mRNA_F-serratus_M_contig1510.3535.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1510.3535.1
Unique NamemRNA_F-serratus_M_contig1510.3535.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1510.3535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1510contigF-serratus_M_contig1510:146803..148113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size286
Cds size282
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1510.3535.1prot_F-serratus_M_contig1510.3535.1Fucus serratus malepolypeptideF-serratus_M_contig1510 146803..148111 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929495.3512187-CDS-F-serratus_M_contig1510:146802..1468911622929495.3512187-CDS-F-serratus_M_contig1510:146802..146891Fucus serratus maleCDSF-serratus_M_contig1510 146803..146891 +
1690962879.4280417-CDS-F-serratus_M_contig1510:146802..1468911690962879.4280417-CDS-F-serratus_M_contig1510:146802..146891Fucus serratus maleCDSF-serratus_M_contig1510 146803..146891 +
1622929495.3652565-CDS-F-serratus_M_contig1510:147437..1475521622929495.3652565-CDS-F-serratus_M_contig1510:147437..147552Fucus serratus maleCDSF-serratus_M_contig1510 147438..147552 +
1690962879.4375832-CDS-F-serratus_M_contig1510:147437..1475521690962879.4375832-CDS-F-serratus_M_contig1510:147437..147552Fucus serratus maleCDSF-serratus_M_contig1510 147438..147552 +
1622929495.3824468-CDS-F-serratus_M_contig1510:148033..1481111622929495.3824468-CDS-F-serratus_M_contig1510:148033..148111Fucus serratus maleCDSF-serratus_M_contig1510 148034..148111 +
1690962879.4492857-CDS-F-serratus_M_contig1510:148033..1481111690962879.4492857-CDS-F-serratus_M_contig1510:148033..148111Fucus serratus maleCDSF-serratus_M_contig1510 148034..148111 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1510.3535.1

>prot_F-serratus_M_contig1510.3535.1 ID=prot_F-serratus_M_contig1510.3535.1|Name=mRNA_F-serratus_M_contig1510.3535.1|organism=Fucus serratus male|type=polypeptide|length=94bp
QRLGVSPGDDEEGSSFAGEARKALNSEGLSPLHPVLKDSSNNSLWDHRRV
STEIEASTCAAAGFRPVKEATSVPFRAQPPSMRGHARSSRLDTA
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mRNA from alignment at F-serratus_M_contig1510:146803..148113+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1510.3535.1 ID=mRNA_F-serratus_M_contig1510.3535.1|Name=mRNA_F-serratus_M_contig1510.3535.1|organism=Fucus serratus male|type=mRNA|length=1311bp|location=Sequence derived from alignment at F-serratus_M_contig1510:146803..148113+ (Fucus serratus male)
CAGCGGCTTGGCGTTTCACCCGGCGATGATGAAGAAGGTTCTTCTTTTGC
AGGAGAAGCCAGGAAAGCGCTGAACAGCGAGGGTTTGAGGTCCGTGTGAT
TGCTGGAACTTGCAGCATGCATCGATCAATGGCTTGAAAGGCATCATGCT
TACTGTCCTGTTTTTAGAATATCATTGCTCTTCAGCAGGTTCATTTTCGG
CCGAGATAAAACTGAAAACAGTACGTACTGTCTTGACGAGCTTAAGTCGA
TCTACGTCGCAGTTGATCCAAGTAAAGTGCAGGTCTATCAATACGTAGTC
TAGATCGACCGTTGTTTATTGGTTTTAATTCGGAAGGCATTATCATTACA
TCGTAAACAAGGGAACAGGGGATGGTGGAGGGTATGGTTGTGAGTTCATC
ATTGTTCTCGGTGTACGCGGTCAAGAAGAGAGTGCATTGAGTTAGCAGCC
CACGCAAGGTAGCGCGGGATGGGATCTCTGTAGATAAAGGGTTGATAGGG
GATCAATTGTGTGGTAAGCCAGCCAGTCAGGCCAGCGAGTTGGTGATTTT
TTTTTAATCCAAGTAAACTAAACGTTGCCGCGGTGCTGAGCACTACATAC
CCCCCCCTCCGTGTCTCTGTGCGCCTCCTCTCCAGCCCTCTGCATCCCGT
ACTCAAGGACAGCTCTAATAACAGTCTGTGGGATCACCGGCGGGTCTCTA
CAGAGATCGAGGCCTCCACTTGTGCCGCCGCGGGCTTCCGACCCGTAAAG
GTGAGAGAGCCACCCATTGAGCAATCGCTGAAAACACTGCATGCGTTACA
CTCTCAACAATGCTGTTGGACAGTTGGTGTTACTGCGCTTGTGACAGAGA
GAAGCAGCAGGACCCACCATCACGAACATTAACAGCAGGAACAAAAACAA
TTCTGACAAAGTTTCCGATCAGGTTAAAAAAATTGTCCACTGGTGTTGGC
GTGGACATGGCCGCGAGACCGCGGTGCGATCGATCGTTTCGGAATTTCCG
CTCTGCGCCTTGCGGGCTGGTGTTGTATCGGGTCGCCGCTTGTTTAATGC
TTATTTTTGATTCCCACGGGGTTTGTGTTGCATTGAAAAACGTTGGTGAT
TGTGGTGCATCGTAACCGACGATATCAGTAGCTATGTTGCAACCCATGAG
CCAGAAGAGGTTTTACGACGCACTCGTTTGCTGCTGCCTTTTTCCTTATC
CCTGCTTTCTCCTTCGGCGCCACCTGTTCAGGAAGCGACGTCGGTACCTT
TCCGCGCGCAGCCGCCCTCCATGAGGGGGCACGCCCGATCCTCCCGACTA
GACACGGCCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1510:146803..148113+

>mRNA_F-serratus_M_contig1510.3535.1 ID=mRNA_F-serratus_M_contig1510.3535.1|Name=mRNA_F-serratus_M_contig1510.3535.1|organism=Fucus serratus male|type=CDS|length=564bp|location=Sequence derived from alignment at F-serratus_M_contig1510:146803..148113+ (Fucus serratus male)
CAGCGGCTTGGCGTTTCACCCGGCGATGATGAAGAAGGTTCTTCTTTTGC
AGGAGAAGCCAGGAAAGCGCTGAACAGCGAGGGTTTGAGCAGCGGCTTGG
CGTTTCACCCGGCGATGATGAAGAAGGTTCTTCTTTTGCAGGAGAAGCCA
GGAAAGCGCTGAACAGCGAGGGTTTGAGCCCTCTGCATCCCGTACTCAAG
GACAGCTCTAATAACAGTCTGTGGGATCACCGGCGGGTCTCTACAGAGAT
CGAGGCCTCCACTTGTGCCGCCGCGGGCTTCCGACCCGTAAAGCCCTCTG
CATCCCGTACTCAAGGACAGCTCTAATAACAGTCTGTGGGATCACCGGCG
GGTCTCTACAGAGATCGAGGCCTCCACTTGTGCCGCCGCGGGCTTCCGAC
CCGTAAAGGAAGCGACGTCGGTACCTTTCCGCGCGCAGCCGCCCTCCATG
AGGGGGCACGCCCGATCCTCCCGACTAGACACGGCCGAAGCGACGTCGGT
ACCTTTCCGCGCGCAGCCGCCCTCCATGAGGGGGCACGCCCGATCCTCCC
GACTAGACACGGCC
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