mRNA_F-serratus_M_contig1037.393.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1037.393.1
Unique NamemRNA_F-serratus_M_contig1037.393.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1037.393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1037contigF-serratus_M_contig1037:271921..273777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size515
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1037.393.1prot_F-serratus_M_contig1037.393.1Fucus serratus malepolypeptideF-serratus_M_contig1037 271972..273574 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928847.6895344-UTR-F-serratus_M_contig1037:271920..2719711622928847.6895344-UTR-F-serratus_M_contig1037:271920..271971Fucus serratus maleUTRF-serratus_M_contig1037 271921..271971 +
1690962598.9477155-UTR-F-serratus_M_contig1037:271920..2719711690962598.9477155-UTR-F-serratus_M_contig1037:271920..271971Fucus serratus maleUTRF-serratus_M_contig1037 271921..271971 +
1622928847.7349315-UTR-F-serratus_M_contig1037:273574..2737771622928847.7349315-UTR-F-serratus_M_contig1037:273574..273777Fucus serratus maleUTRF-serratus_M_contig1037 273575..273777 +
1690962598.9841492-UTR-F-serratus_M_contig1037:273574..2737771690962598.9841492-UTR-F-serratus_M_contig1037:273574..273777Fucus serratus maleUTRF-serratus_M_contig1037 273575..273777 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928847.704795-CDS-F-serratus_M_contig1037:271971..2720931622928847.704795-CDS-F-serratus_M_contig1037:271971..272093Fucus serratus maleCDSF-serratus_M_contig1037 271972..272093 +
1690962598.958054-CDS-F-serratus_M_contig1037:271971..2720931690962598.958054-CDS-F-serratus_M_contig1037:271971..272093Fucus serratus maleCDSF-serratus_M_contig1037 271972..272093 +
1622928847.7213867-CDS-F-serratus_M_contig1037:273435..2735741622928847.7213867-CDS-F-serratus_M_contig1037:273435..273574Fucus serratus maleCDSF-serratus_M_contig1037 273436..273574 +
1690962598.9672794-CDS-F-serratus_M_contig1037:273435..2735741690962598.9672794-CDS-F-serratus_M_contig1037:273435..273574Fucus serratus maleCDSF-serratus_M_contig1037 273436..273574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1037.393.1

>prot_F-serratus_M_contig1037.393.1 ID=prot_F-serratus_M_contig1037.393.1|Name=mRNA_F-serratus_M_contig1037.393.1|organism=Fucus serratus male|type=polypeptide|length=87bp
MDHIVSHPTSGIFLSQLGKGFNGVLEARLPYLYKCCCTGKRMGTGTSAGT
ETRAVLEMRTKTRMEPGTRTGSGRTEKRRRSARNRT*
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mRNA from alignment at F-serratus_M_contig1037:271921..273777+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1037.393.1 ID=mRNA_F-serratus_M_contig1037.393.1|Name=mRNA_F-serratus_M_contig1037.393.1|organism=Fucus serratus male|type=mRNA|length=1857bp|location=Sequence derived from alignment at F-serratus_M_contig1037:271921..273777+ (Fucus serratus male)
