mRNA_F-serratus_M_contig149.3355.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig149.3355.1
Unique NamemRNA_F-serratus_M_contig149.3355.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig149.3355.1 vs. uniprot
Match: A0A8K1FJP2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJP2_PYTOL)

HSP 1 Score: 79.3 bits (194), Expect = 8.000e-14
Identity = 43/132 (32.58%), Postives = 72/132 (54.55%), Query Frame = 2 
Query:  203 LKTNESVSGVIVDGGYEYYTLCIAQHVHHHRVDIKLEVKSGEADLYLSASDPYPRVNRGSTWIAATAGDEYVSLPTYAEEFLNRKPSAI-----FVGVHG-RPNGRFTLQVAITDID-EREVSAHSALRTPR 577
            +K N +++  +    Y YY LCI +H H H+++I L +  G+A+LYLS+ + YPR+   STWI+   GD+ V L TY + F  +  + I      +GV+G      + L V++ D+   R++ +     T R
Sbjct:   61 VKPNTTMNATVSAEEYHYYHLCIVRHAHEHQININLTMDEGDANLYLSSLEKYPRMGH-STWISQKLGDDRVKLYTYLDGFPRKAETQIRSLSLHIGVYGIDERSSYNLSVSVVDLPITRDIQSREEFYTQR 191
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BLAST of mRNA_F-serratus_M_contig149.3355.1 vs. uniprot
Match: A0A7S2SHC1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SHC1_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.910e-12
Identity = 64/181 (35.36%), Postives = 90/181 (49.72%), Query Frame = 2 
Query:  155 MGNAFDVFGTGSTS---PI-LKTNESVSGVIVDGGYEYYTLCIAQHVHH-HRVDIKLE----------VKSG------EADLYLSASDPYPRVNRGSTWIAATAGDEYVSLPTYAEEFLNRKPSA-------IFVGVHGR-------PNGR-----FTLQVAITDIDEREVSAHSALRTPR 577
             G+   V G GS S   P+ L  N +V GV+    Y YY +C+A H  H  RV+  L           V +G        DLY+S  +P P  +  +TWI+A   DE++SLPTY E+FL R PS        ++VGV+GR       P+       +TL+V++  + EREV   S+LR  R
Sbjct:  117 FGSFDPVAGLGSASSTMPLPLAENLTVHGVVPLHQYHYYQVCVATHPDHFQRVEFHLSGDHNAIPSIGVVAGARAVELNPDLYISGDNPSPTFDH-TTWISAGRTDEFISLPTYVEDFL-RAPSISSGNGKILYVGVYGRDVTVHGVPDPTVSGVPYTLRVSMRSVPEREVQRRSSLRGGR 295
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BLAST of mRNA_F-serratus_M_contig149.3355.1 vs. uniprot
Match: A0A2R5GMM4_9STRA (Uncharacterized protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GMM4_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.330e-5
Identity = 35/122 (28.69%), Postives = 60/122 (49.18%), Query Frame = 2 
Query:  200 ILKTNESVSGVIVDGGYEYYTLCIAQHVHHHRVDIKLEVKSGEADLYLSASDPYPRVNRGSTWIAATAGDEYVSLPTYAE----------EFLNRK---PSAIFVGVHGRPNGRFTLQVAIT 526
            +L  N+S+S  + +  Y+++ +C+ Q     R  + +   SG  DLY+S S P+P V   S  I+A    E++++ T AE          E  + +   PS IF+ V GR    +T+   +T
Sbjct:   34 LLMNNQSISSTVEEDDYDFFQICV-QLEQSFRFTVDVTHNSGNPDLYISFSQPWPYVGN-SDIISANINREHINVSTTAEIVQEAMRVPGEMPSEQHAVPSVIFMSVFGRETSTYTITATLT 153
