGCTGTTCTCAATCCCTTCTTCGACATTGTCTTCATTGTTACGATC
TTCACGCTCGTCTTCGGGTGGATTGTTACATTAGTGTTTCATGATGTACC
GGAGGCTGATCGCTACTTTGGGAACCTCACGACGGGTTTATACTCTGCAT
TCACTTCTCTAACTACTGCTGATTGGCCTATGCAGATCATGGCGGTTCTA
GATGTTTCTCGTCCATCATCCTTGCTATTTCTCGCATTCATCCTTATCGG
AGTGCTTATGCTCTTGAATGTGTTGCTGGCCGTTGTGTACAACGCATACA
CCGGCCATATGGAGGACCTGGTCGTCTCCAAACTACGAGATCGTCGCAAC
AGTCTCAGTCTAGCGTACGACGTGCTCATAGAAGATGATGGTGTAGCTAC
TTTGCCTGATGTGAAATTGCTGTTTGATGAGCTGCGGAAGAACAAGAAGC
ATAGTCATATTGACGATGAACAAGCACAATTTCTGTTCACTGCCCTAGAT
AGTGACGGAGACGAAACTATAAATCGGGAGGAGTTCTTGGGTATAGTAGA
CGCTCTTCAACTCAAGTTTGTTTTGGAATTGGAGAGCATTTCGCCGGTGG
AACGCTTCTTTCCGTCTCTGTACGAAACCGAATCTTGGCAGCGACTCGCA
AAATATGTGCGTTCAAAGTCGTTTTCTTATGTGATCGATATGGTGATGAT
TGCGAACGTAGCTGTTGTTGTCTTTGAGAGTACAATGGATCTCAGAGAAA
TTGACACTCCTCAGAGCGTCCTATTCTATGCTGGTTTAGAATGCGCGTTC
TCCTTCGTTTACATTCTGGAAATGCTGCTGAAGACAATGAGTCAAGGTTT
CGACCGGTATTGGCGTGATTATGGGAATCGATTTGATTTCACTGTAACTT
GGCTTTTGCTGGCAGGGGCCATTTATACGCTACACCCGTACACAGAAAAC
GATCGCACAATTGTGCGTTACCTGGTCTTGTTACGGTGCCTCAGGTTGTT
TTCTTTGCTGGCCAAATTACCTCGGTTCCGAAAGCTTGTGCAGGTCTTCA
CTATTCTCATTCCTGCTTCGGCCCCTCTGTTCTCCTTTTTCTTTCTGTCA
ATATATGTCTTTGCAGCAGCGGGTGTTGAACTTTTCGGGGGTTTGATTTA
CGCAACGAACCCTGCTCTTGATCCCGGGAACGAGTTTCTGGTCGACGCAT
TCGTTGGAAATGATTATTGGGCTCTCAATTTCAATGATATGGCAGCTGGA
TGGCAAATGCTGTTCTCGTCAGTGATTGTGGCGTACATGACGGAGATTCC
GGAGGCAATTGCTTCCGCCTCTCGGTTTGGGCAATGGACAAAATGGTTCT
TTATCCTCCATTTTATCGTCAACACTCTCATTGTTTCTAATTGCGTGCTA
GCGTTTGTGGTTGATTTGTTTGTAATGGAAGATGAAGATGACGATAATGA
GTTGATTATTTCTGACATACAAAGTCGATATGGTTCGAAACGTGTGAAGG
TACTACATAACTATAGCACGGCAGAGTATGTGTACCGCACGATGTTCAGG
GATAGAGTTCAGCAGGTGCTTGCGGCTGCAGATTGA

Coding sequence (CDS) from alignment at NODE_32_length_72862_cov_4.436877:14098..16233+

>Gcaud10019.t1 ID=Gcaud10019.t1|Name=Gcaud10019.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=2136bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:14098..16233+ (Gracilaria caudata M_176_S67 male)
ATGAGCGAGACCGAGCCGCTTGTGTCGGAGCTCAGCCTTCATGAGCGAGC
TGCTTGGATTGTTGATGAGACCACGCGAGGCGCTGCTATCTACAAAAGAG
ATGCCATTCCGCGTACTCGGCTAACGAGGGATCGATATCTATTTGTTGAG
