mRNA_F-serratus_M_contig1493.3396.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1493.3396.1
Unique NamemRNA_F-serratus_M_contig1493.3396.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1493.3396.1 vs. uniprot
Match: A0A6H5JTJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ3_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.910e-28
Identity = 52/103 (50.49%), Postives = 76/103 (73.79%), Query Frame = 1
Query:    1 GRWHTVETSDEGLRRERNWFRIGFEPTFVDFTQSGTWFTVMFLLEWAMLACVAILFESGVVQLLVFCGIHFGAFVLLAKFRPFANKIMDFMASMVALINSVSM 309
            G W+TV+T+DE  RR+ +WFRIGFEP + DFTQ+G+WFTV  L+EWA LAC+A+L ++  VQ  +FC +H   F+LL   +PFAN +++ M ++V L ++V M
Sbjct:  424 GHWNTVQTADEDARRDADWFRIGFEPLYADFTQAGSWFTVYTLIEWATLACIAVLVDNSAVQCGLFCALHSMTFILLVVCKPFANSVLNTMGAIVMLTDAVCM 526          
BLAST of mRNA_F-serratus_M_contig1493.3396.1 vs. uniprot
Match: D8LN93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN93_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 4.250e-27
Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = 1
Query:    1 GRWHTVETSDEGLRRERNWFRIGFEPTFVDFTQSGTWFTVMFLLEWAMLACVAILFESGVVQLLVFCGIHFGAFVLLAKFRPFANKIMDFMASMVALINSVSM 309
            G W T ET +EG RRE  WFRIGFEP FVDFT+SG WF    L+EWA L C+  L +  V+QL +FC +H  +F+LL  FRPFAN +++ M + +  I++V M
Sbjct: 1150 GTWETAETDNEGTRREGQWFRIGFEPLFVDFTKSGAWFVAFTLVEWAALGCIGALIDESVLQLSLFCALHTLSFLLLVVFRPFANSVINAMGAGLVGIDAVCM 1252          
BLAST of mRNA_F-serratus_M_contig1493.3396.1 vs. uniprot
Match: D7G5F3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F3_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 2.130e-26
Identity = 48/86 (55.81%), Postives = 64/86 (74.42%), Query Frame = 1
Query:    1 GRWHTVETSDEGLRRERNWFRIGFEPTFVDFTQSGTWFTVMFLLEWAMLACVAILFESGVVQLLVFCGIHFGAFVLLAKFRPFANK 258
            G+W TV+T+DE  RR  +WFRIGFEP F DFTQ+G+WF V  L+EWA+LAC+A+L ++  VQ  +FC IH   F+LL   +PFAN+
Sbjct:  302 GQWETVQTTDEDARRNADWFRIGFEPLFADFTQAGSWFIVYTLIEWAVLACIAVLVDNTAVQCGLFCAIHSMTFILLVACKPFANR 387          
BLAST of mRNA_F-serratus_M_contig1493.3396.1 vs. uniprot
Match: D7FWS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS4_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 7.020e-26
Identity = 50/103 (48.54%), Postives = 74/103 (71.84%), Query Frame = 1
Query:    1 GRWHTVETSDEGLRRERNWFRIGFEPTFVDFTQSGTWFTVMFLLEWAMLACVAILFESGVVQLLVFCGIHFGAFVLLAKFRPFANKIMDFMASMVALINSVSM 309
            G+W TV+T D  + RE +WFRIGFEP FVD+T+ GTWF V+ L+EWA  A V ++ E+ VVQL++FCG+H   F +L   +PFAN +++ + + V  I+++SM
Sbjct: 1502 GQWETVQTPDRQVSREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWAAFAFVGVMIENSVVQLVLFCGLHSVMFFILMFLKPFANSVINNIEACVTAIDAISM 1604          
BLAST of mRNA_F-serratus_M_contig1493.3396.1 vs. uniprot
Match: A0A6H5J9C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C2_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 2.310e-25
