mRNA_F-serratus_M_contig1511.3540.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1511.3540.1
Unique NamemRNA_F-serratus_M_contig1511.3540.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1511.3540.1 vs. uniprot
Match: D7FSJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ4_ECTSI)

HSP 1 Score: 152 bits (385), Expect = 4.120e-38
Identity = 94/168 (55.95%), Postives = 114/168 (67.86%), Query Frame = 2 
Query:    2 ALRGLLSRLEA-SGAPLSLPFLPASFSSMGDCEKEKGQGGAGRTPPPVENALETARLLTLVKSWSPSLSPADTESEE--WELQQSLLATEYGGLDRSVKSLMEELISIEAQVVKAVETSKVKDDRRGSQVIPGYVDAHTPAKLEKPVELAYAQQAEIERSAQVVINHL 496
            ALRGLLSRLE  SG    L   PA   + G+ +   G GG  R PPPV NALETARLLTL +        +    ++  WELQ+SLL +E+G  +R    LM++LI+IEA+V KAVE SK KDD+RGSQVIPGY DAHTPAKLE PV+LAY+QQAE+E  A  VI+ L
Sbjct:  484 ALRGLLSRLEEQSGTDRFLLQGPAK-PTWGNGDGNDG-GGVCRMPPPVGNALETARLLTLEQQQQQQXXWSSVGGDDGGWELQKSLLVSEFGEEERGFIDLMQKLIAIEAEVAKAVEISKAKDDKRGSQVIPGYADAHTPAKLEVPVKLAYSQQAEVEGKAHGVISRL 649
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BLAST of mRNA_F-serratus_M_contig1511.3540.1 vs. uniprot
Match: A0A6H5JVV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVV1_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.210e-8
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 2 
Query:  377 QVIPGYVDAHTPAKLEKPVELAYAQQAEIERSAQVVINHL 496
            QVIPGY DAHTPAKLE PV+LAY+QQAE+E  A  VI+ L
Sbjct:   24 QVIPGYADAHTPAKLEVPVKLAYSQQAEVEGKAHGVISRL 63
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BLAST of mRNA_F-serratus_M_contig1511.3540.1 vs. uniprot
Match: A0A835Z3E2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3E2_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.250e-7
Identity = 44/126 (34.92%), Postives = 65/126 (51.59%), Query Frame = 2 
Query:  131 PPPVENALETARLL-----TLVKSWSPSLSPADTESEEWELQQSLLATEYGGLDRS---VKSLMEELISIEAQVVKAVETSKVKDDRRGSQVIPGYVDAHTPAKLEKPVELAYAQQAEIERSAQVV 484
            PPP    L  +R L     T     S     A  E +EW+ Q+++L  E+G    +   +K ++ EL +  A V   V  SK +DD+RG+QVIPGY++AH  A  +  V  A A  A++ R  +VV
Sbjct:  498 PPPTTMLLHVSRELPQPPPTGEAQLSTIFEQALGEEDEWDFQRAVLGYEFGAAMETWEGIKGVLLELKAAAAAVXXXVAASKGRDDKRGAQVIPGYMNAHMSAADDPVVLNAKAGSADVARRVEVV 623
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BLAST of mRNA_F-serratus_M_contig1511.3540.1 vs. uniprot
Match: A0A4P5YQ29_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A4P5YQ29_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 9.550e-5
