mRNA_F-serratus_M_contig1438.3133.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1438.3133.1
Unique NamemRNA_F-serratus_M_contig1438.3133.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1438.3133.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 5.680e-16
Identity = 42/95 (44.21%), Postives = 65/95 (68.42%), Query Frame = 1 
Query:   85 NAGVLEQLPLFLQESFPFLLTKRSAIDMAIVREMRDDLVHSKGFKATVEALRQSHLQAYYQSRIKYLNQVLWNDFYKTADGREAPAKDALEFGAF 369
            N+ VL  LPL++QESFPF LT++SAI   +V E+ D+L+H+KGF A+ EAL+Q+HL  ++   +KY + +LW    +  +  +A  +D  EFG+F
Sbjct:    6 NSDVLALLPLYVQESFPFFLTRKSAIHRDVVAEVADNLMHAKGFSASSEALQQAHLYRFHSMELKYYSMLLW----RREEQLDAGVED--EFGSF 94
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BLAST of mRNA_F-serratus_M_contig1438.3133.1 vs. uniprot
Match: A0A6H5L7G9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G9_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 9.580e-15
Identity = 43/108 (39.81%), Postives = 65/108 (60.19%), Query Frame = 1 
Query:   55 ERASETFRGWNAGVLEQLPLFLQESFPFLLTKRSAIDMAIVREMRDDLVHSKGFKATVEALRQSHLQAYYQSRIKYLNQVLWNDFYKTADG--REAP-AKDALEFGAF 369
            E+   +F  W+AG L +LP ++ + FPFLLTKRS I++ +V  + DDLVH KGF A  + +RQ+H   +   ++KY + V   +  +T+ G  R A  AK    FG+F
Sbjct:  169 EKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLV---NTRRTSSGIFRSANLAKTPERFGSF 273
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BLAST of mRNA_F-serratus_M_contig1438.3133.1 vs. uniprot
Match: A0A6H5KTU1_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTU1_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 3.060e-14
Identity = 34/80 (42.50%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:   55 ERASETFRGWNAGVLEQLPLFLQESFPFLLTKRSAIDMAIVREMRDDLVHSKGFKATVEALRQSHLQAYYQSRIKYLNQV 294
            E+   +F  W+AG L +LP ++ + FPFLLTKRS I++ +V  + DDLVH KGF A  + +RQ+H   +   ++KY + V
Sbjct:   29 EKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLV 108
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BLAST of mRNA_F-serratus_M_contig1438.3133.1 vs. uniprot
Match: A0A6H5KGK6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK6_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 4.680e-14
Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:   55 ERASETFRGWNAGVLEQLPLFLQESFPFLLTKRSAIDMAIVREMRDDLVHSKGFKATVEALRQSHLQAYYQSRIKYLNQVLWNDFYKTADG--REAP-AKDALEFGAF 369
            E+   +F  W+AG L +LP ++ + FPFLLTKRS I++ +V  + DDLVH KG  A  + +RQ+H   +    +KY + V   +  +T+ G  R A  AK    FG+F
Sbjct:   29 EKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGLSAAAKNIRQAHTTKFMVDHLKYTSLV---NTRRTSSGIFRSANLAKTPERFGSF 133
[Close]
BLAST of mRNA_F-serratus_M_contig1438.3133.1 vs. uniprot
Match: A0A6H5KJA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA7_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 8.250e-14
Identity = 41/112 (36.61%), Postives = 66/112 (58.93%), Query Frame = 1 
Query:   43 RYKDERASETFRGWNAGVLEQLPLFLQESFPFLLTKRSAIDMAIVREMRDDLVHSKGFKATVEALRQSHLQAYYQSRIKYLNQVLWNDFYKTADG--REAP-AKDALEFGAF 369
            + + E+   +F  W+AG L +LP ++ + FPFLLTKRS I++ ++  + D LVH KGF A  + +RQ+H   +   ++KY + V   +  +T+ G  R A  AK    FG+F
Sbjct:   24 KQRAEKCKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMLDRLADGLVHGKGFSAGTKNIRQAHTTKFMVDQLKYTSLV---NTRRTSSGIFRSANLAKTPERFGSF 132
[Close]
BLAST of mRNA_F-serratus_M_contig1438.3133.1 vs. uniprot
Match: A0A6H5KDX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX0_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.730e-13
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 1 
