Gcaud10016.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10016.t1
Unique Name	Gcaud10016.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	368

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_32_length_72862_cov_4.436877	contig	NODE_32_length_72862_cov_4.436877:8504..9756 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10016	Gcaud10016	Gracilaria caudata M_176_S67 male	gene	NODE_32_length_72862_cov_4.436877 8504..9756 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10016.t1	Gcaud10016.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_32_length_72862_cov_4.436877 8504..9756 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10016.t1.start1	Gcaud10016.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_32_length_72862_cov_4.436877 8504..8506 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10016.t1.CDS1	Gcaud10016.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_32_length_72862_cov_4.436877 8504..9110 +
Gcaud10016.t1.CDS2	Gcaud10016.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_32_length_72862_cov_4.436877 9260..9756 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10016.t1.exon1	Gcaud10016.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_32_length_72862_cov_4.436877 8504..9110 +
Gcaud10016.t1.exon2	Gcaud10016.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_32_length_72862_cov_4.436877 9260..9756 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10016.t1.intron1	Gcaud10016.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_32_length_72862_cov_4.436877 9111..9259 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10016.t1.stop1	Gcaud10016.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_32_length_72862_cov_4.436877 9754..9756 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_32_length_72862_cov_4.436877:8504..9756+
coding sequence from alignment at NODE_32_length_72862_cov_4.436877:8504..9756+

mRNA sequence

>Gcaud10016.t1 ID=Gcaud10016.t1|Name=Gcaud10016.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=368bp
MAFLPQPPLPTRGSRSLSPSVAIPTRVDERAAVVVSRRRRVYGVVTVPST
SLTESAVRVETVCSVSKRDEIRRALLQRIQKRNDELKMSDTKREVTFKEQ
LASLHSSKPAPSSAPSSAPSSAPSSSPSSAASSAPSPTPVATPDRPVGPS
NVELDPTHELSSVPERELLAPPVEPELLTQAPQREQISGTPESDEAAVQP
EINTSASQNTGVEELYSPPSSEPKEEPLFDRAFQTIARTVETIVEETRDN
IDDVIESFTEPRKEAIPQDPKKEETSSEEPQEREPKSKEDRSIGKVLLDA
IVEGVPSKEKEARAPPVDKTDLIFLVESGKIKNLTVSKLRRLLSANNLKT
SGRKAELIARLTSYAKQ*

spliced messenger RNA

>Gcaud10016.t1 ID=Gcaud10016.t1|Name=Gcaud10016.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1104bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:8504..9756+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTTCCTCCCGCAGCCGCCGCTTCCCACGCGCGGTTCGCGCTCGCT
GTCACCCTCCGTCGCGATTCCCACGCGCGTCGATGAACGTGCTGCCGTGG
TGGTTAGTCGTCGGCGGCGCGTGTATGGTGTGGTCACTGTCCCATCTACA
TCACTGACCGAGAGTGCCGTGCGCGTCGAAACTGTTTGCTCTGTGTCCAA
GCGCGATGAGATTCGTCGCGCTCTTTTGCAACGAATTCAGAAGCGGAATG
ACGAGCTCAAGATGTCGGACACGAAGCGTGAAGTGACCTTTAAAGAGCAG
CTTGCTTCTTTGCACAGCTCTAAGCCTGCTCCTTCATCGGCTCCCTCATC
GGCTCCTTCATCGGCTCCTTCATCGTCTCCTTCATCTGCAGCTTCATCTG
CTCCTTCGCCCACTCCTGTGGCCACTCCTGACCGTCCTGTTGGGCCCAGC
AACGTGGAGCTTGACCCTACTCATGAGCTGTCCTCAGTCCCGGAACGCGA
ATTGCTGGCACCCCCTGTCGAGCCAGAATTGCTTACGCAGGCACCGCAGC
GCGAGCAGATATCTGGCACGCCTGAATCTGACGAGGCAGCTGTGCAACCT
GAGATAAATACCTCTGCGTCACAGAACACGGGCGTAGAAGAATTGTACTC
CCCTCCATCAAGCGAACCAAAAGAAGAACCTCTGTTCGATAGGGCGTTTC
AAACAATTGCTAGAACAGTTGAAACAATCGTTGAAGAAACTAGAGATAAC
ATTGATGACGTGATCGAAAGCTTTACTGAGCCCAGAAAGGAAGCAATCCC
GCAAGATCCAAAGAAAGAGGAGACATCATCAGAAGAACCTCAAGAGAGGG
AACCTAAGTCAAAAGAAGATCGTTCAATTGGGAAGGTTCTTTTAGATGCA
ATCGTTGAAGGAGTTCCTTCTAAGGAAAAGGAAGCAAGAGCTCCACCGGT
GGACAAAACTGATCTCATTTTCCTTGTAGAGTCTGGAAAAATCAAGAACC
TCACAGTATCTAAGCTACGACGTTTGCTGTCTGCCAACAATCTGAAGACT
TCGGGACGCAAAGCAGAATTAATCGCCAGACTGACATCATATGCCAAACA
GTAA