Identity = 24/50 (48.00%), Postives = 37/50 (74.00%), Query Frame = 2 
Query:  296 MEELISIEAQVVKAVETSKVKDDRRGSQVIPGYVDAHTPAKLEKPVELAY 445
            M+ L+ IE +  + VE+SK +DD RG+++IPGY DAH PA+L+  V+ A+
Sbjct:  576 MQRLLEIERENAQLVESSKTRDDERGARIIPGYADAHLPARLDPVVQNAW 625
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1511.3540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FSJ4_ECTSI4.120e-3855.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVV1_9PHAE1.210e-872.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z3E2_9STRA1.250e-734.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4P5YQ29_9BACT9.550e-548.00Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1511contigF-serratus_M_contig1511:68704..73650 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size956
Cds size489
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1511.3540.1prot_F-serratus_M_contig1511.3540.1Fucus serratus malepolypeptideF-serratus_M_contig1511 68704..73185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929498.865465-CDS-F-serratus_M_contig1511:68703..690161622929498.865465-CDS-F-serratus_M_contig1511:68703..69016Fucus serratus maleCDSF-serratus_M_contig1511 68704..69016 +
1690962880.0273218-CDS-F-serratus_M_contig1511:68703..690161690962880.0273218-CDS-F-serratus_M_contig1511:68703..69016Fucus serratus maleCDSF-serratus_M_contig1511 68704..69016 +
1622929498.8772724-CDS-F-serratus_M_contig1511:71551..716171622929498.8772724-CDS-F-serratus_M_contig1511:71551..71617Fucus serratus maleCDSF-serratus_M_contig1511 71552..71617 +
1690962880.039954-CDS-F-serratus_M_contig1511:71551..716171690962880.039954-CDS-F-serratus_M_contig1511:71551..71617Fucus serratus maleCDSF-serratus_M_contig1511 71552..71617 +
1622929498.8929353-CDS-F-serratus_M_contig1511:73075..731851622929498.8929353-CDS-F-serratus_M_contig1511:73075..73185Fucus serratus maleCDSF-serratus_M_contig1511 73076..73185 +
1690962880.0501392-CDS-F-serratus_M_contig1511:73075..731851690962880.0501392-CDS-F-serratus_M_contig1511:73075..73185Fucus serratus maleCDSF-serratus_M_contig1511 73076..73185 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929498.9096117-UTR-F-serratus_M_contig1511:73185..736501622929498.9096117-UTR-F-serratus_M_contig1511:73185..73650Fucus serratus maleUTRF-serratus_M_contig1511 73186..73650 +
1690962880.064872-UTR-F-serratus_M_contig1511:73185..736501690962880.064872-UTR-F-serratus_M_contig1511:73185..73650Fucus serratus maleUTRF-serratus_M_contig1511 73186..73650 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1511.3540.1