Query:   55 ERASETFRGWNAGVLEQLPLFLQESFPFLLTKRSAIDMAIVREMRDDLVHSKGFKATVEALRQSHLQAYYQSRIKYLNQV 294
            E+   +F  W+AG L +LP ++ + FPFLLTKRS I++ +V  + DDLVH K F A  + +RQ+H   +   ++KY + V
Sbjct:  135 EKHKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVNRLADDLVHGKDFSAAAKNIRQAHTTKFMVDQLKYTSLV 214
[Close]
BLAST of mRNA_F-serratus_M_contig1438.3133.1 vs. uniprot
Match: A0A6H5KT01_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT01_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.080e-13
Identity = 41/99 (41.41%), Postives = 61/99 (61.62%), Query Frame = 1 
Query:   82 WNAGVLEQLPLFLQESFPFLLTKRSAIDMAIVREMRDDLVHSKGFKATVEALRQSHLQAYYQSRIKYLNQVLWNDFYKTADG--REAP-AKDALEFGAF 369
            W+AG L +LP ++ + FPFLLTKRS I++ +V  + DDLVH KGF A  + +RQ+H   +   ++KY + V   +  +T+ G  R A  AK    FG+F
Sbjct:   57 WDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNIRQAHTTKFMVDQLKYTSLV---NTRRTSSGIFRSANLAKTPERFGSF 152
[Close]
BLAST of mRNA_F-serratus_M_contig1438.3133.1 vs. uniprot
Match: A0A6H5JPP4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPP4_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 4.460e-13
Identity = 33/80 (41.25%), Postives = 50/80 (62.50%), Query Frame = 1 
Query:   55 ERASETFRGWNAGVLEQLPLFLQESFPFLLTKRSAIDMAIVREMRDDLVHSKGFKATVEALRQSHLQAYYQSRIKYLNQV 294
            E+   +F  W AG L +LP ++ + FPFLLTKRS I++ +V  + DDLVH KGF A  + + Q+H   +   ++KY + V
Sbjct:  169 EKRKTSFNAWGAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNICQAHTTKFMVDQLKYTSLV 248
[Close]
BLAST of mRNA_F-serratus_M_contig1438.3133.1 vs. uniprot
Match: A0A6H5K7J6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7J6_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 1.550e-11
Identity = 30/69 (43.48%), Postives = 45/69 (65.22%), Query Frame = 1 
Query:   58 RASETFRGWNAGVLEQLPLFLQESFPFLLTKRSAIDMAIVREMRDDLVHSKGFKATVEALRQSHLQAYY 264
            +   +F  W+AG L +LP ++ + FPFLLTKRS I++ +V  + DDLVH KGF A  + + Q ++Q  Y
Sbjct:  103 KGKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICMVDRLADDLVHGKGFSAAAKNICQVNMQCAY 171
[Close]
BLAST of mRNA_F-serratus_M_contig1438.3133.1 vs. uniprot
Match: A0A6H5JXN0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN0_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 3.710e-11
Identity = 33/92 (35.87%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:   55 ERASETFRGWNAGVLEQLPLFLQESFPFLLTKRSAIDMAIVREMRDDLVHSKGFKATVEALRQSHLQAYYQSRIK--YLNQVLWNDFYKTAD 324
            E+   +F  W+AG L +LP ++ + FPFLLTKRS I++  V  + D LVH KGF    + +RQ+H   +   ++K    + +L+   +K  D
Sbjct:  233 EKRKTSFNAWDAGCLRRLPEYISKEFPFLLTKRSGIEICKVDRLTDHLVHGKGFSGAAKDIRQAHTTKFMVDQLKDAVASALLYEVIHKNKD 324
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1438.3133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE5.680e-1644.213'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5L7G9_9PHAE9.580e-1539.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTU1_9PHAE3.060e-1442.503'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KGK6_9PHAE4.680e-1438.89Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KJA7_9PHAE8.250e-1436.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDX0_9PHAE1.730e-1341.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KT01_9PHAE2.080e-1341.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPP4_9PHAE4.460e-1341.25Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7J6_9PHAE1.550e-1143.48Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JXN0_9PHAE3.710e-1135.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1438contigF-serratus_M_contig1438:50565..50933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue1.5e-08