protein sequence of Gcaud10016.t1

>Gcaud10016.t1 ID=Gcaud10016.t1|Name=Gcaud10016.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=368bp
MAFLPQPPLPTRGSRSLSPSVAIPTRVDERAAVVVSRRRRVYGVVTVPST
SLTESAVRVETVCSVSKRDEIRRALLQRIQKRNDELKMSDTKREVTFKEQ
LASLHSSKPAPSSAPSSAPSSAPSSSPSSAASSAPSPTPVATPDRPVGPS
NVELDPTHELSSVPERELLAPPVEPELLTQAPQREQISGTPESDEAAVQP
EINTSASQNTGVEELYSPPSSEPKEEPLFDRAFQTIARTVETIVEETRDN
IDDVIESFTEPRKEAIPQDPKKEETSSEEPQEREPKSKEDRSIGKVLLDA
IVEGVPSKEKEARAPPVDKTDLIFLVESGKIKNLTVSKLRRLLSANNLKT
SGRKAELIARLTSYAKQ*

mRNA from alignment at NODE_32_length_72862_cov_4.436877:8504..9756+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10016.t1 ID=Gcaud10016.t1|Name=Gcaud10016.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=1253bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:8504..9756+ (Gracilaria caudata M_176_S67 male)
ATGGCCTTCCTCCCGCAGCCGCCGCTTCCCACGCGCGGTTCGCGCTCGCT
GTCACCCTCCGTCGCGATTCCCACGCGCGTCGATGAACGTGCTGCCGTGG
TGGTTAGTCGTCGGCGGCGCGTGTATGGTGTGGTCACTGTCCCATCTACA
TCACTGACCGAGAGTGCCGTGCGCGTCGAAACTGTTTGCTCTGTGTCCAA
GCGCGATGAGATTCGTCGCGCTCTTTTGCAACGAATTCAGAAGCGGAATG
ACGAGCTCAAGATGTCGGACACGAAGCGTGAAGTGACCTTTAAAGAGCAG
CTTGCTTCTTTGCACAGCTCTAAGCCTGCTCCTTCATCGGCTCCCTCATC
GGCTCCTTCATCGGCTCCTTCATCGTCTCCTTCATCTGCAGCTTCATCTG
CTCCTTCGCCCACTCCTGTGGCCACTCCTGACCGTCCTGTTGGGCCCAGC
AACGTGGAGCTTGACCCTACTCATGAGCTGTCCTCAGTCCCGGAACGCGA
ATTGCTGGCACCCCCTGTCGAGCCAGAATTGCTTACGCAGGCACCGCAGC
GCGAGCAGATATCTGGCACGCCTGAATCTGACGAGGCAGCTGTGCAACCT
GAGATAAGTAAGTAACCGAACATTGCACTAACCGCATCTTAATTCTTCAC
AGACCTGCAGCAAAGGGTGTATCCGCGACCTTAACCATCGTTTGACTTGT
AATAATATCGACGTACGTCATAGACCAATTTAAACTCGAACTAACACCAT
ATCCAGATACCTCTGCGTCACAGAACACGGGCGTAGAAGAATTGTACTCC
CCTCCATCAAGCGAACCAAAAGAAGAACCTCTGTTCGATAGGGCGTTTCA
AACAATTGCTAGAACAGTTGAAACAATCGTTGAAGAAACTAGAGATAACA
TTGATGACGTGATCGAAAGCTTTACTGAGCCCAGAAAGGAAGCAATCCCG
CAAGATCCAAAGAAAGAGGAGACATCATCAGAAGAACCTCAAGAGAGGGA
ACCTAAGTCAAAAGAAGATCGTTCAATTGGGAAGGTTCTTTTAGATGCAA
TCGTTGAAGGAGTTCCTTCTAAGGAAAAGGAAGCAAGAGCTCCACCGGTG
GACAAAACTGATCTCATTTTCCTTGTAGAGTCTGGAAAAATCAAGAACCT
CACAGTATCTAAGCTACGACGTTTGCTGTCTGCCAACAATCTGAAGACTT
CGGGACGCAAAGCAGAATTAATCGCCAGACTGACATCATATGCCAAACAG
TAA