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig149.3355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A8K1FJP2_PYTOL8.000e-1432.58Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2SHC1_9STRA3.910e-1235.36Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2R5GMM4_9STRA2.330e-528.69Uncharacterized protein n=1 Tax=Hondaea fermentalg... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig149contigF-serratus_M_contig149:409904..413512 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue1.3e-14
Seed eggNOG ortholog112098.XP_008603973.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2EC3K@1,2SI1X@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size964
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig149.3355.1prot_F-serratus_M_contig149.3355.1Fucus serratus malepolypeptideF-serratus_M_contig149 410058..413137 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929463.9198263-UTR-F-serratus_M_contig149:409903..4100571622929463.9198263-UTR-F-serratus_M_contig149:409903..410057Fucus serratus maleUTRF-serratus_M_contig149 409904..410057 +
1690962864.6712694-UTR-F-serratus_M_contig149:409903..4100571690962864.6712694-UTR-F-serratus_M_contig149:409903..410057Fucus serratus maleUTRF-serratus_M_contig149 409904..410057 +
1622929463.98705-UTR-F-serratus_M_contig149:413137..4135121622929463.98705-UTR-F-serratus_M_contig149:413137..413512Fucus serratus maleUTRF-serratus_M_contig149 413138..413512 +
1690962864.7144232-UTR-F-serratus_M_contig149:413137..4135121690962864.7144232-UTR-F-serratus_M_contig149:413137..413512Fucus serratus maleUTRF-serratus_M_contig149 413138..413512 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929463.935356-CDS-F-serratus_M_contig149:410057..4101651622929463.935356-CDS-F-serratus_M_contig149:410057..410165Fucus serratus maleCDSF-serratus_M_contig149 410058..410165 +
1690962864.6796873-CDS-F-serratus_M_contig149:410057..4101651690962864.6796873-CDS-F-serratus_M_contig149:410057..410165Fucus serratus maleCDSF-serratus_M_contig149 410058..410165 +
1622929463.9521117-CDS-F-serratus_M_contig149:412582..4126951622929463.9521117-CDS-F-serratus_M_contig149:412582..412695Fucus serratus maleCDSF-serratus_M_contig149 412583..412695 +
1690962864.686858-CDS-F-serratus_M_contig149:412582..4126951690962864.686858-CDS-F-serratus_M_contig149:412582..412695Fucus serratus maleCDSF-serratus_M_contig149 412583..412695 +
1622929463.9712787-CDS-F-serratus_M_contig149:412923..4131371622929463.9712787-CDS-F-serratus_M_contig149:412923..413137Fucus serratus maleCDSF-serratus_M_contig149 412924..413137 +
1690962864.7015803-CDS-F-serratus_M_contig149:412923..4131371690962864.7015803-CDS-F-serratus_M_contig149:412923..413137Fucus serratus maleCDSF-serratus_M_contig149 412924..413137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig149.3355.1

>prot_F-serratus_M_contig149.3355.1 ID=prot_F-serratus_M_contig149.3355.1|Name=mRNA_F-serratus_M_contig149.3355.1|organism=Fucus serratus male|type=polypeptide|length=145bp