AACACACGTTACATTAGACAGGCCGCCGTTATTGCGTTGACGCTTCTATC
TTTCTTTGAGTTACCTTCCTATTGTTCGCCGCAACGACAATGCGTTGCTC
CAGATGGTTCTTCTCTGTTTCTATCCGGTGTTCCATATTTATCTCCCGTC
ATGCAGGCACTTATCAACTTGACATTATTGTCAATACTCATCTTCTTCTA
CGTATACGATGCCTTGTATCTGCCGCGTGTCTCTCTCCACGTGTTTCCGC
GTGGTCTGCTGATCCTGTTCGGTGCCTTGCTAGTGGACATGCTCTACGTC
GCCCTCTTTTCTGGTTATCCGCCCATTAGATTTGCGCCGTTTCTAAGGGT
TCTCTTACCCCTTTTCTACTTTCATTCGTTTCGGGAATGCACCTTTGCCA
TCTACGCTGTTCTCAATCCCTTCTTCGACATTGTCTTCATTGTTACGATC
TTCACGCTCGTCTTCGGGTGGATTGTTACATTAGTGTTTCATGATGTACC
GGAGGCTGATCGCTACTTTGGGAACCTCACGACGGGTTTATACTCTGCAT
TCACTTCTCTAACTACTGCTGATTGGCCTATGCAGATCATGGCGGTTCTA
GATGTTTCTCGTCCATCATCCTTGCTATTTCTCGCATTCATCCTTATCGG
AGTGCTTATGCTCTTGAATGTGTTGCTGGCCGTTGTGTACAACGCATACA
CCGGCCATATGGAGGACCTGGTCGTCTCCAAACTACGAGATCGTCGCAAC
AGTCTCAGTCTAGCGTACGACGTGCTCATAGAAGATGATGGTGTAGCTAC
TTTGCCTGATGTGAAATTGCTGTTTGATGAGCTGCGGAAGAACAAGAAGC
ATAGTCATATTGACGATGAACAAGCACAATTTCTGTTCACTGCCCTAGAT
AGTGACGGAGACGAAACTATAAATCGGGAGGAGTTCTTGGGTATAGTAGA
CGCTCTTCAACTCAAGTTTGTTTTGGAATTGGAGAGCATTTCGCCGGTGG
AACGCTTCTTTCCGTCTCTGTACGAAACCGAATCTTGGCAGCGACTCGCA
AAATATGTGCGTTCAAAGTCGTTTTCTTATGTGATCGATATGGTGATGAT
TGCGAACGTAGCTGTTGTTGTCTTTGAGAGTACAATGGATCTCAGAGAAA
TTGACACTCCTCAGAGCGTCCTATTCTATGCTGGTTTAGAATGCGCGTTC
TCCTTCGTTTACATTCTGGAAATGCTGCTGAAGACAATGAGTCAAGGTTT
CGACCGGTATTGGCGTGATTATGGGAATCGATTTGATTTCACTGTAACTT
GGCTTTTGCTGGCAGGGGCCATTTATACGCTACACCCGTACACAGAAAAC
GATCGCACAATTGTGCGTTACCTGGTCTTGTTACGGTGCCTCAGGTTGTT
TTCTTTGCTGGCCAAATTACCTCGGTTCCGAAAGCTTGTGCAGGTCTTCA
CTATTCTCATTCCTGCTTCGGCCCCTCTGTTCTCCTTTTTCTTTCTGTCA
ATATATGTCTTTGCAGCAGCGGGTGTTGAACTTTTCGGGGGTTTGATTTA
CGCAACGAACCCTGCTCTTGATCCCGGGAACGAGTTTCTGGTCGACGCAT
TCGTTGGAAATGATTATTGGGCTCTCAATTTCAATGATATGGCAGCTGGA
TGGCAAATGCTGTTCTCGTCAGTGATTGTGGCGTACATGACGGAGATTCC
GGAGGCAATTGCTTCCGCCTCTCGGTTTGGGCAATGGACAAAATGGTTCT
TTATCCTCCATTTTATCGTCAACACTCTCATTGTTTCTAATTGCGTGCTA
GCGTTTGTGGTTGATTTGTTTGTAATGGAAGATGAAGATGACGATAATGA
GTTGATTATTTCTGACATACAAAGTCGATATGGTTCGAAACGTGTGAAGG
TACTACATAACTATAGCACGGCAGAGTATGTGTACCGCACGATGTTCAGG
GATAGAGTTCAGCAGGTGCTTGCGGCTGCAGATTGA