Identity = 49/103 (47.57%), Postives = 77/103 (74.76%), Query Frame = 1
Query:    1 GRWHTVETSDEGLRRERNWFRIGFEPTFVDFTQSGTWFTVMFLLEWAMLACVAILFESGVVQLLVFCGIHFGAFVLLAKFRPFANKIMDFMASMVALINSVSM 309
            G+W TV+T+++  RR+ +WFRIGFEP F DFTQ+G+WF +  L+E A+LA +A+L ++  +Q L+FC +H   FVLL  ++PFAN +++ +A+MV L ++V M
Sbjct:  469 GQWETVQTANDKARRKADWFRIGFEPLFADFTQAGSWFIIYTLIECAVLASIAVLVDNSAMQFLLFCAMHSLTFVLLVGWKPFANSVLNAVAAMVMLTDAVCM 571          
BLAST of mRNA_F-serratus_M_contig1493.3396.1 vs. uniprot
Match: D8LLG6_ECTSI (Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG6_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 2.170e-24
Identity = 46/102 (45.10%), Postives = 73/102 (71.57%), Query Frame = 1
Query:    1 GRWHTVETSDEGLRRERNWFRIGFEPTFVDFTQSGTWFTVMFLLEWAMLACVAILFESGVVQLLVFCGIHFGAFVLLAKFRPFANKIMDFMASMVALINSVS 306
            G+W TV+T +  + RE +WFRIGFEP FVD+T+ GTWF V+ L+EWA +A V ++ ++  VQLL+FCG+    F++L   +PFAN +++ + + +  I++VS
Sbjct: 1683 GQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSNVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVAIDAVS 1784          
BLAST of mRNA_F-serratus_M_contig1493.3396.1 vs. uniprot
Match: A0A6H5JD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD90_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 4.040e-24
Identity = 45/101 (44.55%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 GRWHTVETSDEGLRRERNWFRIGFEPTFVDFTQSGTWFTVMFLLEWAMLACVAILFESGVVQLLVFCGIHFGAFVLLAKFRPFANKIMDFMASMVALINSV 303
            G+W TV+T +  + RE +WFRIGFEP FVD+T+ GTWF V+ L+EWA +A V ++ ++  VQLL+FCG+    F++L   +PFAN +++ + + +  I++V
Sbjct: 1724 GQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSYVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVAIDAV 1824          
BLAST of mRNA_F-serratus_M_contig1493.3396.1 vs. uniprot
Match: A0A6H5KCW7_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCW7_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 9.940e-24
Identity = 50/103 (48.54%), Postives = 72/103 (69.90%), Query Frame = 1
Query:    1 GRWHTVETSDEGLRRERNWFRIGFEPTFVDFTQSGTWFTVMFLLEWAMLACVAILFESGVVQLLVFCGIHFGAFVLLAKFRPFANKIMDFMASMVALINSVSM 309
            G W TVE  D   +R RNWFRIGFEP FVD+T++G+WF +  L+E A++ACV +L +S  VQLL+F G++   FVL+A   PFAN++++ MA+    +N+  M
Sbjct:  798 GAWRTVENEDAKEQRLRNWFRIGFEPLFVDYTKAGSWFALYALMEAAVIACVGVLIDSSQVQLLIFLGLNVVQFVLVAHLTPFANRVVESMAACRVGVNAFCM 900          
BLAST of mRNA_F-serratus_M_contig1493.3396.1 vs. uniprot
Match: A0A6H5KV63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV63_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.040e-22
Identity = 49/105 (46.67%), Postives = 62/105 (59.05%), Query Frame = 1
Query:    1 GRWHTVETSDEGLRRERNWFRIGFEPTFVDFTQSGTWFTVMFLLE------------------WAMLACVAILFESGVVQLLVFCGIHFGAFVLLAKFRPFANKI 261
            G W T ET +EG+RRE  WFRIGFEP FVDFT+SG WF    L+E                  WA L C+  L +  V+QL +FC +H  +F+LL  FRPFAN++
