Gcaud10003.t1 (mRNA) Gracilaria caudata M_176_S67 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGcaud10003.t1
Unique NameGcaud10003.t1
TypemRNA
OrganismGracilaria caudata M_176_S67 male (Gracilaria caudata M_176_S67 male)
Sequence length248
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NODE_985_length_15490_cov_4.049289contigNODE_985_length_15490_cov_4.049289:1049..1792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria caudata M_176_S67 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36080.S2JWE7
PFAMsMoCF_biosynth
Max annot lvl4751|Fungi
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0008150,GO:0008152,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0055114
Evalue8.03e-46
EggNOG OGsCOG0175@1|root,KOG2644@2759|Eukaryota,39U3G@33154|Opisthokonta,3NXB1@4751|Fungi
DescriptionMolybdopterin binding
COG categoryEH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gcaud10003Gcaud10003Gracilaria caudata M_176_S67 malegeneNODE_985_length_15490_cov_4.049289 1049..1792 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10003.t1.start1Gcaud10003.t1.start1Gracilaria caudata M_176_S67 malestart_codonNODE_985_length_15490_cov_4.049289 1049..1051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10003.t1.CDS1Gcaud10003.t1.CDS1Gracilaria caudata M_176_S67 maleCDSNODE_985_length_15490_cov_4.049289 1049..1792 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10003.t1.exon1Gcaud10003.t1.exon1Gracilaria caudata M_176_S67 maleexonNODE_985_length_15490_cov_4.049289 1049..1792 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10003.t1.stop1Gcaud10003.t1.stop1Gracilaria caudata M_176_S67 malestop_codonNODE_985_length_15490_cov_4.049289 1790..1792 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gcaud10003.t1Gcaud10003.t1Gracilaria caudata M_176_S67 malepolypeptideNODE_985_length_15490_cov_4.049289 1049..1792 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gcaud10003.t1 ID=Gcaud10003.t1|Name=Gcaud10003.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=248bp
MTRRKTAAALIIGDEILSGKTLDTNTQTLAKHLVDRGVSLLKTETIRDDI
DTICDTVRRLATHHDLVFTSGGIGPTLDDVTYEGIASAFGLKLVRHEQTV
MRMRQIQPHMVLNEARLRMVMLPEQCDVIWTEGLWVPIAVVQNVYILPGV
PKLFTRMMNAIPRQVFGNVAARERKIVWCDMAEGDLAATLSQTVQQYDVK
IGSYPATNEQNRKLYRTMISVEGDVASIVQEASDVLIRELNGRYGYV*
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spliced messenger RNA

>Gcaud10003.t1 ID=Gcaud10003.t1|Name=Gcaud10003.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=744bp|location=Sequence derived from alignment at NODE_985_length_15490_cov_4.049289:1049..1792+ (Gracilaria caudata M_176_S67 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCGTCGCAAGACAGCGGCCGCGCTCATCATCGGCGACGAGATCCT
GAGCGGCAAGACGCTGGACACCAACACGCAGACGCTGGCAAAACATCTAG
TGGACAGGGGGGTGAGCTTGCTCAAGACGGAGACCATACGCGATGACATC
GACACCATTTGTGACACGGTGAGACGATTGGCGACGCATCATGATCTGGT
GTTTACTAGCGGCGGTATAGGACCCACTTTGGATGACGTTACTTATGAGG
GCATTGCGAGTGCGTTTGGACTCAAGCTTGTTCGTCACGAACAGACGGTT
ATGAGAATGAGACAGATTCAACCGCACATGGTTCTGAATGAAGCACGACT
GAGAATGGTGATGCTGCCAGAACAATGCGACGTGATCTGGACGGAAGGGC
TTTGGGTTCCCATTGCAGTGGTGCAAAACGTCTACATCCTACCGGGCGTT
CCAAAGCTGTTCACACGCATGATGAACGCCATTCCGCGACAGGTGTTCGG
CAACGTGGCCGCAAGAGAACGAAAGATCGTGTGGTGCGACATGGCGGAGG
GCGATTTGGCCGCCACTCTGTCGCAAACGGTGCAACAGTATGACGTCAAA
ATCGGCTCGTATCCCGCCACAAACGAGCAGAACAGAAAGCTGTATCGCAC
CATGATCAGCGTGGAGGGCGACGTGGCGTCGATTGTGCAGGAGGCGAGTG
ACGTGCTGATACGGGAACTGAACGGAAGATATGGGTACGTTTAA
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protein sequence of Gcaud10003.t1

