mRNA_F-serratus_M_contig1477.3297.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1477.3297.1 vs. uniprot
Match: D8LDC7_ECTSI (Plastid lipid associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC7_ECTSI) HSP 1 Score: 287 bits (734), Expect = 4.980e-89 Identity = 166/262 (63.36%), Postives = 202/262 (77.10%), Query Frame = 1
Query: 334 RSLAPRRSSVGSSNSDAAPVNV-VYPVADDPRLAGGXXXXXXXXXMGKTSGGAGDSDTRSSLKRKLLRKVATLNRGFIAKKADRVDIEEIVEMLELENPNPGACAGFETQSSPIAGRWQLLYTSSLDVLSLQLNPTITIGQIFQQIESDGRGIQNMIELQPPFAAVTNRILGSSVATVTVKLETEPVTDTRINLKFVRTEIKADSLFGRNLDLPTLGVDIPSSDKLRRVLNKG----------KAKMEDTKEKARDLTKKVK 1086
R + P + G S P V V DP AGG XXXXXXX GD+ TR++LK+KLLRKVATLNRGF+A++ DR+D+EEI+EMLE+ENPNP +C GFET SSP+AGRWQLLYT+SLDVLSLQ+NP +T+G+IFQQIESDGR IQN+IELQPPFAAV N+ILGSS+ T+TVKLETEPV+D+RINLKFVRTEIKA+SLFGR LDLPTLGVDIPS+++L +++ KG K K+E K KAR L +K+K
Sbjct: 92 RGVGPLLMTSGDGESGPGPAAVPVDAELSDPAAAGGGXXXXXXXDA------VGDAATRAALKQKLLRKVATLNRGFVAEELDRLDVEEIIEMLEMENPNPKSCEGFETGSSPLAGRWQLLYTTSLDVLSLQINPAVTVGKIFQQIESDGRSIQNIIELQPPFAAV-NKILGSSMTTLTVKLETEPVSDSRINLKFVRTEIKANSLFGRELDLPTLGVDIPSAERLEKLIPKGGGSSGGGKALKEKVEGAKTKARQLAEKLK 346
BLAST of mRNA_F-serratus_M_contig1477.3297.1 vs. uniprot
Match: A0A6H5K952_9PHAE (PAP_fibrillin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K952_9PHAE) HSP 1 Score: 267 bits (683), Expect = 7.740e-82 Identity = 160/304 (52.63%), Postives = 196/304 (64.47%), Query Frame = 1
Query: 334 RSLAPRRSSVGSSNSDAAPVNV-VYPVADDPRLAGGXXXXXXXXXMGKTSGGAGDSDTRSSLKRKLLRKVATLNRGFIAKKADRVDIEEIVEMLELENPNPGACAGFETQSSPIAGRWQLLYTSSLDVLSLQLNPTITIGQIFQQIESDGRGIQNMIELQPPFAAVTNRILGSSVATVT------------------------------------------VKLETEPVTDTRINLKFVRTEIKADSLFGRNLDLPTLGVDIPSSDKLRRVLNKG----------KAKMEDTKEKARDLTKKVK 1086
R + P + G S P V V +P AGG G T GD TR++LK+KLLRKVATLNRGF+A+++DR+D+EEI+EMLE+ENPNP +C GFET SSP+AGRWQLLYT+SLDVLSLQ+NP +T+G+IFQQIESDGR IQN+IELQPPFAAV N+ILGSS+ T+T VKLETEPV+D+RINLKFVRTEIKA+SLFGR LDLPTLGV+IPS + L +++ KG K K ED K KAR+L +K+K
Sbjct: 16 RGVGPLFMTSGDGQSGPGPAAVPVDAELSEPAAAGGGARE------GGTEDAVGDPATRAALKQKLLRKVATLNRGFVAEESDRLDVEEIIEMLEMENPNPKSCEGFETGSSPLAGRWQLLYTTSLDVLSLQINPAVTVGKIFQQIESDGRSIQNIIELQPPFAAV-NKILGSSMTTLTARTTFSFCAIFCVVERCTPSGVRLACDHGRRPRQLDQYGHEKVKLETEPVSDSRINLKFVRTEIKANSLFGRELDLPTLGVNIPSVESLEKLIPKGGGSSGGGKALKEKAEDAKTKARELVEKLK 312
BLAST of mRNA_F-serratus_M_contig1477.3297.1 vs. uniprot