Sbjct:  265 GTWETAETDNEGIRREGQWFRIGFEPLFVDFTKSGAWFVAFTLVEGCLGLGHAVSFLLIYFAQWAALGCIGALIDESVLQLSLFCALHTLSFLLLVVFRPFANRL 369          
BLAST of mRNA_F-serratus_M_contig1493.3396.1 vs. uniprot
Match: D7G1B8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B8_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 3.550e-22
Identity = 45/93 (48.39%), Postives = 66/93 (70.97%), Query Frame = 1
Query:    1 GRWHTVETSDEGLRRERNWFRIGFEPTFVDFTQSGTWFTVMFLLEWAMLACVAILFESGVVQLLVFCGIHFGAFVLLAKFRPFANKIMDFMAS 279
            G W TVE  D   +R RNWFRIGFEP FVD+T++G+WF V  L+E A++A V +L ++  VQLL+F G++    VL+ +  PFAN++++ MA+
Sbjct:  132 GAWRTVENEDTKEQRLRNWFRIGFEPLFVDYTKAGSWFAVYALMEAAVIAGVEVLIDNSQVQLLIFLGLNVVQLVLVVRLTPFANRVVESMAA 224          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1493.3396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JTJ3_9PHAE1.910e-2850.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN93_ECTSI4.250e-2751.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5F3_ECTSI2.130e-2655.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWS4_ECTSI7.020e-2648.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9C2_9PHAE2.310e-2547.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLG6_ECTSI2.170e-2445.10Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JD90_9PHAE4.040e-2444.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCW7_9PHAE9.940e-2448.54VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KV63_9PHAE1.040e-2246.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1B8_ECTSI3.550e-2248.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1493contigF-serratus_M_contig1493:128389..129202 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.4
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog2880.D8LIK9
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.structural constituent of cuticle
EggNOG OGsKOG3544@1,KOG3544@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size311
Cds size309
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1493.3396.1prot_F-serratus_M_contig1493.3396.1Fucus serratus malepolypeptideF-serratus_M_contig1493 128391..129202 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929471.7547634-CDS-F-serratus_M_contig1493:128390..1284421622929471.7547634-CDS-F-serratus_M_contig1493:128390..128442Fucus serratus maleCDSF-serratus_M_contig1493 128391..128442 -
1690962868.679639-CDS-F-serratus_M_contig1493:128390..1284421690962868.679639-CDS-F-serratus_M_contig1493:128390..128442Fucus serratus maleCDSF-serratus_M_contig1493 128391..128442 -
1622929471.7746944-CDS-F-serratus_M_contig1493:128727..1288491622929471.7746944-CDS-F-serratus_M_contig1493:128727..128849Fucus serratus maleCDSF-serratus_M_contig1493 128728..128849 -
1690962868.6891127-CDS-F-serratus_M_contig1493:128727..1288491690962868.6891127-CDS-F-serratus_M_contig1493:128727..128849Fucus serratus maleCDSF-serratus_M_contig1493 128728..128849 -