MGNAFDVFGTGSTSPILKTNESVSGVIVDGGYEYYTLCIAQHVHHHRVDI
KLEVKSGEADLYLSASDPYPRVNRGSTWIAATAGDEYVSLPTYAEEFLNR
KPSAIFVGVHGRPNGRFTLQVAITDIDEREVSAHSALRTPRPRR*
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mRNA from alignment at F-serratus_M_contig149:409904..413512+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig149.3355.1 ID=mRNA_F-serratus_M_contig149.3355.1|Name=mRNA_F-serratus_M_contig149.3355.1|organism=Fucus serratus male|type=mRNA|length=3609bp|location=Sequence derived from alignment at F-serratus_M_contig149:409904..413512+ (Fucus serratus male)
GGCTGCTAACAATTCACCGGCAACGCAGCAGCATCGGAGAACTGCCAGGA
TAGACCAAGCCCATGGTGGCAGTCTTTATGTTAGGTCGCCTCGCGCAGAG
GCCGTGACAGGCAGACCGGGTCCCAACGATGAATGTCAGATCTTAGTGGA
TCACATGGGAAACGCATTCGACGTGTTCGGTACCGGTAGTACGAGCCCGA
TCTTGAAAACGAACGAATCCGTATCCGGCGTTATTGTGGACGGGGGCTAT
GAGTACTACACGGTGAGAGGTTTCAAAACAGCCCCCCCCTGTGCTCAGCG
ACCAAACAACACTTCATTGAGCTAGCACCTTCAATCGATATCCAACTCGA
CCTGATCAACGTCGGCTACCATTCCCATACAAACTACGAGACACTTCGTT
CCATTCCCGTTTCAGAGGCCGGAAACCAGCCGGAGTATTGACGTACCTTG
TCCTCCTGCTGACTCATGCCGGTGTACACAGTAGACGCTTTTAAAGAACG
CAGTAGTAAGTCTATCGAGGGTCGACTGCCCCTCACTGAATCGCAGTCCT
ACAAAGCTGCGCATTATTAGCGGATGGATGAGGCGTTGTTATCCTGTTCC
TGATGGTGATTCTGGTATGAATATGAGCAGCACGCTTCCTCTAGCTCCGC
TTTTCCTGTCCATTCAGTAGCTCTATGCTAGGGCTTGAAATTGCCAAGCA
TTTACCAAATCATGGTTGCTACAGTTCTGCAGTTCATTACGTATATGGTA
TGTATGTATGGTCACACATATAGCAAGAGCATGGATCGACCTGGTAAGGT
TGCCAATCCTCCTCGTGGTCAGCTGAATAGGGAAAATAATATTCCCCTGT
TCGTGTTCGTGCCTGATAATTTGGTCTCGCGAGACGGTTTCGGCAGTCCC
ATCCCGCGTCAGCCTGCTCATATCCATTCTCAGGCTGAATCTGGTGCTTA
CTTACGGGATTCCTCCCGAGTTCCGCGGCGGCGTCCCATATATTTATTTA
AAACCGCCACACGCCATCGGGTAAGTCCTGAGTTTATCGGGCCACGCAAT
TGCGTACCGATGTCGTTCATTGCCGAGAGTCCGTCGGCACAAGGCCAGTA
AACCTCAAGGTAGTTCCGAACGAGGGCTGCCTTAGCAGGTCACCATGGAC
CAACTAATATACGCCTCTCTTTCCCACACCCACTACTGGTATGAAGTGGG
CATGTTGAAAGTAACGACCAACAGTTGATACAAAAGAGCAACTAACTGTT
TGCAAGTAATAATGGTGGGAGACTAAGTGGGGGGGGGGGGCATCCCACGA
ATCCTCCGCAACCAACGCCACAGCAGGGGCTCAAAAATAAAAAATGGTTT
CGTACTTACTGGTCGGTCAATTGGTAACCTCGAACCCTTCTGATGTTGGG
ACGTGAGTTTGAATCTCGGTGCAGTCACACGAACTGGGATTTTTCCTCGC
AAAAATAAAAATAAAAATTAGGAAAAAAAATAAACCAAAAAAATCAAACA
AACAATAAACCAAAAAATAAATTTTAAATTAAAATTAATAAATGAAtAAA
AATATATATAAAAATAATGTCTAACATGTTGAGAACGATTATTTCGTGGG
TACAAACAATTCGGCTTCACGGTCGACGAGGGAAAGGGATGGCTGAATCC
TTCTCGCAATAAAAATTAACGCAAGCACGACAGAAGGAAGGTGGAGACAT
TCTGTGTGACCCAGGCTGGTGCGTCCACAAGTTTGACGTCCAGAATAAAT
GGGATCACAACACACACACACACGCACACACACACGCACATATCATTGAT
CCCCCTCGGGAGGATCAATGCGAGTGGCATAGAATGACTAGGATGGCAGG
GCCGGATTGCGCGGTTATGTGCAATTTAATAAATACACACACACACACAA
GCACACACACACACACACACACACACACACTGGTCATACTTAGGAAAAAC
CCTAATAGTAATTAGCGTCGACGGCGGGACGTATATATATACGTGAACAA
AATCGCCAAGGGTCATGATGGATCACCACAACATTGTTCATAGTTACTAC
ACTACAATACTATCGTCCATACGATGAGCGCTGCCATTCCATTCGAGAGT
CATCACCACCTTCATAGCTGCTACAATAATAATATCACCTGTGTCGTACC
