mRNA_F-serratus_M_contig1498.3415.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1498.3415.1
Unique NamemRNA_F-serratus_M_contig1498.3415.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1498.3415.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 9.990e-27
Identity = 50/102 (49.02%), Postives = 65/102 (63.73%), Query Frame = 1
Query:    1 DCVGPLLKLGDGECDRDNNTPECGYDGGDCCVCTCVDSIACTSDFNCADPDAGDELYACK-TWIIHFPCSDDVEQNWLIEDTAQARILAEATKCSGGYFQVE 303
            DC G  L +GDG C   NN   CGYDGGDCCVC+C      T+ F C DP A +EL+ C+ +  +  PC+ D +Q W++E +AQA+ LA A  CSGG F+VE
Sbjct:  124 DCTGDYLTVGDGSCSEANNNDLCGYDGGDCCVCSCQGVNCMTTSFECLDPSASEELHDCEPSPPLALPCTADAQQTWVVESSAQAQALAAAVNCSGGLFEVE 225          
BLAST of mRNA_F-serratus_M_contig1498.3415.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.200e-25
Identity = 48/102 (47.06%), Postives = 64/102 (62.75%), Query Frame = 1
Query:    1 DCVGPLLKLGDGECDRDNNTPECGYDGGDCCVCTCVDSIACTSDFNCADPDAGDELYACK-TWIIHFPCSDDVEQNWLIEDTAQARILAEATKCSGGYFQVE 303
            DC G  L +GDG C + NN   CGYDGGDCCVC+C       + F C DP A +EL+ C+ +  +  PC+ D +Q W++E + QA+ LA A  CSGG F+VE
Sbjct:   65 DCTGDYLTVGDGSCSKANNNDLCGYDGGDCCVCSCQGVNCMRTSFECLDPSANEELHDCEPSPQLALPCTADAQQTWVVESSTQAQALAAAVNCSGGLFEVE 166          
BLAST of mRNA_F-serratus_M_contig1498.3415.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 3.060e-25
Identity = 47/102 (46.08%), Postives = 64/102 (62.75%), Query Frame = 1
Query:    1 DCVGPLLKLGDGECDRDNNTPECGYDGGDCCVCTCVDSIACTSDFNCADPDAGDELYACKTWIIH-FPCSDDVEQNWLIEDTAQARILAEATKCSGGYFQVE 303
            +C G    +GDG+C  +NN P CGYDGGDCC+C+C  ++ C    +C DP AGDE Y C        PCS +V+Q W++++  +A  LA A  CSGG F+VE
Sbjct:  226 ECTGSWSMIGDGQCQEENNNPACGYDGGDCCICSCSGTL-CGGLADCLDPSAGDEFYECSPPSPEALPCSAEVQQTWVVDEQEEAHALAAAVNCSGGSFEVE 326          
BLAST of mRNA_F-serratus_M_contig1498.3415.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 4.720e-21
Identity = 50/102 (49.02%), Postives = 63/102 (61.76%), Query Frame = 1
Query:    1 DCVGPLLKLGDGECDRDNNTPECGYDGGDCCVCTCVDSIACTSDFNCADPDAGDELYACKTWI-IHFPCSDDVEQNWLIEDTAQARILAEATKCSGGYFQVE 303
            DC    L LGDG CD + NT  CG+DGGDCCVC+C  +    SDF+C DP+A DE + C+       PCS +V+  WL+E   QA+ LA A  CSG  F+VE
Sbjct:  213 DCDAGWLGLGDGFCDSELNTASCGWDGGDCCVCSCNGTACSISDFDCFDPNA-DEFFECQAPPPATLPCSVEVQLTWLVETPLQAQTLAAAVNCSGS-FEVE 312          
BLAST of mRNA_F-serratus_M_contig1498.3415.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 6.390e-21
Identity = 46/107 (42.99%), Postives = 63/107 (58.88%), Query Frame = 1
Query:   16 LLKLGDGECDRDNNTPECGYDGGD----------CCVCTCVDSIACTSDFNCADPDAGDELYACKTWI-IHFPCSDDVEQNWLIEDTAQARILAEATKCSGGYFQVE 303
            +  +G+G C+  NN   C YDGGD          CC CTC  ++  +  F+C DPDA DE Y C+       PCS +V+Q W+++D+AQA+ LA A  CSGG F+VE
Sbjct:   71 VADIGNGLCEEGNNNVFCSYDGGDVSLVACSSLLCCYCTCSGALCQSVTFDCLDPDADDEFYECEAAPPTALPCSAEVQQTWVVDDSAQAQALASAVNCSGGSFEVE 177          
BLAST of mRNA_F-serratus_M_contig1498.3415.1 vs. uniprot
Match: A0A6H5JLP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP6_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 3.620e-19
