Gcaud10005.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gcaud10005.t1
Unique Name	Gcaud10005.t1
Type	mRNA
Organism	Gracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length	250

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
NODE_985_length_15490_cov_4.049289	contig	NODE_985_length_15490_cov_4.049289:2483..3330 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria caudata M_176_S67 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005702482.1
Preferred name	GOSR1
PFAMs	V-SNARE_C
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K08495
KEGG Pathway	ko04130,map04130
GOs	GO:0000138,GO:0000139,GO:0000149,GO:0001101,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005794,GO:0005795,GO:0005797,GO:0005801,GO:0005802,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0006906,GO:0006996,GO:0008104,GO:0008150,GO:0009719,GO:0009725,GO:0009737,GO:0009987,GO:0010033,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0030133,GO:0031090,GO:0031201,GO:0031224,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032879,GO:0032991,GO:0033036,GO:0033993,GO:0034613,GO:0042147,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048209,GO:0048284,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060341,GO:0060627,GO:0061024,GO:0061025,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0090174,GO:0097305,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:1901700
Evalue	3.36e-31
EggNOG OGs	KOG3208@1\|root,KOG3208@2759\|Eukaryota
Description	regulation of vesicle targeting, to, from or within Golgi
COG category	U
BRITE	ko00000,ko00001,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gcaud10005	Gcaud10005	Gracilaria caudata M_176_S67 male	gene	NODE_985_length_15490_cov_4.049289 2483..3330 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10005.t1	Gcaud10005.t1	Gracilaria caudata M_176_S67 male	polypeptide	NODE_985_length_15490_cov_4.049289 2483..3330 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10005.t1.start1	Gcaud10005.t1.start1	Gracilaria caudata M_176_S67 male	start_codon	NODE_985_length_15490_cov_4.049289 2483..2485 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10005.t1.CDS1	Gcaud10005.t1.CDS1	Gracilaria caudata M_176_S67 male	CDS	NODE_985_length_15490_cov_4.049289 2483..2630 +
Gcaud10005.t1.CDS2	Gcaud10005.t1.CDS2	Gracilaria caudata M_176_S67 male	CDS	NODE_985_length_15490_cov_4.049289 2729..3330 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10005.t1.exon1	Gcaud10005.t1.exon1	Gracilaria caudata M_176_S67 male	exon	NODE_985_length_15490_cov_4.049289 2483..2630 +
Gcaud10005.t1.exon2	Gcaud10005.t1.exon2	Gracilaria caudata M_176_S67 male	exon	NODE_985_length_15490_cov_4.049289 2729..3330 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10005.t1.intron1	Gcaud10005.t1.intron1	Gracilaria caudata M_176_S67 male	intron	NODE_985_length_15490_cov_4.049289 2631..2728 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gcaud10005.t1.stop1	Gcaud10005.t1.stop1	Gracilaria caudata M_176_S67 male	stop_codon	NODE_985_length_15490_cov_4.049289 3328..3330 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at NODE_985_length_15490_cov_4.049289:2483..3330+
coding sequence from alignment at NODE_985_length_15490_cov_4.049289:2483..3330+

mRNA sequence

>Gcaud10005.t1 ID=Gcaud10005.t1|Name=Gcaud10005.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=250bp
MAQQSWEMVRKEARRLETDIETKLVEYSKLASSLHTSRSTALDARSSTDD
EGMQRRNTSTKDASMIEQMTNDMQHLLNQLSQTIQTMRELTQQQQQQSGS
KISSTSSHTLQRHTEILRDYTQEFKKTTSMIGTHRERSELLQGLTPSTSA
ANGSQPELEHLYAETNSISNASHNAQFALASGISLKEDLDRQRAMFASMV
ERMESMSEGLPSIHRLIGQIRRKRKRDLLILATVVALLLFLTACWKLAM*

spliced messenger RNA

>Gcaud10005.t1 ID=Gcaud10005.t1|Name=Gcaud10005.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=750bp|location=Sequence derived from alignment at NODE_985_length_15490_cov_4.049289:2483..3330+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCAGCAGTCATGGGAGATGGTGCGCAAGGAGGCGCGTCGTCTGGA
GACCGACATCGAAACCAAGCTGGTGGAGTACAGCAAATTGGCGTCGTCGT
TACACACCTCGCGCTCCACAGCGCTGGACGCGCGCTCCTCCACAGACGAT
GAAGGTATGCAACGTCGAAACACCTCAACCAAAGATGCGTCTATGATAGA
GCAAATGACGAATGACATGCAACATCTTTTAAACCAACTGTCGCAAACAA
TACAAACCATGCGCGAGTTaacacaacaacaacagcaacaaAGCGGCTCC
AAGATCTCCAGCACCAGTTCACACACGTTACAACGACACACCGAGATTCT
TCGCGACTACACACAAGAGTTCAAGAAGACCACAAGCATGATCGGCACCC
ACCGCGAACGCAGCGAGCTCTTGCAGGGCCTCACACCAAGCACGTCCGCC
GCAAACGGCTCACAGCCCGAGCTGGAGCATCTCTACGCGGAGACAAACTC
CATTTCAAACGCCAGTCACAACGCGCAGTTCGCGCTGGCCAGCGGCATCA
GTCTCAAGGAGGACCTGGACCGACAACGCGCCATGTTTGCCAGCATGGTG
GAGCGCATGGAGAGCATGTCGGAGGGTCTGCCCTCCATCCACCGCCTCAT
CGGCCAGATTCGACGCAAACGGAAGAGAGACCTGCTCATCCTGGCCACCG
TGGTGGCGCTGCTGCTGTTCCTCACCGCGTGCTGGAAACTGGCGATGTGA

