Gcaud10014.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10014.t1
Unique NameGcaud10014.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length121
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_32_length_72862_cov_4.436877contigNODE_32_length_72862_cov_4.436877:6302..6664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S505_21V6.1
PFAMsYL1_C
Max annot lvl35493|Streptophyta
KEGG koko:K11667
Evalue3.43e-23
EggNOG OGsCOG5195@1|root,KOG4137@2759|Eukaryota,37UVX@33090|Viridiplantae,3GIQ6@35493|Streptophyta
Descriptioncomplex subunit
COG categoryS
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10014Gcaud10014Gracilaria caudata M_176_S67 malegeneNODE_32_length_72862_cov_4.436877 6302..6664 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10014.t1.start1Gcaud10014.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_32_length_72862_cov_4.436877 6302..6304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10014.t1.CDS1Gcaud10014.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_32_length_72862_cov_4.436877 6302..6664 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10014.t1.exon1Gcaud10014.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_32_length_72862_cov_4.436877 6302..6664 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10014.t1.stop1Gcaud10014.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_32_length_72862_cov_4.436877 6662..6664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10014.t1Gcaud10014.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_32_length_72862_cov_4.436877 6302..6664 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10014.t1 ID=Gcaud10014.t1|Name=Gcaud10014.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=121bp
MGATVDVGPNKAIMKTKRKRGIYEVMTAKSKSWKSSRSLITNEHFDMMPP
SIATYVNIDAPPSMLPAKKYCDITGLPAKYTDPVTKIRFVSKEAFRKARD
LPDHKVEEFLSLRQAQIRIK*
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spliced messenger RNA

>Gcaud10014.t1 ID=Gcaud10014.t1|Name=Gcaud10014.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=363bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:6302..6664+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGCTACTGTAGACGTTGGACCTAACAAGGCGATAATGAAGACGAA
AAGGAAAAGAGGCATCTATGAGGTAATGACAGCGAAGAGTAAGTCCTGGA
AGAGTTCGAGGTCACTGATTACGAACGAACACTTCGACATGATGCCACCT
AGCATAGCCACATACGTTAACATTGATGCACCGCCTAGTATGCTCCCAGC
AAAAAAGTATTGCGACATCACAGGACTACCAGCAAAGTATACTGACCCAG
TGACCAAGATTCGTTTCGTTTCCAAAGAAGCGTTTCGGAAGGCAAGGGAC
TTGCCAGATCACAAAGTTGAAGAGTTCCTGTCGCTACGTCAGGCACAAAT
AAGAATAAAGTAG
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protein sequence of Gcaud10014.t1

>Gcaud10014.t1 ID=Gcaud10014.t1|Name=Gcaud10014.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=121bp
MGATVDVGPNKAIMKTKRKRGIYEVMTAKSKSWKSSRSLITNEHFDMMPP
SIATYVNIDAPPSMLPAKKYCDITGLPAKYTDPVTKIRFVSKEAFRKARD
LPDHKVEEFLSLRQAQIRIK*
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mRNA from alignment at NODE_32_length_72862_cov_4.436877:6302..6664+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10014.t1 ID=Gcaud10014.t1|Name=Gcaud10014.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=363bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:6302..6664+ (Gracilaria caudata M_176_S67 male)
ATGGGGGCTACTGTAGACGTTGGACCTAACAAGGCGATAATGAAGACGAA
AAGGAAAAGAGGCATCTATGAGGTAATGACAGCGAAGAGTAAGTCCTGGA
AGAGTTCGAGGTCACTGATTACGAACGAACACTTCGACATGATGCCACCT
AGCATAGCCACATACGTTAACATTGATGCACCGCCTAGTATGCTCCCAGC
AAAAAAGTATTGCGACATCACAGGACTACCAGCAAAGTATACTGACCCAG
TGACCAAGATTCGTTTCGTTTCCAAAGAAGCGTTTCGGAAGGCAAGGGAC
TTGCCAGATCACAAAGTTGAAGAGTTCCTGTCGCTACGTCAGGCACAAAT
AAGAATAAAGTAG
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Coding sequence (CDS) from alignment at NODE_32_length_72862_cov_4.436877:6302..6664+

>Gcaud10014.t1 ID=Gcaud10014.t1|Name=Gcaud10014.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=363bp|location=Sequence derived from alignment at NODE_32_length_72862_cov_4.436877:6302..6664+ (Gracilaria caudata M_176_S67 male)
ATGGGGGCTACTGTAGACGTTGGACCTAACAAGGCGATAATGAAGACGAA
AAGGAAAAGAGGCATCTATGAGGTAATGACAGCGAAGAGTAAGTCCTGGA
AGAGTTCGAGGTCACTGATTACGAACGAACACTTCGACATGATGCCACCT
AGCATAGCCACATACGTTAACATTGATGCACCGCCTAGTATGCTCCCAGC
AAAAAAGTATTGCGACATCACAGGACTACCAGCAAAGTATACTGACCCAG
TGACCAAGATTCGTTTCGTTTCCAAAGAAGCGTTTCGGAAGGCAAGGGAC
TTGCCAGATCACAAAGTTGAAGAGTTCCTGTCGCTACGTCAGGCACAAAT
AAGAATAAAGTAG
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