>Gcaud10003.t1 ID=Gcaud10003.t1|Name=Gcaud10003.t1|organism=Gracilaria caudata M_176_S67 male|type=polypeptide|length=248bp
MTRRKTAAALIIGDEILSGKTLDTNTQTLAKHLVDRGVSLLKTETIRDDI
DTICDTVRRLATHHDLVFTSGGIGPTLDDVTYEGIASAFGLKLVRHEQTV
MRMRQIQPHMVLNEARLRMVMLPEQCDVIWTEGLWVPIAVVQNVYILPGV
PKLFTRMMNAIPRQVFGNVAARERKIVWCDMAEGDLAATLSQTVQQYDVK
IGSYPATNEQNRKLYRTMISVEGDVASIVQEASDVLIRELNGRYGYV*
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mRNA from alignment at NODE_985_length_15490_cov_4.049289:1049..1792+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gcaud10003.t1 ID=Gcaud10003.t1|Name=Gcaud10003.t1|organism=Gracilaria caudata M_176_S67 male|type=mRNA|length=744bp|location=Sequence derived from alignment at NODE_985_length_15490_cov_4.049289:1049..1792+ (Gracilaria caudata M_176_S67 male)
ATGACGCGTCGCAAGACAGCGGCCGCGCTCATCATCGGCGACGAGATCCT
GAGCGGCAAGACGCTGGACACCAACACGCAGACGCTGGCAAAACATCTAG
TGGACAGGGGGGTGAGCTTGCTCAAGACGGAGACCATACGCGATGACATC
GACACCATTTGTGACACGGTGAGACGATTGGCGACGCATCATGATCTGGT
GTTTACTAGCGGCGGTATAGGACCCACTTTGGATGACGTTACTTATGAGG
GCATTGCGAGTGCGTTTGGACTCAAGCTTGTTCGTCACGAACAGACGGTT
ATGAGAATGAGACAGATTCAACCGCACATGGTTCTGAATGAAGCACGACT
GAGAATGGTGATGCTGCCAGAACAATGCGACGTGATCTGGACGGAAGGGC
TTTGGGTTCCCATTGCAGTGGTGCAAAACGTCTACATCCTACCGGGCGTT
CCAAAGCTGTTCACACGCATGATGAACGCCATTCCGCGACAGGTGTTCGG
CAACGTGGCCGCAAGAGAACGAAAGATCGTGTGGTGCGACATGGCGGAGG
GCGATTTGGCCGCCACTCTGTCGCAAACGGTGCAACAGTATGACGTCAAA
ATCGGCTCGTATCCCGCCACAAACGAGCAGAACAGAAAGCTGTATCGCAC
CATGATCAGCGTGGAGGGCGACGTGGCGTCGATTGTGCAGGAGGCGAGTG
ACGTGCTGATACGGGAACTGAACGGAAGATATGGGTACGTTTAA
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Coding sequence (CDS) from alignment at NODE_985_length_15490_cov_4.049289:1049..1792+

>Gcaud10003.t1 ID=Gcaud10003.t1|Name=Gcaud10003.t1|organism=Gracilaria caudata M_176_S67 male|type=CDS|length=744bp|location=Sequence derived from alignment at NODE_985_length_15490_cov_4.049289:1049..1792+ (Gracilaria caudata M_176_S67 male)
ATGACGCGTCGCAAGACAGCGGCCGCGCTCATCATCGGCGACGAGATCCT
GAGCGGCAAGACGCTGGACACCAACACGCAGACGCTGGCAAAACATCTAG
TGGACAGGGGGGTGAGCTTGCTCAAGACGGAGACCATACGCGATGACATC
GACACCATTTGTGACACGGTGAGACGATTGGCGACGCATCATGATCTGGT
GTTTACTAGCGGCGGTATAGGACCCACTTTGGATGACGTTACTTATGAGG
GCATTGCGAGTGCGTTTGGACTCAAGCTTGTTCGTCACGAACAGACGGTT
ATGAGAATGAGACAGATTCAACCGCACATGGTTCTGAATGAAGCACGACT
GAGAATGGTGATGCTGCCAGAACAATGCGACGTGATCTGGACGGAAGGGC
TTTGGGTTCCCATTGCAGTGGTGCAAAACGTCTACATCCTACCGGGCGTT
CCAAAGCTGTTCACACGCATGATGAACGCCATTCCGCGACAGGTGTTCGG
CAACGTGGCCGCAAGAGAACGAAAGATCGTGTGGTGCGACATGGCGGAGG
GCGATTTGGCCGCCACTCTGTCGCAAACGGTGCAACAGTATGACGTCAAA
ATCGGCTCGTATCCCGCCACAAACGAGCAGAACAGAAAGCTGTATCGCAC
CATGATCAGCGTGGAGGGCGACGTGGCGTCGATTGTGCAGGAGGCGAGTG
ACGTGCTGATACGGGAACTGAACGGAAGATATGGGTACGTTTAA
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