mRNA_F-serratus_M_contig1481.3328.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1481.3328.1 vs. uniprot
Match: A0A6H5JBP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBP3_9PHAE) HSP 1 Score: 247 bits (630), Expect = 2.260e-75 Identity = 135/237 (56.96%), Postives = 179/237 (75.53%), Query Frame = 3
Query: 99 MSTNDPHMPKWALDPLLTENSPLRGSGGGGEGHGALNGSGRGDGGGVVDDRDSD-EFDSDVSDDDLGRYPGSKRIPRGCLLDTLMVVNIITCVTAIAVAATQALVLAEYKKLTVISIAIRSYTILFCALIMFAELEWTSTVREMHVLHSRLKREASYTIFMGVLVMEEEDEQDLNLGQYAIYMTIVAWAMVGIGALYFLMGLLCIQRMRDKRRKRYRELVAHFQNTEALRRDHDAIA 806
MS DPHMPKWALDPLLTE+SPL+ +G G EGHGA++G D+ DS+ ++DSD SD+D+ RY G + + RGCLLD+L+++N IT + A+ V Q +VLA +K L+ S+A+R Y ILFC LI+ AELEWT+TVREM VLHS + R Y+ F+GVLV+EEEDE+ L+LG + +Y+TIVAW MVGIGALYFL+GL C++R+RDK+ R++ LVAH + A+RRDHDAIA
Sbjct: 1 MSEEDPHMPKWALDPLLTESSPLQ-TGRGTEGHGAVDG---------ADEPDSEADYDSDFSDEDMARYSGVRTVRRGCLLDSLLLLNAITVIAALGVGVAQGMVLAYHKDLSPESVAVRCYNILFCMLIIMAELEWTTTVREMFVLHSWIPRGVVYS-FVGVLVLEEEDEKGLDLGGFGLYITIVAWIMVGIGALYFLLGLCCVKRIRDKKMARHKTLVAHAEMQAAMRRDHDAIA 226
BLAST of mRNA_F-serratus_M_contig1481.3328.1 vs. uniprot
Match: D8LMH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMH6_ECTSI) HSP 1 Score: 188 bits (478), Expect = 1.200e-53 Identity = 96/172 (55.81%), Postives = 131/172 (76.16%), Query Frame = 3
Query: 291 LGRYPGSKRIPRGCLLDTLMVVNIITCVTAIAVAATQALVLAEYKKLTVISIAIRSYTILFCALIMFAELEWTSTVREMHVLHSRLKREASYTIFMGVLVMEEEDEQDLNLGQYAIYMTIVAWAMVGIGALYFLMGLLCIQRMRDKRRKRYRELVAHFQNTEALRRDHDAIA 806
+ RY G + + RGCLLD+L+++N IT + A+ V Q +VL +K L+ S+A+R Y ILFC LI+ AELEWT+TVREM VLHS + R Y+ F+GVLV+EEEDE+ L+LG + +Y+TI+AW MVGIGALYFL+GL C++R+RDK+ R++ LVAH + A+RRDHDAIA
Sbjct: 1 MARYSGVRTVRRGCLLDSLLLLNAITVIAALGVGVAQGMVLGYHKDLSPESVAVRCYNILFCMLIIMAELEWTTTVREMFVLHSWIPRGVVYS-FVGVLVLEEEDEKGLDLGGFGLYITIIAWIMVGIGALYFLLGLCCVKRIRDKKMARHKTLVAHAEMQAAMRRDHDAIA 171
BLAST of mRNA_F-serratus_M_contig1481.3328.1 vs. uniprot
Match: W7TYB2_9STRA (Golgi apparatus membrane protein TVP15 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYB2_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 1.510e-16 Identity = 56/166 (33.73%), Postives = 96/166 (57.83%), Query Frame = 3
Query: 300 YPGSKRIPRGCLLDTLMVVNIITCVTAIAVAATQALVLAEYKKLTVISIAIRSYTILFCALIMFAELEWTSTVREMHVLHSRLKREASYTIFMGVLVMEEEDEQDLNLGQYAIYMTIVAWAMVGIGALYFLMGLLCIQRMRDKRRKRYRELVAHFQNTEALRRDHD 797
Y + I RGC L + +N + ++A++VA + L + Y L+ + IAIR Y I+F ++F EL WT VR+ +L + + R A YT F+G+L +++E E + + +++ ++G+G LYF+MG+ C++ +RD+R Y L + + EALRR D
Sbjct: 98 YLRRQDIRRGCCLSIFLAINAVCVLSALSVAVAEILSIV-YHGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYT-FVGLLSIKQEVEHEARINIVNVFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQAELEEALRRHGD 261
BLAST of mRNA_F-serratus_M_contig1481.3328.1 vs. uniprot
Match: A0A4D9D1W9_9STRA (Cryptochrome DASH n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1W9_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 4.070e-15 Identity = 56/166 (33.73%), Postives = 95/166 (57.23%), Query Frame = 3