Match: R7Q658_CHOCR (PAP_fibrillin domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q658_CHOCR) HSP 1 Score: 98.2 bits (243), Expect = 2.340e-19 Identity = 87/261 (33.33%), Postives = 124/261 (47.51%), Query Frame = 1
Query: 226 PLRREEFHMGWGFPTESRQRGRVVGALEGMRRPHQ--ERSLAPRRSSVGSSNSDAAPVNVVYPVADDPRLAGGXXXXXXXXXMGKTSGGAGDSDTR----SSLKRKLLRKVATLNRGFIAKKADRVDIEEIVEMLELENPNPGACAGFETQSSPIAGRWQLLYTSSLDVLSLQL-NPTITIGQIFQQIES---DGRG-----IQNMIELQPPFAAVTNRILGSSVATVTVKLETEPVTDTRINLKFVRTEIKADSLFGRNL 963
PL R H F S +R R V RP + +P S + SD+AP +V D P A D+ TR S LK L V++ NRG A DR +I +V LE P P A A + GRW+LL+T++LDVLSL L P +GQIFQ I +G+G I+N+++L+P FA V+N + G S+ ++TV E +D+R+++ FV+ IK + +FG L
Sbjct: 8 PLIRRSRHDPVSF---SPRRRRPVXXXXXXXRPRMTYQPDPSPYSKSDFGNGSDSAPSDVELEAVDVPASAV-------------------DAQTRAVPISDLKCSLYAAVSSTNRGLTASADDRANILSLVAELERAKP-PTAPAD---DPGMLCGRWRLLFTNALDVLSLGLLAPVAQVGQIFQNIYEVPLEGKGDYDYDIENVVQLEPAFAPVSNVLGGQSITSITVSAEGRKTSDSRVDITFVQNAIKQEKIFGMQL 242
BLAST of mRNA_F-serratus_M_contig1477.3297.1 vs. uniprot
Match: A0A5J4YK43_PORPP (Plastid lipid-associated protein 1, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YK43_PORPP) HSP 1 Score: 79.3 bits (194), Expect = 1.960e-12 Identity = 59/174 (33.91%), Postives = 91/174 (52.30%), Query Frame = 1
Query: 514 LKRKLLRKVATLNRGFIAKKADRVDIEEIVEMLELENPNPGACAGFETQSSPI-----AGRWQLLYTSSLDVLSLQL-NPTITIGQIFQQIESDGRGIQ------NMIELQPPFAAVTNRI-LGSSVATVTVKLETE--PVTDTRINLKFVRTEIKADSLFGRNLDLPTLGVDI 990
LK++ + A NRGF A A + I +++E LE + T ++P+ G W L+YT+SLDVLSL L P +G+IFQ +E G Q N++EL+PPF V + + LG + + + V+ E D +NL+F+R+ + A S+ G L LP L +
Sbjct: 90 LKQRFVLATADTNRGFAADAARQKVIMQMIEELEARS----------TSATPLDDALFLGEWSLIYTNSLDVLSLGLLAPVAGLGRIFQNVERAATGAQHEFDIFNIVELEPPFQVVLSPLGLGPTRSVLRVEAEGSRGDQDDQLLNLRFMRSNLTAASIAGMKLQLPKLSASL 253
BLAST of mRNA_F-serratus_M_contig1477.3297.1 vs. uniprot
Match: UPI001FF0EE99 (PAP/fibrillin family protein n=1 Tax=Synechococcus sp. C9 TaxID=102119 RepID=UPI001FF0EE99) HSP 1 Score: 75.9 bits (185), Expect = 2.460e-12 Identity = 37/96 (38.54%), Postives = 58/96 (60.42%), Query Frame = 1
Query: 523 KLLRKVATLNRGFIAKKADRVDIEEIVEMLELENPNPGACAGFETQSSPIAGRWQLLYTSSLDVLSLQLNPTITIGQIFQQIESDGRGIQNMIELQ 810
KLL+ VA NRG +A + ++++++ LE NP P E ++G WQLLYT+S+DV+ L P +T+GQI+Q I++D + N+ E Q
Sbjct: 6 KLLKAVAVTNRGLLASPRSQAELDQLIRQLEAHNPTPNPAQAPEL----LSGCWQLLYTTSVDVIGLGRVPGVTLGQIYQVIQADKNRVYNLAEAQ 97