Identity = 46/102 (45.10%), Postives = 56/102 (54.90%), Query Frame = 1
Query:    1 DCVGPLLKLGDGECDRDNNTPECGYDGGDCCVCTCVDS-IACTSDFNCADPDAGDELYACKTWIIHFPCSDDVEQNWLIEDTAQARILAEATKCSGGYFQVE 303
            DC G    +G+G C  DNNTPECGYDGGDCC C+C      C   F+C DP          T      C+ D+ + WL+E+TA A  LA A  C+GG F VE
Sbjct:   48 DCTGYPPSMGNGLCIPDNNTPECGYDGGDCCECSCQPGQFMCLGRFDCLDPSFNTTECVTNTTA----CAPDLSREWLVENTADAIELANAINCTGGTFDVE 145          
BLAST of mRNA_F-serratus_M_contig1498.3415.1 vs. uniprot
Match: D7FV90_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV90_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.870e-17
Identity = 44/101 (43.56%), Postives = 54/101 (53.47%), Query Frame = 1
Query:    4 CVGPLLKLGDGECDRDNNTPECGYDGGDCCVCTCVDS-IACTSDFNCADPDAGDELYACKTWIIHFPCSDDVEQNWLIEDTAQARILAEATKCSGGYFQVE 303
            C G    +G+G C  +NN PEC YDGGDCC C+C  +   C   F+C DP          T      CS D+ + WL+EDTA A  LA A  C+GG F VE
Sbjct:  155 CTGYPPSMGNGLCIPENNIPECEYDGGDCCECSCQPAQYMCLGRFDCLDPSFNTTECVTNTTA----CSPDLSREWLVEDTADAIELANAINCTGGTFDVE 251          
BLAST of mRNA_F-serratus_M_contig1498.3415.1 vs. uniprot
Match: D7G300_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G300_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 4.510e-11
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 1
Query:    4 CV-GPLLKLGDGECDRDNNTPECGYDGGDCCVCTCVDSI--ACT-SDFNCADPDAGD-----ELYAC-KTWIIHFPCSDDVEQNW 228
            CV G +  +G+G CD +NN+P CG+DGGDCC CTC D++  +C  ++F+C  P  GD     E  AC + W     C DDV  N+
Sbjct:   28 CVNGTIDDIGNGRCDAENNSPSCGFDGGDCCSCTCTDTVLYSCADNEFDCLYPLCGDDSAASEEEACVEDWQSDGFC-DDVNNNY 111          
BLAST of mRNA_F-serratus_M_contig1498.3415.1 vs. uniprot
Match: D7FI82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI82_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 2.190e-9
Identity = 27/54 (50.00%), Postives = 33/54 (61.11%), Query Frame = 1
Query:   16 LLKLGDGECDRDNNTPECGYDGGDCCVCTCVDSIA-------CTSDFNCADPDA 156
            +  +GDG CD +NN   CGYDGGDCC CTCV S++       C   F C DP+A
Sbjct:   13 IASVGDGICDEENNNELCGYDGGDCCECTCVPSVSAGEYSVSCEYGFACIDPNA 66          
BLAST of mRNA_F-serratus_M_contig1498.3415.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.570e-9
Identity = 29/53 (54.72%), Postives = 34/53 (64.15%), Query Frame = 1
Query:    4 CVGPLLKLGDGECDRDNNTPECGYDGGDCCVCTCVDSI-AC-TSDFNCADPDA 156
            C G ++ L DG+CD+ NN  ECGYDGGDCC CTC+D    C    F C DP A
Sbjct:  177 CGGNIVHLADGDCDQINNNEECGYDGGDCCFCTCLDDFYECGIRGFACIDPSA 229          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1498.3415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7Z1_9PHAE9.990e-2749.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2X5_ECTSI1.200e-2547.06Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7FTI5_ECTSI3.060e-2546.08Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7G5Y7_ECTSI4.720e-2149.02Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5K0E9_9PHAE6.390e-2142.99Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JLP6_9PHAE3.620e-1945.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV90_ECTSI3.870e-1743.56Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G300_ECTSI4.510e-1143.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI82_ECTSI2.190e-950.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTT4_9PHAE2.570e-954.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1498contigF-serratus_M_contig1498:99090..99394 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.0