>prot_F-serratus_M_contig1511.3540.1 ID=prot_F-serratus_M_contig1511.3540.1|Name=mRNA_F-serratus_M_contig1511.3540.1|organism=Fucus serratus male|type=polypeptide|length=163bp
CPAWAALPLGSLRGPVEPPLSSRIVLLYGRLREGKRSRRGGANASPGGER
PRDGAPVDTGEIVVAESQSSRYRKRRMGAATELARDGVRGLGQEREEPHG
GAHLDRGSGGQGCRNQQGQGRQARVAGHPRLRGRAHAGQARETGGAGLRP
TGRDREECSSSH*
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mRNA from alignment at F-serratus_M_contig1511:68704..73650+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1511.3540.1 ID=mRNA_F-serratus_M_contig1511.3540.1|Name=mRNA_F-serratus_M_contig1511.3540.1|organism=Fucus serratus male|type=mRNA|length=4947bp|location=Sequence derived from alignment at F-serratus_M_contig1511:68704..73650+ (Fucus serratus male)
TGCCCTGCGTGGGCTGCTCTCCCGCTTGGAAGCCTCCGGGGCCCCGTTGA
GCCTCCCCTTTCTTCCCGCATCGTTCTCCTCTATGGGCGATTGCGAGAAG
GAAAAAGGTCAAGGAGGGGCGGGGCGAACGCCTCCCCCGGTGGAGAACGC
CCTCGAGACGGCGCGCCTGTTGACACTGGTGAAATCGTGGTCGCCGAGTC
TCAGTCCAGCCGATACCGAAAGCGAAGAATGGGAGCTGCAACAGAGCTTG
CTCGCGACGGAGTACGGGGGCTTGGACAGGAGCGTGAAGAGCCTCATGGA
GGAGCTCATCTCGGTGAGACATGGAGGAGCTCATCTCGGGGAGGATGATT
TGGAATCCTGCCCACCAACAATTAGCGAGTCGTTTACTAGTACCGTACCT
ACCAGTACGTATGCTGGGATGGCTTCGATCATCTGCTCGTTGGTGATTGG
AGGGCTGCTGGAAGGCTGCAAGGGAGCACTATGATTTCCGCCCCTCCATC
TTTTTCCCTCCACAAGCAACGCTATCAGACTAGCAAGGCTAAAATGACTT
CAATTAGCAAAGAGCACGGCCGGCGTTGGGACGATCCTGTCCGAAGAGTT
CCCCAAAATATTGTTTTTCCGACACAGTAGCATACATAAATACATCTATA
CCCTTGTTTCATTGCAGGTAAAACAGCTGGCAGGGCCTTCGCTTGTGAGT
GAGGAAGTGCTATTCTTGATATAGTACTGTTACCACTGTACCTTTACGCT
GTATCTTTTTCTGCCTCGTGAAGGTACTTGATTCTGTTAACACCTGTCCT
TCTTTACCGCCAGTTTATTTTTTTATCGTGAACATCTAGATTATTTTTGC
CCGGTGGAGAGCTGCTATAACCTGGTCCTGATGTCAATATGTACCTTTTT
ACCACACCGTTTTGCGTCATGAAAGGCTTACTGTACCTCAACTTTTTATT
CCGTATATTTTTGCCTCAAGGAAAACCAACTGTAGCTGGCACTGAATCAT
TGTACCTTCTCACCGTACCTTTTTTACAGCACCTCGTGAAGATTGGACGT
TTTGTACCTGGCGCTTCTTTCACGTTACTTACCTTTTTGCGTCGTGGAAG
ATCTACTGTTCCTCAACTTTTTATTCCGTATCTTTTTGCCTCAAGGAAAA
CCAACTGTAGCTGGCACTGAATCATTATACCTTCTCACCGTACCTTTTTT
ACAGCACCTCGTGAAGATTGGACGTTTTGTACCTGGCGCTTCTTTCACGT
TACTTACCTTTTTGCGTCGTGGAAGACCTACTGTTCCTCAACTTTTTATT
CCGTATCTTTTTGCCTCAAGGAAAACCAACTGTAGCTGGCACTGAATCAT
TATACCTTCTCACCGTACCTTTTTTACAGCACCTCGTAAAGATTGGACGT
TTTGTACCTGGCGCTTCTTTCACGTTAGTTACTTTTTGCGTCGTGGAAGA
CCTACTGTACCTCAACTTTTTATTCCGTATATTTTTGCCTCAATGAAAAC
CAACTGTAGCTGGCACTGAATCATTGTACCTTCTCACCGTACCTTTTTTA