BLAST of mRNA_F-serratus_M_contig1477.3297.1 vs. uniprot
Match: UPI001A00F769 (PAP/fibrillin family protein n=1 Tax=Pleurocapsales cyanobacterium LEGE 06147 TaxID=1828827 RepID=UPI001A00F769) HSP 1 Score: 67.4 bits (163), Expect = 2.270e-9 Identity = 49/148 (33.11%), Postives = 75/148 (50.68%), Query Frame = 1
Query: 511 SLKRKLLRKVATLNRGFIAKKADRVDIEEIVEMLELENPNPGACAGFETQSSPIAGRWQLLYTSSLDVLSLQLNPTITIGQIFQQIESDGRGIQNMIE-LQPPFAAVTNRILGSSVATVTVKLETEPVTDTRINLKFVRTEIKADSLF 951
S K +LL +A NRG +A + D V + ++ LE NP P FE + + G W+LLYT+S +L L P +GQI+Q I + + N+ E + PF + +V K E PV+++R+N+KF R+ I F
Sbjct: 2 SKKAELLEAIAGTNRGLLATEIDNVRVLSAIQQLEDYNPTPKP---FEAKEL-LEGNWRLLYTTSKGILGLDRFPLFKLGQIYQCIRTAEATLYNIAEVIGLPFL--------EGIVSVVAKFE--PVSESRVNVKFERSIIGLQRFF 135
BLAST of mRNA_F-serratus_M_contig1477.3297.1 vs. uniprot
Match: A0A1J0AEG1_9CYAN (PAP fibrillin family protein n=1 Tax=Gloeomargarita lithophora Alchichica-D10 TaxID=1188229 RepID=A0A1J0AEG1_9CYAN) HSP 1 Score: 67.0 bits (162), Expect = 2.860e-9 Identity = 35/98 (35.71%), Postives = 56/98 (57.14%), Query Frame = 1
Query: 517 KRKLLRKVATLNRGFIAKKADRVDIEEIVEMLELENPNPGACAGFETQSSPIAGRWQLLYTSSLDVLSLQLNPTITIGQIFQQIESDGRGIQNMIELQ 810
K KLL+ VA NRG + + ++++++ LE NP E + G WQLLYT+S+DVL L P +T+GQ++Q I+++ + N+ E Q
Sbjct: 4 KLKLLKAVAVTNRGLLTSPRVQAELDQLIRQLEAHNPTLNPAQAPEL----LGGCWQLLYTTSVDVLGLGRVPGVTLGQVYQIIQAEKGRVYNLAEAQ 97
BLAST of mRNA_F-serratus_M_contig1477.3297.1 vs. uniprot
Match: A0A7S0G8T1_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G8T1_9RHOD) HSP 1 Score: 67.0 bits (162), Expect = 4.820e-9 Identity = 60/182 (32.97%), Postives = 85/182 (46.70%), Query Frame = 1
Query: 490 GDSDTRSSLKRKLLRKVATLNRGFIAKKADRVDIEEIVEMLELENPNPGACAGFETQSSPIAGRWQLLYTSSL-----DVLSLQLNPTITIGQIFQQIESDGRGIQNMIELQP-PFAAVTNRILGSSVATVTVKLETEPVTDTRINLKFVRTEIKADSLFGRNLDLPTLGVDIPSSDKLRRV 1017
G +RS L +LL A NRG A + IE+IV +LE +NPNP A ET + I GRW L+Y S+ +L+ +P I +GQ+ Q I + + N I++ P A T+ L PV R+ + + IK S F R DL L +DIP + +RV
Sbjct: 25 GVKQSRSDLTTQLLEICAVTNRGQTASAEQKSLIEDIVALLEADNPNP---APVETDA--IDGRWNLIYLSTPFYKANPLLATTASPFIEVGQVRQTISMETGELINEIDITAFPMLA----------GTLVTNLRLTPVGAERLEVALEKATIKGGSAFER-FDLGALKLDIPVEEIYQRV 190
BLAST of mRNA_F-serratus_M_contig1477.3297.1 vs. uniprot