Seed ortholog evalue1.3e-21
Seed eggNOG ortholog2880.D7G2X5
Hectar predicted targeting categoryother localisation
EggNOG OGs2BFIX@1,2S176@2759
Ec32 ortholog descriptionNotch domain
Ec32 orthologEc-09_004230.4
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size305
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929474.3530524-CDS-F-serratus_M_contig1498:99089..993921622929474.3530524-CDS-F-serratus_M_contig1498:99089..99392Fucus serratus maleCDSF-serratus_M_contig1498 99090..99392 +
1690962869.7992573-CDS-F-serratus_M_contig1498:99089..993921690962869.7992573-CDS-F-serratus_M_contig1498:99089..99392Fucus serratus maleCDSF-serratus_M_contig1498 99090..99392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1498.3415.1prot_F-serratus_M_contig1498.3415.1Fucus serratus malepolypeptideF-serratus_M_contig1498 99090..99392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1498.3415.1

>prot_F-serratus_M_contig1498.3415.1 ID=prot_F-serratus_M_contig1498.3415.1|Name=mRNA_F-serratus_M_contig1498.3415.1|organism=Fucus serratus male|type=polypeptide|length=101bp
DCVGPLLKLGDGECDRDNNTPECGYDGGDCCVCTCVDSIACTSDFNCADP
DAGDELYACKTWIIHFPCSDDVEQNWLIEDTAQARILAEATKCSGGYFQV
E
back to top

mRNA from alignment at F-serratus_M_contig1498:99090..99394+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1498.3415.1 ID=mRNA_F-serratus_M_contig1498.3415.1|Name=mRNA_F-serratus_M_contig1498.3415.1|organism=Fucus serratus male|type=mRNA|length=305bp|location=Sequence derived from alignment at F-serratus_M_contig1498:99090..99394+ (Fucus serratus male)
GACTGCGTTGGCCCTTTACTAAAGCTAGGTGATGGTGAGTGCGACAGGGA TAACAATACACCAGAGTGTGGGTATGATGGTGGGGATTGCTGCGTATGTA CGTGTGTTGACAGTATCGCATGCACGTCAGACTTCAACTGTGCTGACCCC GACGCTGGTGACGAGCTGTACGCATGCAAGACGTGGATCATACACTTTCC TTGTTCAGACGATGTTGAACAGAATTGGCTTATTGAGGATACGGCGCAAG CACGAATTCTGGCGGAAGCGACGAAGTGTTCTGGAGGTTACTTTCAAGTT GAATG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1498:99090..99394+

>mRNA_F-serratus_M_contig1498.3415.1 ID=mRNA_F-serratus_M_contig1498.3415.1|Name=mRNA_F-serratus_M_contig1498.3415.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig1498:99090..99394+ (Fucus serratus male)
GACTGCGTTGGCCCTTTACTAAAGCTAGGTGATGGTGAGTGCGACAGGGA
TAACAATACACCAGAGTGTGGGTATGATGGTGGGGATTGCTGCGTATGTA
CGTGTGTTGACAGTATCGCATGCACGTCAGACTTCAACTGTGCTGACCCC
GACGCTGGTGACGAGCTGTACGCATGCAAGACGTGGATCATACACTTTCC
TTGTTCAGACGATGTTGAACAGAATTGGCTTATTGAGGATACGGCGCAAG
CACGAATTCTGGCGGAAGCGACGAAGTGTTCTGGAGGTTACTTTCAAGTT
GAAGACTGCGTTGGCCCTTTACTAAAGCTAGGTGATGGTGAGTGCGACAG
GGATAACAATACACCAGAGTGTGGGTATGATGGTGGGGATTGCTGCGTAT
GTACGTGTGTTGACAGTATCGCATGCACGTCAGACTTCAACTGTGCTGAC
CCCGACGCTGGTGACGAGCTGTACGCATGCAAGACGTGGATCATACACTT
TCCTTGTTCAGACGATGTTGAACAGAATTGGCTTATTGAGGATACGGCGC
AAGCACGAATTCTGGCGGAAGCGACGAAGTGTTCTGGAGGTTACTTTCAA
GTTGAA
back to top