Coding sequence (CDS) from alignment at NODE_32_length_72862_cov_4.436877:8504..9756+

>Gcaud10016.t1 ID=Gcaud10016.t1|Name=Gcaud10016.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=1104bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:8504..9756+ (Gracilaria caudata M_176_S67 male)
ATGGCCTTCCTCCCGCAGCCGCCGCTTCCCACGCGCGGTTCGCGCTCGCT
GTCACCCTCCGTCGCGATTCCCACGCGCGTCGATGAACGTGCTGCCGTGG
TGGTTAGTCGTCGGCGGCGCGTGTATGGTGTGGTCACTGTCCCATCTACA
TCACTGACCGAGAGTGCCGTGCGCGTCGAAACTGTTTGCTCTGTGTCCAA
GCGCGATGAGATTCGTCGCGCTCTTTTGCAACGAATTCAGAAGCGGAATG
ACGAGCTCAAGATGTCGGACACGAAGCGTGAAGTGACCTTTAAAGAGCAG
CTTGCTTCTTTGCACAGCTCTAAGCCTGCTCCTTCATCGGCTCCCTCATC
GGCTCCTTCATCGGCTCCTTCATCGTCTCCTTCATCTGCAGCTTCATCTG
CTCCTTCGCCCACTCCTGTGGCCACTCCTGACCGTCCTGTTGGGCCCAGC
AACGTGGAGCTTGACCCTACTCATGAGCTGTCCTCAGTCCCGGAACGCGA
ATTGCTGGCACCCCCTGTCGAGCCAGAATTGCTTACGCAGGCACCGCAGC
GCGAGCAGATATCTGGCACGCCTGAATCTGACGAGGCAGCTGTGCAACCT
GAGATAAATACCTCTGCGTCACAGAACACGGGCGTAGAAGAATTGTACTC
CCCTCCATCAAGCGAACCAAAAGAAGAACCTCTGTTCGATAGGGCGTTTC
AAACAATTGCTAGAACAGTTGAAACAATCGTTGAAGAAACTAGAGATAAC
ATTGATGACGTGATCGAAAGCTTTACTGAGCCCAGAAAGGAAGCAATCCC
GCAAGATCCAAAGAAAGAGGAGACATCATCAGAAGAACCTCAAGAGAGGG
AACCTAAGTCAAAAGAAGATCGTTCAATTGGGAAGGTTCTTTTAGATGCA
ATCGTTGAAGGAGTTCCTTCTAAGGAAAAGGAAGCAAGAGCTCCACCGGT
GGACAAAACTGATCTCATTTTCCTTGTAGAGTCTGGAAAAATCAAGAACC
TCACAGTATCTAAGCTACGACGTTTGCTGTCTGCCAACAATCTGAAGACT
TCGGGACGCAAAGCAGAATTAATCGCCAGACTGACATCATATGCCAAACA
GTAA