Seed eggNOG ortholog2880.D7FIV2
Preferred nameWRN
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
EC3.1.11.1,3.6.4.12
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Exons1
Model size369
Cds size366
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929424.268973-UTR-F-serratus_M_contig1438:50564..505671622929424.268973-UTR-F-serratus_M_contig1438:50564..50567Fucus serratus maleUTRF-serratus_M_contig1438 50565..50567 +
1690962845.4594274-UTR-F-serratus_M_contig1438:50564..505671690962845.4594274-UTR-F-serratus_M_contig1438:50564..50567Fucus serratus maleUTRF-serratus_M_contig1438 50565..50567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929424.287341-CDS-F-serratus_M_contig1438:50567..509331622929424.287341-CDS-F-serratus_M_contig1438:50567..50933Fucus serratus maleCDSF-serratus_M_contig1438 50568..50933 +
1690962845.4721556-CDS-F-serratus_M_contig1438:50567..509331690962845.4721556-CDS-F-serratus_M_contig1438:50567..50933Fucus serratus maleCDSF-serratus_M_contig1438 50568..50933 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1438.3133.1prot_F-serratus_M_contig1438.3133.1Fucus serratus malepolypeptideF-serratus_M_contig1438 50568..50933 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1438.3133.1

>prot_F-serratus_M_contig1438.3133.1 ID=prot_F-serratus_M_contig1438.3133.1|Name=mRNA_F-serratus_M_contig1438.3133.1|organism=Fucus serratus male|type=polypeptide|length=122bp
MSLLFPSPPQSHRRYKDERASETFRGWNAGVLEQLPLFLQESFPFLLTKR
SAIDMAIVREMRDDLVHSKGFKATVEALRQSHLQAYYQSRIKYLNQVLWN
DFYKTADGREAPAKDALEFGAF
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mRNA from alignment at F-serratus_M_contig1438:50565..50933+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1438.3133.1 ID=mRNA_F-serratus_M_contig1438.3133.1|Name=mRNA_F-serratus_M_contig1438.3133.1|organism=Fucus serratus male|type=mRNA|length=369bp|location=Sequence derived from alignment at F-serratus_M_contig1438:50565..50933+ (Fucus serratus male)
ACGATGTCACTGCTGTTTCCCTCACCCCCCCAATCTCACCGCCGTTACAA
GGACGAGCGTGCGTCGGAGACATTCAGAGGTTGGAATGCAGGAGTGCTGG
AGCAACTTCCACTGTTCTTGCAGGAGTCCTTCCCGTTCCTGCTGACCAAG
CGGTCGGCAATAGATATGGCCATCGTACGCGAGATGCGCGATGACTTGGT
CCATTCCAAGGGGTTCAAGGCGACCGTGGAGGCTCTACGGCAGTCACACT
TGCAGGCCTATTACCAGAGTCGCATAAAGTACCTTAACCAGGTGCTGTGG
AACGACTTCTACAAAACAGCGGATGGAAGAGAAGCTCCAGCCAAAGACGC
TTTGGAGTTCGGGGCGTTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1438:50565..50933+

>mRNA_F-serratus_M_contig1438.3133.1 ID=mRNA_F-serratus_M_contig1438.3133.1|Name=mRNA_F-serratus_M_contig1438.3133.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig1438:50565..50933+ (Fucus serratus male)
ATGTCACTGCTGTTTCCCTCACCCCCCCAATCTCACCGCCGTTACAAGGA
CGAGCGTGCGTCGGAGACATTCAGAGGTTGGAATGCAGGAGTGCTGGAGC
AACTTCCACTGTTCTTGCAGGAGTCCTTCCCGTTCCTGCTGACCAAGCGG
TCGGCAATAGATATGGCCATCGTACGCGAGATGCGCGATGACTTGGTCCA
TTCCAAGGGGTTCAAGGCGACCGTGGAGGCTCTACGGCAGTCACACTTGC
AGGCCTATTACCAGAGTCGCATAAAGTACCTTAACCAGGTGCTGTGGAAC
GACTTCTACAAAACAGCGGATGGAAGAGAAGCTCCAGCCAAAGACGCTTT
GGAGTTCGGGGCGTTCATGTCACTGCTGTTTCCCTCACCCCCCCAATCTC
ACCGCCGTTACAAGGACGAGCGTGCGTCGGAGACATTCAGAGGTTGGAAT
GCAGGAGTGCTGGAGCAACTTCCACTGTTCTTGCAGGAGTCCTTCCCGTT
CCTGCTGACCAAGCGGTCGGCAATAGATATGGCCATCGTACGCGAGATGC
GCGATGACTTGGTCCATTCCAAGGGGTTCAAGGCGACCGTGGAGGCTCTA
CGGCAGTCACACTTGCAGGCCTATTACCAGAGTCGCATAAAGTACCTTAA
CCAGGTGCTGTGGAACGACTTCTACAAAACAGCGGATGGAAGAGAAGCTC
CAGCCAAAGACGCTTTGGAGTTCGGGGCGTTC
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