CAGCACCTCGTGAAGATTGGACGTTTTGTACCTGGCGCTTCTTTCACGTT
AGTTACTTTTTGCGTCGTGGAAGACCTACTGTACCTCAACTTTTTATTCC
GTATATTTTTGCCTCAAGGAAAACCAACTGTAGCTGGCACTGAATCATTG
TACCTTCTCACCGTACCTTTTTTACAGCACCTCGTGAAGATTGGACGTTT
TGTACCTGGCGCTTCTTTCACGTTACTTACCTTTTTGCGTCGTGGAAGAT
CTACTGTTCCTCAACTTTTTATTCCGTATCTTTTTGCCTCAAGGAAAACC
AACTGTAGCTGGCACTGAATCATTGTACCTTCTCACCGTACCTTTTTTAC
AGCACCTCGTGAAGATTGGACGTTTTGTAAATGGCGCTTCTTTCACGTTA
GTTACTTTTTGCGTCGTGGAAGACCTACTGTACCTCAACTTTTTATTCCG
TATATTTTTGCCTCAAGGAAAACCAACTGTAGCTGGCACTGAATCATTGT
ACCTTCTCACCGTACCTTTTTTACAGCACCTCGTGAAGATTGGACGTTTT
GTACCTGGCGCTTCTTTCACGTTAGTTACTTTTTGCGTCGTGGAAGACCT
ACTGTACCTCAACTTTTTATTCCGTATATTTTTGCCTCAAGGAAAACCAA
CTGTAGCTGGCACTGAATCATTGTACCTTCTCACCGTACCTTTTTTACAG
CACCTCGTGAAGATTGGACGTTTTGTACCTGGCGCTTCTTTCACGTTAGT
TACTTTTTGCGTCGTGGAAGATCTACTGTACCTCAACTTTTTATTCCGTA
TCTTTTTGCCTCAAGGAAAACCAACTGTAGCTGGCACTGAATCATTGTAC
CTTCTCACCGTACCTTTTTTACAGCACCTCGTGAAGATTGGACGTTTTGT
ACCTGGCGCTTCTTTCACGTTAGTTACTTTTTGCGTCGTGGAAGACCTAC
TGTTCCTCAACTTTTTCCCCGTACCTTTTTGCGTCAAGCAAAACCAACTG
TAGCTGGCACTGAAACATTGTACCTTCTCACCGTACCTTTTTTACAGCAC
CTCGTGAAGATTGGACGTTTTGTACCTGGCGCTTCTTTCACGTTAGTTAC
TTTTTGCGTCGTGGAAGACCTACTGTACCTCAACTTTTTATTCCGTATCT
TTTTGCCTCAAGGAAAACCAACCGTAGCCGGCACTTAATCGTTGTACCTT
CTCACGGTACCTTTTTTACAGCACCTCGTGAAGATTAAGATTGGATGTTT
TGTACCTGGCGCTTCTTTCACGACACACCTTTGATACCTTATCTGCAGAT
AGAGGCTCAGGTGGTCAAGGCTGTCGAAACCAGCAAGGTCAAGGACGACA
GGCGCGGGTCGCAGGTATGATATTGCGATCCTACTTATATGTCATGAAGG
TACAATATTTGGTGCTGCCGCGGTGTTTTGCTCGTCTCCCGATGGTTTGC
CGACTCCGCCATGGACATTTTTTTTCTCGCGGCATGGATTCGAGGATTTA
TCTTGTTATTAACCCCATCCCCCCCCCACCCCCCCCTTGTACATGTCATA
TCTTGGATACAATCTTCCTTATCTATACCAGTACTCTGTAATCTACGAGG
TGGATGTGTGCGTGCTGCCGCGAGACTACCCCCGCTTTCGGATGTAAACA
TGTACGGTACCTGGTAGCTCAAAGGAGAGCCATTATAGTTATTATAGCGG
TATGATAGTTCGCATTTTCAGAAACCTGTCTTTTAAGTGCTTGGTGCGCC
ACCCCTAGAGGGCAGCTAAGGGATTTGAGGCATGTAAACGGCGGAAGTTC
CGTTTAACATCTATTTCACATATTTGAAGTCACTCTAGGCCCTAGCCCTC
CCTGACATATGTATATATATATACTTTTGTATATATATTATATATATACT
TTTGTATATATATATTATATATATACTCTAGTACATATATTATATATATA
CTTTTGTATATATATATATATATACAAAAGTATATACATTTTTTTTCTTT
CATTTCACTTATTAATAGTATAGCCGTTGAGCCTCATCGTTGTCATCCTG
TTAATACCTGCGGTCACTGAGGATCTTCCCATCTCTCCCCGGTTCACACG
CCTTACGATTGTTTTTGTCGCGATGCAAGTTCAGCACTCTTACAAGTCGT
CAACCAATGGTTGAATAGTAGCTTACTCGCGTACTCACGGTTTCCCCTAC
GGACGCCAGAATCACAAGCCCAAGCCAGGAAGTCACAAGGAATACAGACA
TCGAAACGCGGCATTCAAGGCTTTCCTGTTTCCTTCTCAAACCTACGTTC
TTAAAATGTGTCACTTGGTGGCATTGCTTCTTTTATTGAATCCATTATAT