Match: U9VVE8_9CYAN (Fibrillin n=1 Tax=Leptolyngbya sp. Heron Island J TaxID=1385935 RepID=U9VVE8_9CYAN) HSP 1 Score: 65.9 bits (159), Expect = 7.290e-9 Identity = 44/143 (30.77%), Postives = 66/143 (46.15%), Query Frame = 1
Query: 526 LLRKVATLNRGFIAKKADRVDIEEIVEMLELENPNPGACAGFETQSSPIAGRWQLLYTSSLDVLSLQLNPTITIGQIFQQIESDGRGIQNMIELQPPFAAVTNRILGSSVATVTVKLETEPVTDTRINLKFVRTEIKADSLFG 954
LL +A NRG +A + DI V LE NP A E + G WQLLYT+S ++L + P + +G I+Q + D + I N+ E++ + V+V E V+D R+N++F R S G
Sbjct: 7 LLDAIAPTNRGLLAAPEQKADILSKVVCLEARNPTANPLAATEL----LNGNWQLLYTTSTELLGIDRFPLLGLGNIYQCVRIDQQRIYNLAEIKAALGGL-----------VSVTATFEAVSDQRVNVRFDRAIFGLQSTLG 134
BLAST of mRNA_F-serratus_M_contig1477.3297.1 vs. uniprot
Match: A0A6P0NE78_9CYAN (Fibrillin n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0NE78_9CYAN) HSP 1 Score: 65.5 bits (158), Expect = 9.880e-9 Identity = 44/135 (32.59%), Postives = 70/135 (51.85%), Query Frame = 1
Query: 526 LLRKVATLNRGFIAKKADRVDIEEIVEMLELENP--NPGACAGFETQSSPIAGRWQLLYTSSLDVLSLQLNPTITIGQIFQQIESDGRGIQNMIELQPPFAAVTNRILGSSVATVTVKLETEPVTDTRINLKFVR 924
LL +A NRG +A + DI V LE +NP NP CA + G WQLLYT+S ++L + P +++G I+Q + D + I N+ E++ A + + VT K E V++ R++++F R
Sbjct: 7 LLNAIAPTNRGLLANDVQKEDILAQVTRLETKNPTPNPLECADL------LNGNWQLLYTTSSELLGIDRVPLLSLGNIYQCVRLDQQRIYNLAEIRSAIAGLVS---------VTAKFEV--VSNRRVDVRFDR 124 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1477.3297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1477.3297.1 >prot_F-serratus_M_contig1477.3297.1 ID=prot_F-serratus_M_contig1477.3297.1|Name=mRNA_F-serratus_M_contig1477.3297.1|organism=Fucus serratus male|type=polypeptide|length=444bp YPQLRPPYLLTMLPRDRMGKIVGLMLLHSAIPSPCQAFVLPQSSCLRAPLback to top mRNA from alignment at F-serratus_M_contig1477:190399..198678- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1477.3297.1 ID=mRNA_F-serratus_M_contig1477.3297.1|Name=mRNA_F-serratus_M_contig1477.3297.1|organism=Fucus serratus male|type=mRNA|length=8280bp|location=Sequence derived from alignment at F-serratus_M_contig1477:190399..198678- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1477:190399..198678- >mRNA_F-serratus_M_contig1477.3297.1 ID=mRNA_F-serratus_M_contig1477.3297.1|Name=mRNA_F-serratus_M_contig1477.3297.1|organism=Fucus serratus male|type=CDS|length=2664bp|location=Sequence derived from alignment at F-serratus_M_contig1477:190399..198678- (Fucus serratus male)back to top |