Query: 300 YPGSKRIPRGCLLDTLMVVNIITCVTAIAVAATQALVLAEYKKLTVISIAIRSYTILFCALIMFAELEWTSTVREMHVLHSRLKREASYTIFMGVLVMEEEDEQDLNLGQYAIYMTIVAWAMVGIGALYFLMGLLCIQRMRDKRRKRYRELVAHFQNTEALRRDHD 797
Y + I RGC L + +N + ++A++VA + L + Y L+ + IAIR Y I+F ++F EL WT VR+ +L + + R A YT F+G+L +++E E + + ++ ++G+G LYF+MG+ C++ +RD+R Y L + + EALRR D
Sbjct: 566 YLRRQDIRRGCCLSIFLAINAVCVLSALSVAVAEILSIV-YHGLSPLGIAIRVYGIVFSIGVVFTELGWTQAVRDTWLLQNWISRGAIYT-FVGLLSIKQEVEHEARINIVNAFIYCAGLGLIGLGVLYFVMGVFCLKGVRDRRAADYTILKSQAELEEALRRHGD 729
BLAST of mRNA_F-serratus_M_contig1481.3328.1 vs. uniprot
Match: A0A7R9WMH7_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WMH7_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 8.910e-13 Identity = 54/168 (32.14%), Postives = 91/168 (54.17%), Query Frame = 3
Query: 324 RGCLLDTLMVVNIITCVTAIAVAATQALVLAEYKKLTVISIAIRSYTILFCALIMFAELEWTSTVREMHVLHSRLKREASYTIFMGVLVMEEED-------EQDLNLGQYAIYMTIVAWAMVGIGALYFLMGLLCIQRMRDKRRKRYRELVAHFQNTEALRRDHDAIA 806
R C+ +V+N IT + A + Q L + +K L+++ +R Y I CA+I+ ELEWTS +RE +L + L R Y F+GVL +E+ + + + ++ +V+ MVG+G LYF+MG+ C+Q + +K R Y E VA + A + ++ +A
Sbjct: 55 RKCVHKVFVVINGITVIIATLMFVAQLLGI-YFKTLSLVDYVLRVYIIALCAMIVMNELEWTSVIRESRLLRNWLTRGLIYA-FVGVLGIEQYEASPSGRHDDSAHFDVAMNFIRVVSNIMVGVGGLYFVMGICCMQLVSNKLRHEYEERVARAGDMHAAAQTYNDVA 220
BLAST of mRNA_F-serratus_M_contig1481.3328.1 vs. uniprot
Match: A0A7S0AVP1_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AVP1_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 1.140e-9 Identity = 49/172 (28.49%), Postives = 91/172 (52.91%), Query Frame = 3
Query: 324 RGCLLDTLMVVNIITCVTAIAVAATQALVLAEYKKLTVISIAIRSYTILFCALIMFAELEWTST-VREMHVLHSRLKREASYTIFMGVLVMEEE--------------DEQDLNLGQY-AIYMTIVAWAMVGIGALYFLMGLLCIQRMRDKRRKRY-RELVAHFQNTEALRR 788
R C +++NII + + +Q L + K+ T++ + +R Y FC + +FAE+E VR LH+ + + +Y+ F+ + M + D ++ + A+++ I AW M+G+GALY L+G+LC++ +RD+ R+ Y R + +F+ EAL+R
Sbjct: 152 RNCCHGLFIILNIIAVAACLLLILSQVLPIFFVKEQTLLQLTLRGYLTFFCLIFIFAEMELPLPFVRSSQSLHNFISKGFNYS-FVSICAMTQAEADLIEESIKKRTMDPMGIDFSWFHALFVEIPAWVMLGVGALYMLLGILCMRPVRDRCREDYARRMEDYFETREALQR 322
BLAST of mRNA_F-serratus_M_contig1481.3328.1 vs. uniprot
Match: B7FTB1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FTB1_PHATC) HSP 1 Score: 68.2 bits (165), Expect = 3.030e-9 Identity = 54/161 (33.54%), Postives = 82/161 (50.93%), Query Frame = 3
Query: 321 PRGCLLDTLMV-VNIITCVTAIAVAATQALVLAEYKKLTVISIAIRSYTILFCALIMFAELEWTSTVREMHVLHSRLKREASYTIFMGVLVMEEEDEQDLNLGQYAI------YMTIVAWAMVGIGALYFLMGLLCIQRMRDKRRKRY---RELVAHFQNT 773
PR TL+V V+ +T ++A+ + Q LV ++++ + +R Y I C L + ELEWT RE + + R Y F+GVL +EE D + A Y+ VAW MV GA+YF MG+LC+Q ++ RK + RE H ++T
Sbjct: 64 PRRKFFHTLVVLVSCVTILSAVNMGVGQ-LVGMVFEEVGPVQYVMRVYVIALCLLAILVELEWTKFARESAIFRIWISRGLFYA-FVGVLGLEENDTSSARNQEIAHSSASLKYVKAVAWIMVVCGAVYFFMGVLCLQLFYNRLRKDFQERRERAGHIRDT 222
BLAST of mRNA_F-serratus_M_contig1481.3328.1 vs. uniprot
Match: A0A7S1FP16_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FP16_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.410e-8 Identity = 54/164 (32.93%), Postives = 84/164 (51.22%), Query Frame = 3