AAAAAGGACGGGGAGCAGGTAATAATTATGTCGTGACGGTGGCGGCGAAT
AATGGATCACATTGTGAGCCATCCCACTTCAGGCATTTTCCTGTCCCAGC
TGGGAAAGGGGTTTAACGGAGTACTCGAGGCAAGACTTCCGTACTTGTAC
AAGTGCTGCTGTACTGGTAAACGGTGAGTCGTGACCCAACTCTAGGGTAA
AGGGGAAAATAAACATCTGAAACGTGGATTAAAAGTCGAGCCCGCTGCTC
CTGGCTGCTAGATAATCGTGTTATGACCGCACACTCAACCGTCACCTACC
TTTCGCAAACCCATCGTACAACAGCAGTCGTGGTGGTTCGTCGTAGCGCA
GGAGTAGAGCGCAAACTCCCCAGACAGGGGATGGCTGGGCTTGAATAAGA
GAAGGTCTAGATGCGTTCAGATTTTTCTTTAAAATATACTCCAGGTAGAA
ATAACGGTTTGTCCCCTTATAAAATAAAATGGGTTTGCACAAAAAATAGC
CAGCCTGTACTTGGTCACTATAGGTCGGAGTTGCACACACACCGATTTAC
GTTATTGCCAAAGTCCGGTTCATACCGTTTACCCGTACGATACTTTTTTT
GAAGAAAATACAGAATACTTGTGACACTGTACAGCATCAGCAGTACGTGC
GGATTGTTTGATTGATTGAATTCGCACATAAGTTGATGTCAAATATCCAG
CCCATGGTCACAAGGTAGAAAAACAGAAAAATGTTCAGATTTTTCTCTAG
CCGGAAGGGAAAATGTACGACGTACTCTCGATTATACTCGAAAAAAGGAA
AAAGCGACATCTGACATATATCTCCGAAGAAACGAAAAAAAGAAAATGAA
GCAAAACGAAAAAGGACGCAGGCATTTGTCTTGTTCGGTCAACTGCGTGC
GGCTGTCGGGGCGCATGAATATATCGAAGAACGAAGAAAGATTGAACGAG
GGGCCGCGCTGGCCAGAATCTGTACGAACTTGAAGTTTTGAAAAGTATTG
ATGTCGGATTTCCCACCCGCTGCTTGCAGCACCTGTCTTACCTTCTATAC
TATTTGTTAAAACTGCGCTTCACTCTACTCTAATACATTTTCTTTAAACA
ACCAAATTCGGATCAGAAATTTAACTTTTTGCCTTGTCTTCCCAGTCTGT
AAATTGTTTGCCTAATGTTTTTCATATATCATACCACGTACCAGTATGTA
TTATAATAATAGTGGGTTTCTCCCCGATATTATTTATTGTCTTGACCCTA
TTTAGAAAATAGCATGAACCCGTTTAAATGTCATGATGCGTTCAACTGGA
GAACGATTAATCCTTGGGTACTTAAAATTCGACTTCACGGTCGACGAGGG
AAAGGGACGGCTGAATCCTTCCTCTCCTCTCGCGATAAAAATTAAGCCAA
GCACCGCAGAAGGAAGGTGGAGAAATCCTGTGTAACCCTGGCTGGTGCAT
CGACAAGCCTGACGTCCAGAATACATGGGATGCCAACACACACACACACA
CACACACGAACACAGGATGGGAACGGGGACGAGTGCGGGGACGGAAACGA
GAGCAGTTTTGGAGATGAGAACGAAGACGAGGATGGAACCGGGGACGAGG
ACAGGATCAGGGAGGACGGAAAAGAGGCGACGAAGCGCAAGAAATCGCAC
ATGAACTGTAGACGCGATCAGGCACTTGTATTCCGCACGCGTCAACATTT
AGGCAGACAGAGGGTAGCGCTTGCGGGCACCCGACAAGTCCGTTTGCAAG
GCCTGGTGCCTGTACACGCGTATCGCACCGAAAGGTAACCGGGTCCGAGG
GACGGAAAGGATCGAACGAGGTCGGGAGCGGGATCGGAGTCGGAGGCGGG
AACGGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1037:271921..273777+

>mRNA_F-serratus_M_contig1037.393.1 ID=mRNA_F-serratus_M_contig1037.393.1|Name=mRNA_F-serratus_M_contig1037.393.1|organism=Fucus serratus male|type=CDS|length=522bp|location=Sequence derived from alignment at F-serratus_M_contig1037:271921..273777+ (Fucus serratus male)
ATGGATCACATTGTGAGCCATCCCACTTCAGGCATTTTCCTGTCCCAGCT
GGGAAAGGGGTTTAACGGAGTACTCGAGGCAAGACTTCCGTACTTGTACA
AGTGCTGCTGTACTGGTAAACGATGGATCACATTGTGAGCCATCCCACTT
CAGGCATTTTCCTGTCCCAGCTGGGAAAGGGGTTTAACGGAGTACTCGAG
GCAAGACTTCCGTACTTGTACAAGTGCTGCTGTACTGGTAAACGGATGGG
AACGGGGACGAGTGCGGGGACGGAAACGAGAGCAGTTTTGGAGATGAGAA
CGAAGACGAGGATGGAACCGGGGACGAGGACAGGATCAGGGAGGACGGAA
AAGAGGCGACGAAGCGCAAGAAATCGCACATGAGATGGGAACGGGGACGA
GTGCGGGGACGGAAACGAGAGCAGTTTTGGAGATGAGAACGAAGACGAGG
ATGGAACCGGGGACGAGGACAGGATCAGGGAGGACGGAAAAGAGGCGACG
AAGCGCAAGAAATCGCACATGA
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