1622929471.7890537-CDS-F-serratus_M_contig1493:129067..1292021622929471.7890537-CDS-F-serratus_M_contig1493:129067..129202Fucus serratus maleCDSF-serratus_M_contig1493 129068..129202 -
1690962868.7000792-CDS-F-serratus_M_contig1493:129067..1292021690962868.7000792-CDS-F-serratus_M_contig1493:129067..129202Fucus serratus maleCDSF-serratus_M_contig1493 129068..129202 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1493.3396.1

>prot_F-serratus_M_contig1493.3396.1 ID=prot_F-serratus_M_contig1493.3396.1|Name=mRNA_F-serratus_M_contig1493.3396.1|organism=Fucus serratus male|type=polypeptide|length=103bp
GRWHTVETSDEGLRRERNWFRIGFEPTFVDFTQSGTWFTVMFLLEWAMLA
CVAILFESGVVQLLVFCGIHFGAFVLLAKFRPFANKIMDFMASMVALINS
VSM
back to top

mRNA from alignment at F-serratus_M_contig1493:128389..129202-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1493.3396.1 ID=mRNA_F-serratus_M_contig1493.3396.1|Name=mRNA_F-serratus_M_contig1493.3396.1|organism=Fucus serratus male|type=mRNA|length=814bp|location=Sequence derived from alignment at F-serratus_M_contig1493:128389..129202- (Fucus serratus male)
GGCAGGTGGCACACGGTGGAAACTTCGGACGAAGGGCTACGGCGGGAGCG GAACTGGTTTAGAATTGGTTTTGAGCCAACGTTCGTGGACTTCACCCAGT CCGGAACGTGGTTCACAGTGATGTTTCTCCTCGAGGTAAAGTCCGTGGTC CCGCCAGGTTCTACCCAAGTTCTGCCGAGACTTTGTTCACTAGCTAGCGT GGTTTATTTCACCCACTTGTCAATCTCTTCTTTCCTATATCTCTAGTATT CGGACTGCAAGACAGCAAGAGGAAAATTCCAAATGCACTGACCCTGCTAA CCTTTTACGCAACGCTCTACGCGTACGGCCGTCCCCCACCGTCATTATTG AAGTGGGCAATGCTCGCTTGCGTCGCAATACTTTTCGAAAGCGGTGTCGT ACAGCTTCTTGTTTTCTGCGGTATCCACTTCGGAGCATTCGTCTTGCTGG CGAAGTTTCGACCGTTCGCAAACAAGTGAGAAACAAGTGACGAGACGGAA ATTGTTCCTTTTCGGCTGTACTTTTGATGCGTTTACGGCAGGCCCCAACA ATTTATACCGGTAGGTTGTATCTGTCGCCGCCATCCATGTATCCCCCAGT AAATGCTTCCAACTATCCGGCGGGGAAGTAGCAAACGCTACGAAACATAA TATAGGATCGTAGATATGCCGACGTACTACGTAAGGTTTATACCACGGAT GTTTCGATCACCCGATAATGCGATCGCCCTTTTCTCTTACACGCTCCCAT CTGTCTGCAGGATCATGGACTTCATGGCTTCTATGGTTGCCTTAATCAAC TCTGTGAGTATGGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1493:128389..129202-

>mRNA_F-serratus_M_contig1493.3396.1 ID=mRNA_F-serratus_M_contig1493.3396.1|Name=mRNA_F-serratus_M_contig1493.3396.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig1493:128389..129202- (Fucus serratus male)
GGCAGGTGGCACACGGTGGAAACTTCGGACGAAGGGCTACGGCGGGAGCG
GAACTGGTTTAGAATTGGTTTTGAGCCAACGTTCGTGGACTTCACCCAGT
CCGGAACGTGGTTCACAGTGATGTTTCTCCTCGAGGGCAGGTGGCACACG
GTGGAAACTTCGGACGAAGGGCTACGGCGGGAGCGGAACTGGTTTAGAAT
TGGTTTTGAGCCAACGTTCGTGGACTTCACCCAGTCCGGAACGTGGTTCA
CAGTGATGTTTCTCCTCGAGTGGGCAATGCTCGCTTGCGTCGCAATACTT
TTCGAAAGCGGTGTCGTACAGCTTCTTGTTTTCTGCGGTATCCACTTCGG
AGCATTCGTCTTGCTGGCGAAGTTTCGACCGTTCGCAAACAATGGGCAAT
GCTCGCTTGCGTCGCAATACTTTTCGAAAGCGGTGTCGTACAGCTTCTTG
TTTTCTGCGGTATCCACTTCGGAGCATTCGTCTTGCTGGCGAAGTTTCGA
CCGTTCGCAAACAAGATCATGGACTTCATGGCTTCTATGGTTGCCTTAAT
CAACTCTGTGAGTATGGATCATGGACTTCATGGCTTCTATGGTTGCCTTA
ATCAACTCTGTGAGTATG
back to top