TATCTGATGTGTAGACATACCATTTCTATACGCGTTGTAGTTTGTGTGTG
TGCGTCTATTTCCGCTAAATCAATCGTTGTCCTGACGGAAGACGAGGTTC
GAGTAGCACGAAGCAAGTGGTCAAACCATTGTTCCGCCTTTTTGACTCGC
CTGCCTGCCTTCCATTCACAAGTTTTACAAAATGGCGCGACACCGGATCA
AACTTCCCCCGTCGATAGCTTCTTCTCGCCGAGGTCTGAATTATTTTAGT
CCTCTCGTGGGCTTGCCTATCGAAGCGCGCTGCTTTTCCGCATCACCCCG
GGGCGCGCAATGCCTCCGTTTCGAGTTTTTTTTTTTATCCCGCCTGTCCC
TACCGAGGGTTTTTAAAGACACTTGCTTGTTGTTCGTTTTATTCAGCACC
TCCCGTAAGCACCTCTATAGTGCGAGCAGTGACTCTCCTACGCGGTGGCG
CCTTCTTCTTTTGGCGTGCCAGGTCATCCCCGGCTACGTGGACGCGCACA
CGCCGGCCAAGCTAGAGAAACCGGTGGAGCTGGCCTACGCCCAACAGGCC
GAGATAGAGAGGAGTGCTCAAGTAGTCATTAACCACTTGTGACCTCGTGC
GCGGGTCTCTGCCTCCACCGTGGACCCTACCGTACACCCCTATGCTTGTG
CGTACTTTAACTGACAGAAGGAGGCAAAATAGGAAGCTGAAGCGCCATCG
GAGAAGTGCGCACCCACGGCGCTACTGTCTATGTCTCACCAGCAGTAAAA
TCGGGCACAAGACGACGCTGACCTAGGGCTCTCTGCCGTTCGCGCCGTGG
CGGTGGTCTTTTCTCACCATGACCCACAGTATTCGGATGAGGCAAAAATA
TGGAGAGGAGGGTGCTTTTGGTCGGGTCGACCGCGTTATGTATTAGAGCT
ATAATACATGTTCGGCGAGAACGCCTCCCCAGGGGAACACCCTCGCCATT
TTTCTCTTGATCTCAGAATTAACAGGCGCTCAAAATATATGTTGGGCGAG
CCCTTCGCAGGGTCTTTCCATCGCGGCCATGTTTGATGGAGTCTGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1511:68704..73650+

>mRNA_F-serratus_M_contig1511.3540.1 ID=mRNA_F-serratus_M_contig1511.3540.1|Name=mRNA_F-serratus_M_contig1511.3540.1|organism=Fucus serratus male|type=CDS|length=978bp|location=Sequence derived from alignment at F-serratus_M_contig1511:68704..73650+ (Fucus serratus male)
TGCCCTGCGTGGGCTGCTCTCCCGCTTGGAAGCCTCCGGGGCCCCGTTGA
GCCTCCCCTTTCTTCCCGCATCGTTCTCCTCTATGGGCGATTGCGAGAAG
GAAAAAGGTCAAGGAGGGGCGGGGCGAACGCCTCCCCCGGTGGAGAACGC
CCTCGAGACGGCGCGCCTGTTGACACTGGTGAAATCGTGGTCGCCGAGTC
TCAGTCCAGCCGATACCGAAAGCGAAGAATGGGAGCTGCAACAGAGCTTG
CTCGCGACGGAGTACGGGGGCTTGGACAGGAGCGTGAAGAGCCTCATGGA
GGAGCTCATCTCGTGCCCTGCGTGGGCTGCTCTCCCGCTTGGAAGCCTCC
GGGGCCCCGTTGAGCCTCCCCTTTCTTCCCGCATCGTTCTCCTCTATGGG
CGATTGCGAGAAGGAAAAAGGTCAAGGAGGGGCGGGGCGAACGCCTCCCC
CGGTGGAGAACGCCCTCGAGACGGCGCGCCTGTTGACACTGGTGAAATCG
TGGTCGCCGAGTCTCAGTCCAGCCGATACCGAAAGCGAAGAATGGGAGCT
GCAACAGAGCTTGCTCGCGACGGAGTACGGGGGCTTGGACAGGAGCGTGA
AGAGCCTCATGGAGGAGCTCATCTCGATAGAGGCTCAGGTGGTCAAGGCT
GTCGAAACCAGCAAGGTCAAGGACGACAGGCGCGGGTCGCAGATAGAGGC
TCAGGTGGTCAAGGCTGTCGAAACCAGCAAGGTCAAGGACGACAGGCGCG
GGTCGCAGGTCATCCCCGGCTACGTGGACGCGCACACGCCGGCCAAGCTA
GAGAAACCGGTGGAGCTGGCCTACGCCCAACAGGCCGAGATAGAGAGGAG
TGCTCAAGTAGTCATTAAGTCATCCCCGGCTACGTGGACGCGCACACGCC
GGCCAAGCTAGAGAAACCGGTGGAGCTGGCCTACGCCCAACAGGCCGAGA
TAGAGAGGAGTGCTCAAGTAGTCATTAA
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