protein sequence of Gcaud10005.t1

>Gcaud10005.t1 ID=Gcaud10005.t1|Name=Gcaud10005.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=250bp
MAQQSWEMVRKEARRLETDIETKLVEYSKLASSLHTSRSTALDARSSTDD
EGMQRRNTSTKDASMIEQMTNDMQHLLNQLSQTIQTMRELTQQQQQQSGS
KISSTSSHTLQRHTEILRDYTQEFKKTTSMIGTHRERSELLQGLTPSTSA
ANGSQPELEHLYAETNSISNASHNAQFALASGISLKEDLDRQRAMFASMV
ERMESMSEGLPSIHRLIGQIRRKRKRDLLILATVVALLLFLTACWKLAM*

mRNA from alignment at NODE_985_length_15490_cov_4.049289:2483..3330+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gcaud10005.t1 ID=Gcaud10005.t1|Name=Gcaud10005.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=848bp|location=Sequence derived from alignment at NODE_985_length_15490_cov_4.049289:2483..3330+ (Gracilaria caudata M_176_S67 male)
ATGGCGCAGCAGTCATGGGAGATGGTGCGCAAGGAGGCGCGTCGTCTGGA
GACCGACATCGAAACCAAGCTGGTGGAGTACAGCAAATTGGCGTCGTCGT
TACACACCTCGCGCTCCACAGCGCTGGACGCGCGCTCCTCCACAGACGGT
AAGTAGCGCCGCCGCTCTTCTGCGAAAAAAAAAAAAAGCATTCGGACTGA
CATGTAAAAAACCTCGGGGGCAATCAATCACGCGAACACTGTGGAGATGA
AGGTATGCAACGTCGAAACACCTCAACCAAAGATGCGTCTATGATAGAGC
AAATGACGAATGACATGCAACATCTTTTAAACCAACTGTCGCAAACAATA
CAAACCATGCGCGAGTTaacacaacaacaacagcaacaaAGCGGCTCCAA
GATCTCCAGCACCAGTTCACACACGTTACAACGACACACCGAGATTCTTC
GCGACTACACACAAGAGTTCAAGAAGACCACAAGCATGATCGGCACCCAC
CGCGAACGCAGCGAGCTCTTGCAGGGCCTCACACCAAGCACGTCCGCCGC
AAACGGCTCACAGCCCGAGCTGGAGCATCTCTACGCGGAGACAAACTCCA
TTTCAAACGCCAGTCACAACGCGCAGTTCGCGCTGGCCAGCGGCATCAGT
CTCAAGGAGGACCTGGACCGACAACGCGCCATGTTTGCCAGCATGGTGGA
GCGCATGGAGAGCATGTCGGAGGGTCTGCCCTCCATCCACCGCCTCATCG
GCCAGATTCGACGCAAACGGAAGAGAGACCTGCTCATCCTGGCCACCGTG
GTGGCGCTGCTGCTGTTCCTCACCGCGTGCTGGAAACTGGCGATGTGA

Coding sequence (CDS) from alignment at NODE_985_length_15490_cov_4.049289:2483..3330+

>Gcaud10005.t1 ID=Gcaud10005.t1|Name=Gcaud10005.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=750bp|location=Sequence derived from alignment at NODE_985_length_15490_cov_4.049289:2483..3330+ (Gracilaria caudata M_176_S67 male)
ATGGCGCAGCAGTCATGGGAGATGGTGCGCAAGGAGGCGCGTCGTCTGGA
GACCGACATCGAAACCAAGCTGGTGGAGTACAGCAAATTGGCGTCGTCGT
TACACACCTCGCGCTCCACAGCGCTGGACGCGCGCTCCTCCACAGACGAT
GAAGGTATGCAACGTCGAAACACCTCAACCAAAGATGCGTCTATGATAGA
GCAAATGACGAATGACATGCAACATCTTTTAAACCAACTGTCGCAAACAA
TACAAACCATGCGCGAGTTaacacaacaacaacagcaacaaAGCGGCTCC
AAGATCTCCAGCACCAGTTCACACACGTTACAACGACACACCGAGATTCT
TCGCGACTACACACAAGAGTTCAAGAAGACCACAAGCATGATCGGCACCC
ACCGCGAACGCAGCGAGCTCTTGCAGGGCCTCACACCAAGCACGTCCGCC
GCAAACGGCTCACAGCCCGAGCTGGAGCATCTCTACGCGGAGACAAACTC
CATTTCAAACGCCAGTCACAACGCGCAGTTCGCGCTGGCCAGCGGCATCA
GTCTCAAGGAGGACCTGGACCGACAACGCGCCATGTTTGCCAGCATGGTG
GAGCGCATGGAGAGCATGTCGGAGGGTCTGCCCTCCATCCACCGCCTCAT
CGGCCAGATTCGACGCAAACGGAAGAGAGACCTGCTCATCCTGGCCACCG
TGGTGGCGCTGCTGCTGTTCCTCACCGCGTGCTGGAAACTGGCGATGTGA