ACACGAATGAGGTTGTGACTACCGTACCCACTTATTTTGTTGTTTTATCT
TTACCACACATCACCTCCCTCTTGATAAAAAGAGAAAACCCGTAAAATGA
TTGTCACTGGGAATCGACCCTTCCCCCCCCGCCCCCAATTCCTCTTCGGT
ACTTATTTATTGTAAATACTATTTTTATTATAGTAATAGAGCTTATtgtg
taccaGGGTATCAACGGTGAACGTAGAAGTAAGAGATAAATTAGCCGGAC
CGTGAAAAAACAAATCGCGGGAAGAAAACGAAACGTTTTTTCTCGTCGTT
TTCATGATACACAAACCAACTTTTTCGTGCAGATTCTTCCGCAAAAGAAG
AAGGAACGTGTGAACCTTAAACCATTTTTGCAAGCGGCTTGAAACTGTTA
ATAGTAGATTGGCCATGAAGTGTGTACGGTTACTCTCGAGTTCGTTCGCC
TTCACTCGTTTTATTTGATGGAGTAAGGAAGGGTGCCGACGCCTCCTCTG
ACATTTCACGTACAAAACCTTCCGTACAGCTCTGCATCGCGCAGCACGTA
CACCACCATCGCGTGGATATCAAGCTTGAGGTGAAATCAGGCGAGGCCGA
CCTGTACCTCTCCGCCTCTGACCCTTATCCGCGGGTGAACAGGTGAGAAC
AACCGTTGTCCACCCCCGGCCACCCAGCATATATTCGCACGTGCCTCTGG
TAGCATCAGGGGCAGTAATGTACAAGTAGTTTAGAGAAGAGACCGGCCTC
GCGGCGAAGTGACCACACAGCATTATACATCCCCATATATCTGTGCGGAT
GAGGCTCAGAGAGCCCTCCGTCCACACACCTCGCTTGCACCGTACCCTTC
TCTGAACATTCGCTTCTCAGGGGAAGCACGTGGATCGCGGCAACTGCGGG
CGATGAGTACGTAAGCCTTCCGACCTACGCCGAGGAGTTTTTGAACAGAA
AACCTAGCGCGATTTTCGTTGGCGTCCACGGGCGGCCGAACGGTCGGTTT
ACACTTCAGGTAGCCATCACTGATATTGACGAGAGAGAAGTCTCTGCGCA
CAGTGCTCTCCGCACCCCTCGACCACGGCGCTAACGCTGTCTCGTGAGAA
ACCAAGATGAGTCATGGGGGTGCGCCACTACTGTTTTCCGAGCTTTAGGT
GCAGCCGACGAATGGAAGCCGAGGTGGCGATGGCACAAGACCACGGGACG
GGAGGATTGGATACCTTGTATGTACGTTGCGGTAATAATTTTTCAATATT
TCAGAGCACTTGTCGACATGTTTTTGCGGGATCTGGGCTCGAGCGATATT
GTTAGGGCTAACGCCACACCCTATCGCGATGTGGTGCTCCCGTACCCCCG
GAGAAGAATTCGATGTTTCCAGTCCGTGCCTTGCATTCCGAGAACGCCCA
GTCAGAAATGTCAGCTGTTTTGAGGCGATCGCTCTCATTGAAGGAGACAT
GACGGCAGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig149:409904..413512+

>mRNA_F-serratus_M_contig149.3355.1 ID=mRNA_F-serratus_M_contig149.3355.1|Name=mRNA_F-serratus_M_contig149.3355.1|organism=Fucus serratus male|type=CDS|length=870bp|location=Sequence derived from alignment at F-serratus_M_contig149:409904..413512+ (Fucus serratus male)
ATGGGAAACGCATTCGACGTGTTCGGTACCGGTAGTACGAGCCCGATCTT
GAAAACGAACGAATCCGTATCCGGCGTTATTGTGGACGGGGGCTATGAGT
ACTACACGATGGGAAACGCATTCGACGTGTTCGGTACCGGTAGTACGAGC
CCGATCTTGAAAACGAACGAATCCGTATCCGGCGTTATTGTGGACGGGGG
CTATGAGTACTACACGCTCTGCATCGCGCAGCACGTACACCACCATCGCG
TGGATATCAAGCTTGAGGTGAAATCAGGCGAGGCCGACCTGTACCTCTCC
GCCTCTGACCCTTATCCGCGGGTGAACAGCTCTGCATCGCGCAGCACGTA
CACCACCATCGCGTGGATATCAAGCTTGAGGTGAAATCAGGCGAGGCCGA
CCTGTACCTCTCCGCCTCTGACCCTTATCCGCGGGTGAACAGGGGAAGCA
CGTGGATCGCGGCAACTGCGGGCGATGAGTACGTAAGCCTTCCGACCTAC
GCCGAGGAGTTTTTGAACAGAAAACCTAGCGCGATTTTCGTTGGCGTCCA
CGGGCGGCCGAACGGTCGGTTTACACTTCAGGTAGCCATCACTGATATTG
ACGAGAGAGAAGTCTCTGCGCACAGTGCTCTCCGCACCCCTCGACCACGG
CGCTAAGGGAAGCACGTGGATCGCGGCAACTGCGGGCGATGAGTACGTAA
GCCTTCCGACCTACGCCGAGGAGTTTTTGAACAGAAAACCTAGCGCGATT
TTCGTTGGCGTCCACGGGCGGCCGAACGGTCGGTTTACACTTCAGGTAGC
CATCACTGATATTGACGAGAGAGAAGTCTCTGCGCACAGTGCTCTCCGCA
CCCCTCGACCACGGCGCTAA
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