Query: 348 MVVNIITCVTAIAVAATQALVLAEYKKLT-----------------VISIAIRSYTILFCALIMFAELEWTSTVREMHVLHSRLKREASYTIFMGVLVMEEEDEQDLNLGQ---------YAIYMTIVAWAMVGI--GALYFLMGLLCIQRMRDKRRKRYRELV 755
+V+ ++T +A + +QALV Y T +I +AI+ Y ++FC I+ AELEW ++ ++L R Y+ F+GVL MEE + L + + +M + AMV + G LYF+MGLLCI ++RDK R+ Y+ELV
Sbjct: 239 IVLQVVTVASAAFLGTSQALVTGWYDPNTGDQSTGAEAAPYFWNRDLIEVAIQCYLVVFCLTIVLAELEWPGPIKRSNILQFWPFRGILYS-FIGVLGMEESIVKPRTLAEGTTWSSSPVFIAHMALKVSAMVLVVTGCLYFIMGLLCINKIRDKCRQNYKELV 401
BLAST of mRNA_F-serratus_M_contig1481.3328.1 vs. uniprot
Match: A0A7S2KE92_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KE92_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 4.070e-8 Identity = 49/162 (30.25%), Postives = 90/162 (55.56%), Query Frame = 3
Query: 315 RIPRGCLLDTLMVVNIITCVTAIAVAATQALVL--AEYKKLTVISIAIRSYTILFCALIMFAELEWTSTVREMHVLHSRLKREASYTIFMGVLVMEEE--------DEQDLNL-----GQYAIYMTIVAWAMVGIGALYFLMGLLCIQRMRDKRRKRYRELV 755
R+ + CL V+ +T ++A+ + +Q L + + ++ + +A+R Y LFC ++ AELE + M +LHS L R Y+ F+G++ MEE ++ D ++ G ++++ + ++AM +G LYFLMG LC++R+RD R +Y E +
Sbjct: 123 RVRKSCLHLFFDCVSSVTALSALCMGLSQVLPMFFVDEGEIGPVQMALRVYMTLFCVGVIVAELECL-LINRMPLLHSWLVRGIVYS-FLGIVGMEESVAVKFDLNNDDDSSVPTTREGHASLFIKLSSYAMTALGVLYFLMGCLCMRRLRDNCRTKYNERI 282
BLAST of mRNA_F-serratus_M_contig1481.3328.1 vs. uniprot
Match: A0A836CNQ0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNQ0_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 4.920e-8 Identity = 43/117 (36.75%), Postives = 63/117 (53.85%), Query Frame = 3
Query: 372 VTAIAVAATQALVLAEYKKLTVISIAIRSYTILFCALIMFAELEWTSTVREMHVLHSRLKREASYTIFMGVLVMEEEDEQDLNLGQYAIYMTIVAWAMVGIGALYFLMGLLCIQRMR 722
+ A+ V LVLA L+ + A+R Y I+FC I+ AELEW S ++ +L R YT F+G+L +E D D + + Y I W +VG+G LYF MGL + ++R
Sbjct: 2 IVAVGVIIALILVLALSNNLSHVEFAVRVYAIVFCIGIILAELEWPSIMKNAVLLRWWPVRGLLYT-FVGLLTLEISDFNDNPVAEAFHY--IFGWILVGVGVLYFFMGLARLHKVR 115 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1481.3328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1481.3328.1 >prot_F-serratus_M_contig1481.3328.1 ID=prot_F-serratus_M_contig1481.3328.1|Name=mRNA_F-serratus_M_contig1481.3328.1|organism=Fucus serratus male|type=polypeptide|length=237bp MSTNDPHMPKWALDPLLTENSPLRGSGGGGEGHGALNGSGRGDGGGVVDDback to top mRNA from alignment at F-serratus_M_contig1481:64950..71675+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1481.3328.1 ID=mRNA_F-serratus_M_contig1481.3328.1|Name=mRNA_F-serratus_M_contig1481.3328.1|organism=Fucus serratus male|type=mRNA|length=6726bp|location=Sequence derived from alignment at F-serratus_M_contig1481:64950..71675+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1481:64950..71675+ >mRNA_F-serratus_M_contig1481.3328.1 ID=mRNA_F-serratus_M_contig1481.3328.1|Name=mRNA_F-serratus_M_contig1481.3328.1|organism=Fucus serratus male|type=CDS|length=1422bp|location=Sequence derived from alignment at F-serratus_M_contig1481:64950..71675+ (Fucus serratus male)back to top |